RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 SIRT1Q96EB6 747 aa15.58■□□□□ 0.09
LINC00538-201ENST00000626109 ROBO2Q9HCK4 1378 aa15.58■□□□□ 0.08
LINC00538-201ENST00000626109 NAP1L5Q96NT1 182 aaPredicted RBP15.58■□□□□ 0.08
LINC00538-201ENST00000626109 PRAM1Q96QH2 718 aa15.58■□□□□ 0.08
LINC00538-201ENST00000626109 ZNF335Q9H4Z2 1342 aaPredicted RBP15.58■□□□□ 0.08
LINC00538-201ENST00000626109 CENPJQ9HC77 1338 aaPredicted RBP15.58■□□□□ 0.08
LINC00538-201ENST00000626109 E9PSI1 815 aa15.57■□□□□ 0.08
LINC00538-201ENST00000626109 HSPA5P11021 654 aaKnown RBP15.57■□□□□ 0.08
LINC00538-201ENST00000626109 ST20-MTHFSA0A0A6YYL1 179 aa15.56■□□□□ 0.08
LINC00538-201ENST00000626109 HIRIP3Q9BW71 556 aaPredicted RBP15.56■□□□□ 0.08
LINC00538-201ENST00000626109 STRCP1A6NGW2 1772 aa15.55■□□□□ 0.08
LINC00538-201ENST00000626109 WAPLQ7Z5K2 1190 aa15.55■□□□□ 0.08
LINC00538-201ENST00000626109 PLEKHH1Q9ULM0 1364 aa15.55■□□□□ 0.08
LINC00538-201ENST00000626109 SAFB2Q14151 953 aaKnown RBP eCLIP15.55■□□□□ 0.08
LINC00538-201ENST00000626109 PROSER2Q86WR7 435 aaPredicted RBP15.55■□□□□ 0.08
LINC00538-201ENST00000626109 CCDC82Q8N4S0 544 aa15.54■□□□□ 0.08
LINC00538-201ENST00000626109 QRICH2Q9H0J4 1663 aa15.54■□□□□ 0.08
LINC00538-201ENST00000626109 SBNO2Q9Y2G9 1366 aa15.53■□□□□ 0.08
LINC00538-201ENST00000626109 ZNF526Q8TF50 670 aaPredicted RBP15.52■□□□□ 0.07
LINC00538-201ENST00000626109 SLC24A3Q9HC58 644 aa15.52■□□□□ 0.07
LINC00538-201ENST00000626109 MINK1Q8N4C8 1332 aaPredicted RBP15.51■□□□□ 0.07
LINC00538-201ENST00000626109 TMEM94Q12767 1356 aa15.5■□□□□ 0.07
LINC00538-201ENST00000626109 LRRC7Q96NW7 1537 aa15.5■□□□□ 0.07
LINC00538-201ENST00000626109 TESK2Q96S53 571 aa15.5■□□□□ 0.07
LINC00538-201ENST00000626109 GZF1Q9H116 711 aaPredicted RBP15.5■□□□□ 0.07
LINC00538-201ENST00000626109 NCOA3Q9Y6Q9 1424 aa15.5■□□□□ 0.07
LINC00538-201ENST00000626109 RBM33Q96EV2 1170 aaKnown RBP15.49■□□□□ 0.07
LINC00538-201ENST00000626109 LTBP4Q8N2S1 1624 aa15.49■□□□□ 0.07
LINC00538-201ENST00000626109 ADGRL3Q9HAR2 1447 aa15.49■□□□□ 0.07
LINC00538-201ENST00000626109 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.48■□□□□ 0.07
LINC00538-201ENST00000626109 ADGRB2O60241 1585 aa15.48■□□□□ 0.07
LINC00538-201ENST00000626109 TMF1P82094 1093 aa15.48■□□□□ 0.07
LINC00538-201ENST00000626109 CC2D2BQ6DHV5 1058 aa15.47■□□□□ 0.07
LINC00538-201ENST00000626109 NALCNQ8IZF0 1738 aa15.47■□□□□ 0.07
LINC00538-201ENST00000626109 EVC2Q86UK5 1308 aa15.47■□□□□ 0.07
LINC00538-201ENST00000626109 MSH6P52701 1360 aa15.45■□□□□ 0.06
LINC00538-201ENST00000626109 PRDM16Q9HAZ2 1276 aa15.45■□□□□ 0.06
LINC00538-201ENST00000626109 TULP4Q9NRJ4 1543 aa15.45■□□□□ 0.06
LINC00538-201ENST00000626109 CDC42BPGQ6DT37 1551 aa15.45■□□□□ 0.06
LINC00538-201ENST00000626109 CDCA8Q53HL2 280 aa15.45■□□□□ 0.06
LINC00538-201ENST00000626109 TRAIPQ9BWF2 469 aa15.45■□□□□ 0.06
LINC00538-201ENST00000626109 DISP3Q9P2K9 1392 aa15.44■□□□□ 0.06
LINC00538-201ENST00000626109 WASLO00401 505 aaPredicted RBP15.44■□□□□ 0.06
LINC00538-201ENST00000626109 C19orf44Q9H6X5 657 aa15.44■□□□□ 0.06
LINC00538-201ENST00000626109 SRPK2P78362 688 aaKnown RBP15.43■□□□□ 0.06
LINC00538-201ENST00000626109 XIRP1Q702N8 1843 aaKnown RBP15.43■□□□□ 0.06
LINC00538-201ENST00000626109 DCCP43146 1447 aa15.43■□□□□ 0.06
LINC00538-201ENST00000626109 CDK19Q9BWU1 502 aa15.43■□□□□ 0.06
LINC00538-201ENST00000626109 ANO8Q9HCE9 1232 aaPredicted RBP15.43■□□□□ 0.06
LINC00538-201ENST00000626109 ATF3P18847 181 aa15.41■□□□□ 0.06
LINC00538-201ENST00000626109 AAMPQ13685 434 aa15.41■□□□□ 0.06
LINC00538-201ENST00000626109 CADPS2Q86UW7 1296 aa15.4■□□□□ 0.06
LINC00538-201ENST00000626109 CABP2Q9NPB3 220 aa15.4■□□□□ 0.06
LINC00538-201ENST00000626109 C11orf95C9JLR9 678 aaPredicted RBP15.39■□□□□ 0.05
LINC00538-201ENST00000626109 MAPK8IP2Q13387 824 aaPredicted RBP15.39■□□□□ 0.05
LINC00538-201ENST00000626109 KIF7Q2M1P5 1343 aa15.39■□□□□ 0.05
LINC00538-201ENST00000626109 WASHC2AQ641Q2 1341 aa15.39■□□□□ 0.05
LINC00538-201ENST00000626109 FMN2Q9NZ56 1722 aa15.39■□□□□ 0.05
LINC00538-201ENST00000626109 ATAD2Q6PL18 1390 aa15.39■□□□□ 0.05
LINC00538-201ENST00000626109 CCDC7Q96M83 1385 aa15.38■□□□□ 0.05
LINC00538-201ENST00000626109 ANKARQ7Z5J8 1434 aa15.38■□□□□ 0.05
LINC00538-201ENST00000626109 NUTM2FA1L443 756 aa15.37■□□□□ 0.05
LINC00538-201ENST00000626109 CCDC27Q2M243 656 aa15.37■□□□□ 0.05
LINC00538-201ENST00000626109 IQSEC2Q5JU85 1478 aa15.37■□□□□ 0.05
LINC00538-201ENST00000626109 ATP7BP35670 1465 aa15.37■□□□□ 0.05
LINC00538-201ENST00000626109 NUDT16Q96DE0 195 aaKnown RBP15.37■□□□□ 0.05
LINC00538-201ENST00000626109 PRDM10Q9NQV6 1147 aa15.37■□□□□ 0.05
LINC00538-201ENST00000626109 KDM4AO75164 1064 aa15.36■□□□□ 0.05
LINC00538-201ENST00000626109 PRR36Q9H6K5 1346 aa15.35■□□□□ 0.05
LINC00538-201ENST00000626109 MKRN3Q13064 507 aaKnown RBP15.35■□□□□ 0.05
LINC00538-201ENST00000626109 MST1RQ04912 1400 aa15.35■□□□□ 0.05
LINC00538-201ENST00000626109 CERKQ8TCT0 537 aa15.35■□□□□ 0.05
LINC00538-201ENST00000626109 NINLQ9Y2I6 1382 aa15.34■□□□□ 0.05
LINC00538-201ENST00000626109 USP32Q8NFA0 1604 aa15.34■□□□□ 0.05
LINC00538-201ENST00000626109 NCLP19338 710 aaKnown RBP15.34■□□□□ 0.05
LINC00538-201ENST00000626109 CCDC61Q9Y6R9 512 aa15.34■□□□□ 0.05
LINC00538-201ENST00000626109 C1orf167Q5SNV9 1468 aa15.34■□□□□ 0.05
LINC00538-201ENST00000626109 ITSN1Q15811 1721 aa15.34■□□□□ 0.05
LINC00538-201ENST00000626109 HNRNPUQ00839 825 aaKnown RBP eCLIP15.33■□□□□ 0.05
LINC00538-201ENST00000626109 TMC1Q8TDI8 760 aa15.33■□□□□ 0.05
LINC00538-201ENST00000626109 ZC3H15Q8WU90 426 aaKnown RBP15.33■□□□□ 0.05
LINC00538-201ENST00000626109 PPIP5K1Q6PFW1 1433 aa15.33■□□□□ 0.04
LINC00538-201ENST00000626109 TOPAZ1Q8N9V7 1692 aa15.33■□□□□ 0.04
LINC00538-201ENST00000626109 IL27Q8NEV9 243 aa15.31■□□□□ 0.04
LINC00538-201ENST00000626109 ESCO1Q5FWF5 840 aa15.31■□□□□ 0.04
LINC00538-201ENST00000626109 CABP1Q9NZU7 370 aa15.31■□□□□ 0.04
LINC00538-201ENST00000626109 SLAIN2Q9P270 581 aa15.31■□□□□ 0.04
LINC00538-201ENST00000626109 MYOM1P52179 1685 aa15.31■□□□□ 0.04
LINC00538-201ENST00000626109 TOM1O60784 492 aa15.29■□□□□ 0.04
LINC00538-201ENST00000626109 CCDC125Q86Z20 511 aa15.29■□□□□ 0.04
LINC00538-201ENST00000626109 SLC12A5Q9H2X9 1139 aa15.29■□□□□ 0.04
LINC00538-201ENST00000626109 PHF8Q9UPP1 1060 aa15.29■□□□□ 0.04
LINC00538-201ENST00000626109 RGPD8O14715 1765 aaPredicted RBP15.29■□□□□ 0.04
LINC00538-201ENST00000626109 PLEKHG3A1L390 1219 aa15.29■□□□□ 0.04
LINC00538-201ENST00000626109 ERICH6BQ5W0A0 696 aa15.29■□□□□ 0.04
LINC00538-201ENST00000626109 KIF1AQ12756 1690 aa15.28■□□□□ 0.04
LINC00538-201ENST00000626109 SLC4A2P04920 1241 aa15.28■□□□□ 0.04
LINC00538-201ENST00000626109 TEX2Q8IWB9 1127 aa15.28■□□□□ 0.04
LINC00538-201ENST00000626109 PMFBP1Q8TBY8 1022 aa15.28■□□□□ 0.04
LINC00538-201ENST00000626109 ORAI2Q96SN7 254 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms