RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	PEP3	P27801	918 aa		12.54	□□□□□ -0.4
VPS60	YDR486C	YHL050C	P38721	697 aa		12.54	□□□□□ -0.4
VPS60	YDR486C	CRG1	P38892	291 aa	RIP-Chip data	12.54	□□□□□ -0.4	not detected
VPS60	YDR486C	RTS1	P38903	757 aa		12.54	□□□□□ -0.4
VPS60	YDR486C	YGR117C	P53270	476 aa		12.54	□□□□□ -0.4
VPS60	YDR486C	RPS15	Q01855	142 aa	Known RBP	12.54	□□□□□ -0.4
VPS60	YDR486C	YPL260W	Q08977	551 aa		12.54	□□□□□ -0.4
VPS60	YDR486C	SRS2	P12954	1174 aa		12.53	□□□□□ -0.4
VPS60	YDR486C	HPR1	P17629	752 aa	Known RBP	12.53	□□□□□ -0.4
VPS60	YDR486C	RTG2	P32608	588 aa	Known RBP	12.53	□□□□□ -0.4
VPS60	YDR486C	UFD2	P54860	961 aa		12.53	□□□□□ -0.4
VPS60	YDR486C	SPN1	Q06505	410 aa	Predicted RBP	12.53	□□□□□ -0.4
VPS60	YDR486C	RER2	P35196	286 aa		12.52	□□□□□ -0.41
VPS60	YDR486C	MRD1	Q06106	887 aa	Known RBP	12.52	□□□□□ -0.41
VPS60	YDR486C	KEL3	Q08979	651 aa	Predicted RBP	12.52	□□□□□ -0.41
VPS60	YDR486C	ESF1	Q06344	628 aa	Known RBP	12.51	□□□□□ -0.41
VPS60	YDR486C	AIM7	Q12156	149 aa		12.51	□□□□□ -0.41
VPS60	YDR486C	VID28	P40547	921 aa		12.5	□□□□□ -0.41
VPS60	YDR486C	TSR3	Q12094	313 aa	Known RBP	12.5	□□□□□ -0.41
VPS60	YDR486C	MYO3	P36006	1272 aa		12.49	□□□□□ -0.41
VPS60	YDR486C	VID27	P40157	782 aa		12.49	□□□□□ -0.41
VPS60	YDR486C	EMP47	P43555	445 aa		12.49	□□□□□ -0.41
VPS60	YDR486C	HDA1	P53973	706 aa		12.49	□□□□□ -0.41
VPS60	YDR486C	ECM23	Q02710	187 aa		12.49	□□□□□ -0.41
VPS60	YDR486C	PCL8	Q08966	492 aa		12.49	□□□□□ -0.41
VPS60	YDR486C	RAD61	Q99359	647 aa		12.49	□□□□□ -0.41
VPS60	YDR486C	GSC2	P40989	1895 aa		12.48	□□□□□ -0.41
VPS60	YDR486C	CBP1	P07252	654 aa		12.48	□□□□□ -0.41
VPS60	YDR486C	ANP1	P32629	500 aa		12.48	□□□□□ -0.41
VPS60	YDR486C	VPS20	Q04272	221 aa		12.48	□□□□□ -0.41
VPS60	YDR486C	PUS5	Q06244	254 aa		12.48	□□□□□ -0.41
VPS60	YDR486C	FBP26	P32604	452 aa		12.47	□□□□□ -0.41
VPS60	YDR486C	MSH4	P40965	878 aa	Predicted RBP	12.47	□□□□□ -0.41
VPS60	YDR486C	PTK2	P47116	818 aa	Known RBP	12.47	□□□□□ -0.41
VPS60	YDR486C	NPA3	P47122	385 aa		12.47	□□□□□ -0.41
VPS60	YDR486C	ARP5	P53946	755 aa		12.47	□□□□□ -0.41
VPS60	YDR486C	EST2	Q06163	884 aa		12.47	□□□□□ -0.41
VPS60	YDR486C	ADP1	P25371	1049 aa		12.46	□□□□□ -0.41
VPS60	YDR486C	AAD16	Q02895	342 aa		12.46	□□□□□ -0.41
VPS60	YDR486C	PRO3	P32263	286 aa	Known RBP	12.45	□□□□□ -0.42
VPS60	YDR486C	IME2	P32581	645 aa		12.45	□□□□□ -0.42
VPS60	YDR486C	TFC6	Q06339	672 aa		12.45	□□□□□ -0.42
VPS60	YDR486C	MATALPHA2	P0CY08	210 aa		12.44	□□□□□ -0.42
VPS60	YDR486C	HMLALPHA2	P0CY09	210 aa		12.44	□□□□□ -0.42
VPS60	YDR486C	RIT1	P23796	513 aa		12.44	□□□□□ -0.42
VPS60	YDR486C	KEL1	P38853	1164 aa	Known RBP	12.44	□□□□□ -0.42
VPS60	YDR486C	YKE2	P52553	114 aa		12.44	□□□□□ -0.42
VPS60	YDR486C	PMA1	P05030	918 aa	Known RBP	12.43	□□□□□ -0.42
VPS60	YDR486C	RPL19A	P0CX82	189 aa	Known RBP	12.43	□□□□□ -0.42
VPS60	YDR486C	RPL19B	P0CX83	189 aa	Predicted RBP	12.43	□□□□□ -0.42
VPS60	YDR486C	KIN1	P13185	1064 aa		12.43	□□□□□ -0.42
VPS60	YDR486C	RAD53	P22216	821 aa		12.43	□□□□□ -0.42
VPS60	YDR486C	PRE8	P23639	250 aa		12.43	□□□□□ -0.42
VPS60	YDR486C	SIS2	P36024	562 aa		12.43	□□□□□ -0.42
VPS60	YDR486C	YBL028C	P38202	106 aa		12.43	□□□□□ -0.42
VPS60	YDR486C	NIT1	P40447	199 aa		12.43	□□□□□ -0.42
VPS60	YDR486C	CTF18	P49956	741 aa		12.43	□□□□□ -0.42
VPS60	YDR486C	YDL124W	Q07551	312 aa	Known RBP	12.43	□□□□□ -0.42
VPS60	YDR486C	SRM1	P21827	482 aa		12.42	□□□□□ -0.42
VPS60	YDR486C	LSP1	Q12230	341 aa	Known RBP	12.42	□□□□□ -0.42
VPS60	YDR486C	MPH3	P0CE00	602 aa		12.41	□□□□□ -0.42
VPS60	YDR486C	MAK31	P23059	88 aa		12.41	□□□□□ -0.42
VPS60	YDR486C	VPS8	P39702	1274 aa		12.41	□□□□□ -0.42
VPS60	YDR486C	CSM2	P40465	213 aa		12.41	□□□□□ -0.42
VPS60	YDR486C	AKR1	P39010	764 aa		12.4	□□□□□ -0.42
VPS60	YDR486C	EPL1	P43572	832 aa		12.4	□□□□□ -0.42
VPS60	YDR486C	ENT3	P47160	408 aa		12.4	□□□□□ -0.42
VPS60	YDR486C	MYO5	Q04439	1219 aa	Known RBP	12.4	□□□□□ -0.42
VPS60	YDR486C	YLR407W	Q06070	228 aa		12.4	□□□□□ -0.42
VPS60	YDR486C	CHS3	P29465	1165 aa		12.39	□□□□□ -0.43
VPS60	YDR486C	VPS24	P36095	224 aa	Known RBP	12.39	□□□□□ -0.43
VPS60	YDR486C	CST26	P38226	397 aa		12.39	□□□□□ -0.43
VPS60	YDR486C	YHL017W	P38745	532 aa		12.39	□□□□□ -0.43
VPS60	YDR486C	PEA2	P40091	420 aa		12.39	□□□□□ -0.43
VPS60	YDR486C	SKG3	Q06315	1026 aa		12.39	□□□□□ -0.43
VPS60	YDR486C	PSK2	Q08217	1101 aa		12.39	□□□□□ -0.43
VPS60	YDR486C	CSR2	Q12734	1121 aa		12.39	□□□□□ -0.43
VPS60	YDR486C	TUB2	P02557	457 aa	Known RBP	12.38	□□□□□ -0.43
VPS60	YDR486C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	12.38	□□□□□ -0.43	not detected
VPS60	YDR486C	ACE2	P21192	770 aa		12.38	□□□□□ -0.43
VPS60	YDR486C	VHR2	P40041	505 aa		12.38	□□□□□ -0.43
VPS60	YDR486C	SNU71	P53207	620 aa	Known RBP	12.38	□□□□□ -0.43
VPS60	YDR486C	UBP10	P53874	792 aa	Predicted RBP	12.38	□□□□□ -0.43
VPS60	YDR486C	RPT6	Q01939	405 aa	Known RBP	12.38	□□□□□ -0.43
VPS60	YDR486C	YOR111W	Q99210	232 aa		12.38	□□□□□ -0.43
VPS60	YDR486C	BIK1	P11709	440 aa		12.37	□□□□□ -0.43
VPS60	YDR486C	TTI1	P36097	1038 aa		12.36	□□□□□ -0.43
VPS60	YDR486C	DJP1	P40564	432 aa		12.36	□□□□□ -0.43
VPS60	YDR486C	BUD6	P41697	788 aa		12.36	□□□□□ -0.43
VPS60	YDR486C	ALG2	P43636	503 aa		12.36	□□□□□ -0.43
VPS60	YDR486C	PEX21	P50091	288 aa		12.36	□□□□□ -0.43
VPS60	YDR486C	CWC15	Q03772	175 aa	Known RBP	12.36	□□□□□ -0.43
VPS60	YDR486C	HRQ1	Q05549	1077 aa		12.36	□□□□□ -0.43
VPS60	YDR486C	ISW2	Q08773	1120 aa		12.36	□□□□□ -0.43
VPS60	YDR486C	ELG1	Q12050	791 aa		12.36	□□□□□ -0.43
VPS60	YDR486C	CPA2	P03965	1118 aa	Known RBP	12.35	□□□□□ -0.43
VPS60	YDR486C	GAL2	P13181	574 aa		12.35	□□□□□ -0.43
VPS60	YDR486C	SSA4	P22202	642 aa	Known RBP	12.35	□□□□□ -0.43
VPS60	YDR486C	RPL8B	P29453	256 aa	Known RBP	12.35	□□□□□ -0.43
VPS60	YDR486C	MAL31	P38156	614 aa		12.35	□□□□□ -0.43

Retrieved 100 of 5,963 RNA–protein pairs in 40.1 ms