RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 PLEKHH1Q9ULM0 1364 aa8.51□□□□□ -1.05
SCN1A-213ENST00000636759 HAP1P54257 671 aaPredicted RBP8.5□□□□□ -1.05
SCN1A-213ENST00000636759 CD109Q6YHK3 1445 aa8.5□□□□□ -1.05
SCN1A-213ENST00000636759 HMGN5P82970 282 aaKnown RBP8.5□□□□□ -1.05
SCN1A-213ENST00000636759 USP19O94966 1318 aa8.5□□□□□ -1.05
SCN1A-213ENST00000636759 MAPK8IP3Q9UPT6 1336 aa8.5□□□□□ -1.05
SCN1A-213ENST00000636759 IGSF3O75054 1194 aa8.5□□□□□ -1.05
SCN1A-213ENST00000636759 MCM5P33992 734 aa8.5□□□□□ -1.05
SCN1A-213ENST00000636759 IRX5P78411 483 aaPredicted RBP8.5□□□□□ -1.05
SCN1A-213ENST00000636759 NLRP13Q86W25 1043 aa8.5□□□□□ -1.05
SCN1A-213ENST00000636759 HSCBQ8IWL3 235 aa8.5□□□□□ -1.05
SCN1A-213ENST00000636759 RIMBP3CA6NJZ7 1639 aa8.49□□□□□ -1.05
SCN1A-213ENST00000636759 RIMBP3BA6NNM3 1639 aa8.49□□□□□ -1.05
SCN1A-213ENST00000636759 RIMBP3Q9UFD9 1639 aa8.49□□□□□ -1.05
SCN1A-213ENST00000636759 CERS3Q8IU89 383 aa8.49□□□□□ -1.05
SCN1A-213ENST00000636759 PIK3C2GO75747 1445 aa8.49□□□□□ -1.05
SCN1A-213ENST00000636759 TRMT2AQ8IZ69 625 aaKnown RBP8.49□□□□□ -1.05
SCN1A-213ENST00000636759 CDCA7LQ96GN5 454 aa8.49□□□□□ -1.05
SCN1A-213ENST00000636759 ZKSCAN5Q9Y2L8 839 aa8.49□□□□□ -1.05
SCN1A-213ENST00000636759 ASXL1Q8IXJ9 1541 aa8.49□□□□□ -1.05
SCN1A-213ENST00000636759 MYOM2P54296 1465 aa8.49□□□□□ -1.05
SCN1A-213ENST00000636759 CLGNO14967 610 aa8.49□□□□□ -1.05
SCN1A-213ENST00000636759 PTMAP06454 111 aaKnown RBP8.49□□□□□ -1.05
SCN1A-213ENST00000636759 SPDYE4A6NLX3 237 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 NPC1L1Q9UHC9 1359 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 DIP2CQ9Y2E4 1556 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 C20orf194Q5TEA3 1177 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 TIGD1Q96MW7 591 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 SETBP1Q9Y6X0 1596 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 SIGLEC1Q9BZZ2 1709 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 TNNT3P45378 269 aaPredicted RBP8.48□□□□□ -1.05
SCN1A-213ENST00000636759 PDCL2Q8N4E4 241 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 MYRIPQ8NFW9 859 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 HDAC5Q9UQL6 1122 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 ERVK-7P63135 1459 aa8.48□□□□□ -1.05
SCN1A-213ENST00000636759 PIK3C2BO00750 1634 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 IQSEC2Q5JU85 1478 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 NLRP1Q9C000 1473 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 SEC24BO95487 1268 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 SLC20A2Q08357 652 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.47□□□□□ -1.055e-7■■■□□ 16.6
SCN1A-213ENST00000636759 CAMSAP1Q5T5Y3 1602 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 TSPYL1Q9H0U9 437 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 CCDC39Q9UFE4 941 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 KIF3AQ9Y496 699 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 ADGRB3O60242 1522 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 QRICH2Q9H0J4 1663 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 ZBTB7CA1YPR0 619 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 TBC1D32Q96NH3 1257 aa8.47□□□□□ -1.05
SCN1A-213ENST00000636759 ATP2B3Q16720 1220 aa8.46□□□□□ -1.05
SCN1A-213ENST00000636759 PRIMPOLQ96LW4 560 aa8.46□□□□□ -1.05
SCN1A-213ENST00000636759 PANK3Q9H999 370 aa8.46□□□□□ -1.05
SCN1A-213ENST00000636759 SCAF11Q99590 1463 aaKnown RBP8.46□□□□□ -1.05
SCN1A-213ENST00000636759 ADGRB1O14514 1584 aa8.46□□□□□ -1.06
SCN1A-213ENST00000636759 UGGT1Q9NYU2 1555 aa8.46□□□□□ -1.06
SCN1A-213ENST00000636759 RNF216Q9NWF9 866 aaPredicted RBP8.46□□□□□ -1.06
SCN1A-213ENST00000636759 DIP2BQ9P265 1576 aa8.46□□□□□ -1.06
SCN1A-213ENST00000636759 TRIM6-TRIM34B2RNG4 842 aa8.46□□□□□ -1.06
SCN1A-213ENST00000636759 KIAA2012Q0VF49 1180 aa8.46□□□□□ -1.06
SCN1A-213ENST00000636759 TRIM34Q9BYJ4 488 aa8.46□□□□□ -1.06
SCN1A-213ENST00000636759 DDX49Q9Y6V7 483 aaKnown RBP8.46□□□□□ -1.06
SCN1A-213ENST00000636759 KANK1Q14678 1352 aa8.45□□□□□ -1.06
SCN1A-213ENST00000636759 SAMD1Q6SPF0 538 aaPredicted RBP8.45□□□□□ -1.06
SCN1A-213ENST00000636759 ARHGEF28Q8N1W1 1705 aaKnown RBP8.45□□□□□ -1.06
SCN1A-213ENST00000636759 ABCC3O15438 1527 aa8.45□□□□□ -1.06
SCN1A-213ENST00000636759 WWC1Q8IX03 1113 aa8.45□□□□□ -1.06
SCN1A-213ENST00000636759 CNPY4Q8N129 248 aa8.45□□□□□ -1.06
SCN1A-213ENST00000636759 ADGRB2O60241 1585 aa8.45□□□□□ -1.06
SCN1A-213ENST00000636759 KDM2AQ9Y2K7 1162 aa8.44□□□□□ -1.06
SCN1A-213ENST00000636759 NPM1P06748 294 aaKnown RBP eCLIP8.44□□□□□ -1.06
SCN1A-213ENST00000636759 DUSP27Q5VZP5 1158 aa8.44□□□□□ -1.06
SCN1A-213ENST00000636759 CALCOCO1Q9P1Z2 691 aa8.44□□□□□ -1.06
SCN1A-213ENST00000636759 ANKRD26Q9UPS8 1709 aa8.44□□□□□ -1.06
SCN1A-213ENST00000636759 AXDND1Q5T1B0 1012 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-213ENST00000636759 TNPO1Q92973 898 aaKnown RBP8.43□□□□□ -1.06
SCN1A-213ENST00000636759 HSP90AB1P08238 724 aaKnown RBP8.43□□□□□ -1.06
SCN1A-213ENST00000636759 RBM25P49756 843 aaKnown RBP8.43□□□□□ -1.06
SCN1A-213ENST00000636759 GABPB1Q06547 395 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-213ENST00000636759 HOMEZQ8IX15 550 aa8.43□□□□□ -1.06
SCN1A-213ENST00000636759 TSC1Q92574 1164 aa8.43□□□□□ -1.06
SCN1A-213ENST00000636759 REREQ9P2R6 1566 aa8.43□□□□□ -1.06
SCN1A-213ENST00000636759 CHAF1AQ13111 956 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-213ENST00000636759 CIZ1Q9ULV3 898 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-213ENST00000636759 FEZ1Q99689 392 aa8.42□□□□□ -1.06
SCN1A-213ENST00000636759 NPATQ14207 1427 aa8.42□□□□□ -1.06
SCN1A-213ENST00000636759 KIF3BO15066 747 aa8.42□□□□□ -1.06
SCN1A-213ENST00000636759 PATL2C9JE40 543 aaKnown RBP8.42□□□□□ -1.06
SCN1A-213ENST00000636759 RGL3Q3MIN7 710 aa8.41□□□□□ -1.06
SCN1A-213ENST00000636759 CC2D1BQ5T0F9 858 aaKnown RBP8.41□□□□□ -1.06
SCN1A-213ENST00000636759 ZNF710Q8N1W2 664 aa8.41□□□□□ -1.06
SCN1A-213ENST00000636759 ZNF622Q969S3 477 aaKnown RBP eCLIP8.41□□□□□ -1.06
SCN1A-213ENST00000636759 NOS1P29475 1434 aa8.41□□□□□ -1.06
SCN1A-213ENST00000636759 U2AF2P26368 475 aaKnown RBP eCLIP8.41□□□□□ -1.062e-6■□□□□ 9.7
SCN1A-213ENST00000636759 FAM193AP78312 1265 aa8.41□□□□□ -1.06
SCN1A-213ENST00000636759 C22orf23Q9BZE7 217 aa8.41□□□□□ -1.06
SCN1A-213ENST00000636759 ARHGAP31Q2M1Z3 1444 aa8.41□□□□□ -1.06
SCN1A-213ENST00000636759 NINLQ9Y2I6 1382 aa8.41□□□□□ -1.06
SCN1A-213ENST00000636759 PPP2R1AP30153 589 aa8.41□□□□□ -1.06
SCN1A-213ENST00000636759 OGFRQ9NZT2 677 aa8.41□□□□□ -1.06
SCN1A-213ENST00000636759 ADAMTS8Q9UP79 889 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms