RNA–Protein interactions for RNA: YBR278W

DPB3, Transcript of Third-largest subunit of DNA polymerase II (DNA polymerase epsilon), yeast

Gene DPB3, Length 606 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DPB3	YBR278W	KAP122	P32767	1081 aa		4.63	□□□□□ -1.67
DPB3	YBR278W	PET112	P33893	541 aa		4.63	□□□□□ -1.67
DPB3	YBR278W	ISW1	P38144	1129 aa		4.63	□□□□□ -1.67
DPB3	YBR278W	GIP1	P38229	639 aa		4.63	□□□□□ -1.67
DPB3	YBR278W	VAC8	P39968	578 aa		4.63	□□□□□ -1.67
DPB3	YBR278W	MTO1	P53070	669 aa		4.63	□□□□□ -1.67
DPB3	YBR278W	NSG2	P53898	299 aa		4.63	□□□□□ -1.67
DPB3	YBR278W	ALD3	P54114	506 aa		4.63	□□□□□ -1.67
DPB3	YBR278W	INP54	Q08227	384 aa	Known RBP	4.63	□□□□□ -1.67
DPB3	YBR278W	PSH1	Q12161	406 aa		4.63	□□□□□ -1.67
DPB3	YBR278W	RAD2	P07276	1031 aa		4.62	□□□□□ -1.67
DPB3	YBR278W	PDC6	P26263	563 aa	Known RBP	4.62	□□□□□ -1.67
DPB3	YBR278W	SLA1	P32790	1244 aa		4.62	□□□□□ -1.67
DPB3	YBR278W	YHL008C	P38750	627 aa		4.62	□□□□□ -1.67
DPB3	YBR278W	UBP15	P50101	1230 aa		4.62	□□□□□ -1.67
DPB3	YBR278W	SSF2	Q12153	453 aa	Predicted RBP	4.62	□□□□□ -1.67
DPB3	YBR278W	FLP1	P03870	423 aa		4.61	□□□□□ -1.67
DPB3	YBR278W	AI1	P03875	834 aa		4.61	□□□□□ -1.67
DPB3	YBR278W	LEU1	P07264	779 aa	Known RBP	4.61	□□□□□ -1.67
DPB3	YBR278W	PRP40	P33203	583 aa	Known RBP	4.61	□□□□□ -1.67
DPB3	YBR278W	MDJ1	P35191	511 aa		4.61	□□□□□ -1.67
DPB3	YBR278W	MNR2	P35724	969 aa		4.61	□□□□□ -1.67
DPB3	YBR278W	YBR287W	P38355	427 aa		4.61	□□□□□ -1.67
DPB3	YBR278W	LSB3	P43603	459 aa	Known RBP	4.61	□□□□□ -1.67
DPB3	YBR278W	YMR265C	Q03508	461 aa	Known RBP	4.61	□□□□□ -1.67
DPB3	YBR278W	DAL4	Q04895	635 aa		4.61	□□□□□ -1.67
DPB3	YBR278W	YOL098C	Q12496	1037 aa		4.61	□□□□□ -1.67
DPB3	YBR278W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
DPB3	YBR278W	CUS1	Q02554	436 aa	Predicted RBP	4.6	□□□□□ -1.67
DPB3	YBR278W	THI72	Q08579	599 aa		4.6	□□□□□ -1.67
DPB3	YBR278W	MCD1	Q12158	566 aa		4.6	□□□□□ -1.67
DPB3	YBR278W	COB	P00163	385 aa		4.59	□□□□□ -1.67
DPB3	YBR278W	DIT1	P21623	536 aa		4.59	□□□□□ -1.67
DPB3	YBR278W	PRE9	P23638	258 aa	Known RBP	4.59	□□□□□ -1.67
DPB3	YBR278W	AIM46	P38885	310 aa		4.59	□□□□□ -1.67
DPB3	YBR278W	SKP1	P52286	194 aa		4.59	□□□□□ -1.67
DPB3	YBR278W	MSH6	Q03834	1242 aa		4.59	□□□□□ -1.67
DPB3	YBR278W	YCS4	Q06156	1176 aa		4.59	□□□□□ -1.67
DPB3	YBR278W	KAR2	P16474	682 aa	Known RBP	4.58	□□□□□ -1.68
DPB3	YBR278W	RGP1	P16664	663 aa		4.58	□□□□□ -1.68
DPB3	YBR278W	MCM5	P29496	775 aa	Known RBP	4.58	□□□□□ -1.68
DPB3	YBR278W	YJL049W	P47048	450 aa		4.58	□□□□□ -1.68
DPB3	YBR278W	KRE33	P53914	1056 aa	Known RBP	4.58	□□□□□ -1.68
DPB3	YBR278W	ADE12	P80210	433 aa	Known RBP	4.58	□□□□□ -1.68
DPB3	YBR278W	CTR9	P89105	1077 aa		4.58	□□□□□ -1.68
DPB3	YBR278W	YPL109C	Q02981	657 aa		4.58	□□□□□ -1.68
DPB3	YBR278W	EMG1	Q06287	252 aa	Known RBP	4.58	□□□□□ -1.68
DPB3	YBR278W	UGA4	P32837	571 aa		4.57	□□□□□ -1.68
DPB3	YBR278W	MRPS18	P42847	217 aa		4.57	□□□□□ -1.68
DPB3	YBR278W	IOC3	P43596	787 aa		4.57	□□□□□ -1.68
DPB3	YBR278W	ITC1	P53125	1264 aa		4.57	□□□□□ -1.68
DPB3	YBR278W	PYC2	P32327	1180 aa	Known RBP	4.56	□□□□□ -1.68
DPB3	YBR278W	ECM2	P38241	364 aa	Known RBP	4.56	□□□□□ -1.68
DPB3	YBR278W	YIL165C	P40446	119 aa		4.56	□□□□□ -1.68
DPB3	YBR278W	MON1	P53129	644 aa		4.56	□□□□□ -1.68
DPB3	YBR278W	CWC24	P53769	259 aa		4.56	□□□□□ -1.68
DPB3	YBR278W	SYT1	Q06836	1226 aa		4.56	□□□□□ -1.68
DPB3	YBR278W	WRS1	Q12109	432 aa	Known RBP	4.56	□□□□□ -1.68
DPB3	YBR278W	CDC34	P14682	295 aa		4.55	□□□□□ -1.68
DPB3	YBR278W	BRN1	P38170	754 aa		4.55	□□□□□ -1.68
DPB3	YBR278W	APM2	P38700	605 aa		4.55	□□□□□ -1.68
DPB3	YBR278W	FAA4	P47912	694 aa	Known RBP	4.55	□□□□□ -1.68
DPB3	YBR278W	NUT1	P53114	1132 aa		4.55	□□□□□ -1.68
DPB3	YBR278W	DOS2	P54858	310 aa		4.55	□□□□□ -1.68
DPB3	YBR278W	ULP1	Q02724	621 aa		4.55	□□□□□ -1.68
DPB3	YBR278W	ADI1	Q03677	179 aa		4.55	□□□□□ -1.68
DPB3	YBR278W	YDR461C-A	Q2V2P7	80 aa		4.55	□□□□□ -1.68
DPB3	YBR278W	DUT1	P33317	147 aa		4.54	□□□□□ -1.68
DPB3	YBR278W	DUR3	P33413	735 aa		4.54	□□□□□ -1.68
DPB3	YBR278W	SPC42	P36094	363 aa		4.54	□□□□□ -1.68
DPB3	YBR278W	NMD2	P38798	1089 aa	Known RBP	4.54	□□□□□ -1.68
DPB3	YBR278W	PIC2	P40035	300 aa		4.54	□□□□□ -1.68
DPB3	YBR278W	GDE1	Q02979	1223 aa		4.54	□□□□□ -1.68
DPB3	YBR278W	IOC4	Q04213	475 aa		4.54	□□□□□ -1.68
DPB3	YBR278W	NSE3	Q05541	303 aa		4.54	□□□□□ -1.68
DPB3	YBR278W	PMT7	Q06644	662 aa		4.54	□□□□□ -1.68
DPB3	YBR278W	SRP40	P32583	406 aa	Predicted RBP	4.53	□□□□□ -1.68
DPB3	YBR278W	YKL091C	P33324	310 aa	Known RBP	4.53	□□□□□ -1.68
DPB3	YBR278W	NCL1	P38205	684 aa	Known RBP	4.53	□□□□□ -1.68
DPB3	YBR278W	YER156C	P40093	338 aa	Known RBP	4.53	□□□□□ -1.68
DPB3	YBR278W	YFL066C	P43538	392 aa		4.53	□□□□□ -1.68
DPB3	YBR278W	SAP155	P43612	1002 aa		4.53	□□□□□ -1.68
DPB3	YBR278W	YNR040W	P53736	256 aa		4.53	□□□□□ -1.68
DPB3	YBR278W	YPR053C	Q6Q5F3	151 aa		4.53	□□□□□ -1.68
DPB3	YBR278W	IDI1	P15496	288 aa		4.52	□□□□□ -1.69
DPB3	YBR278W	FPS1	P23900	669 aa		4.52	□□□□□ -1.69
DPB3	YBR278W	RIM11	P38615	370 aa		4.52	□□□□□ -1.69
DPB3	YBR278W	RVS167	P39743	482 aa	Known RBP	4.52	□□□□□ -1.69
DPB3	YBR278W	RSM26	P47141	266 aa		4.52	□□□□□ -1.69
DPB3	YBR278W	PPT1	P53043	513 aa		4.52	□□□□□ -1.69
DPB3	YBR278W	BDF2	Q07442	638 aa		4.52	□□□□□ -1.69
DPB3	YBR278W	CDC53	Q12018	815 aa	Known RBP	4.52	□□□□□ -1.69
DPB3	YBR278W	CMR1	Q12510	522 aa	Known RBP	4.52	□□□□□ -1.69
DPB3	YBR278W	RPP1A	P05318	106 aa	Predicted RBP	4.51	□□□□□ -1.69
DPB3	YBR278W	FUS1	P11710	512 aa		4.51	□□□□□ -1.69
DPB3	YBR278W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.51	□□□□□ -1.69	not detected
DPB3	YBR278W	SQT1	P35184	431 aa		4.51	□□□□□ -1.69
DPB3	YBR278W	MRPL16	P38064	232 aa		4.51	□□□□□ -1.69
DPB3	YBR278W	TAT2	P38967	592 aa		4.51	□□□□□ -1.69
DPB3	YBR278W	XKS1	P42826	600 aa		4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 62.2 ms