RNA–Protein interactions for RNA: ENST00000617246.4

LPP-220, Transcript of LIM domain containing preferred translocation partner in lipoma, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LPP, Length 18,220 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPP-220ENST00000617246 SAFB2Q14151 953 aaKnown RBP eCLIP4.17□□□□□ -1.74
LPP-220ENST00000617246 JDP2Q8WYK2 163 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 PARP3Q9Y6F1 533 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 BCL2L13Q9BXK5 485 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 FGD6Q6ZV73 1430 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 IKQ13123 557 aaPredicted RBP4.17□□□□□ -1.74
LPP-220ENST00000617246 TAOK2Q9UL54 1235 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 TRPC5Q9UL62 973 aaPredicted RBP4.17□□□□□ -1.74
LPP-220ENST00000617246 A2MP01023 1474 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 PDE6BP35913 854 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 ZMYND15Q9H091 742 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 RRP7BPQ9NSQ0 103 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 TROQ12816 1431 aaPredicted RBP4.17□□□□□ -1.74
LPP-220ENST00000617246 MAP3K4Q9Y6R4 1608 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 RASSF8Q8NHQ8 419 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 USP35Q9P2H5 1018 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 BIN2Q9UBW5 565 aaPredicted RBP4.17□□□□□ -1.74
LPP-220ENST00000617246 KDM2BQ8NHM5 1336 aa4.17□□□□□ -1.74
LPP-220ENST00000617246 TOPAZ1Q8N9V7 1692 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 RPGRQ92834 1020 aaKnown RBP4.16□□□□□ -1.74
LPP-220ENST00000617246 ABCA9Q8IUA7 1624 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 EIF4E1BA6NMX2 242 aaKnown RBP4.16□□□□□ -1.74
LPP-220ENST00000617246 EFCAB6Q5THR3 1501 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.16□□□□□ -1.74
LPP-220ENST00000617246 ERBINQ96RT1 1412 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 PRXQ9BXM0 1461 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 NLRP1Q9C000 1473 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 KIF20BQ96Q89 1820 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 SENP3-EIF4A1A0A087X0R7 540 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 IFT172Q9UG01 1749 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 B4DLN1 442 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 MRPL12P52815 198 aaKnown RBP4.16□□□□□ -1.74
LPP-220ENST00000617246 RBM42Q9BTD8 480 aaKnown RBP4.16□□□□□ -1.74
LPP-220ENST00000617246 USP21Q9UK80 565 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 ERICH2A1L162 156 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 HTATSF1O43719 755 aaKnown RBP4.16□□□□□ -1.74
LPP-220ENST00000617246 ADAMTS2O95450 1211 aa4.16□□□□□ -1.74
LPP-220ENST00000617246 ZBTB24O43167 697 aaPredicted RBP4.16□□□□□ -1.74
LPP-220ENST00000617246 SLC3A2P08195 630 aaKnown RBP4.16□□□□□ -1.74
LPP-220ENST00000617246 NAP1L2Q9ULW6 460 aaPredicted RBP4.16□□□□□ -1.74
LPP-220ENST00000617246 DHX16O60231 1041 aaKnown RBP4.15□□□□□ -1.74
LPP-220ENST00000617246 RBM5P52756 815 aaKnown RBP eCLIP4.15□□□□□ -1.74
LPP-220ENST00000617246 PPP4R3AQ6IN85 833 aa4.15□□□□□ -1.74
LPP-220ENST00000617246 WDR70Q9NW82 654 aa4.15□□□□□ -1.74
LPP-220ENST00000617246 FAM208AQ9UK61 1670 aaKnown RBP4.15□□□□□ -1.74
LPP-220ENST00000617246 TRIM26Q12899 539 aaPredicted RBP4.15□□□□□ -1.74
LPP-220ENST00000617246 BRDTQ58F21 947 aaPredicted RBP4.15□□□□□ -1.74
LPP-220ENST00000617246 SUPT20HQ8NEM7 779 aa4.15□□□□□ -1.74
LPP-220ENST00000617246 ARAP1Q96P48 1450 aa4.15□□□□□ -1.74
LPP-220ENST00000617246 TET3O43151 1660 aa4.15□□□□□ -1.74
LPP-220ENST00000617246 SART3Q15020 963 aaKnown RBP4.15□□□□□ -1.74
LPP-220ENST00000617246 STAC3Q96MF2 364 aa4.15□□□□□ -1.75
LPP-220ENST00000617246 GNL3LQ9NVN8 582 aaKnown RBP4.15□□□□□ -1.75
LPP-220ENST00000617246 C3P01024 1663 aa4.15□□□□□ -1.75
LPP-220ENST00000617246 ZNF142P52746 1687 aaPredicted RBP4.15□□□□□ -1.75
LPP-220ENST00000617246 NAIPQ13075 1403 aa4.15□□□□□ -1.75
LPP-220ENST00000617246 ABTB2Q8N961 1025 aa4.15□□□□□ -1.75
LPP-220ENST00000617246 NOC2LQ9Y3T9 749 aaKnown RBP4.15□□□□□ -1.75
LPP-220ENST00000617246 TNNT2P45379 298 aaPredicted RBP4.15□□□□□ -1.75
LPP-220ENST00000617246 MTIF3Q9H2K0 278 aaKnown RBP4.15□□□□□ -1.75
LPP-220ENST00000617246 E9PSI1 815 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 GLI2P10070 1586 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 HIRIP3Q9BW71 556 aaPredicted RBP4.14□□□□□ -1.75
LPP-220ENST00000617246 KIF3AQ9Y496 699 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 ATF7IPQ6VMQ6 1270 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 SPRYD3Q8NCJ5 442 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 UGGT2Q9NYU1 1516 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 AKAP17AQ02040 695 aaKnown RBP4.14□□□□□ -1.75
LPP-220ENST00000617246 RFC4P35249 363 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 CCDC47Q96A33 483 aaKnown RBP4.14□□□□□ -1.75
LPP-220ENST00000617246 SLC52A1Q9NWF4 448 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 CABP1Q9NZU7 370 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 NKTRP30414 1462 aaKnown RBP4.14□□□□□ -1.75
LPP-220ENST00000617246 VPS8Q8N3P4 1428 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 CGNL1Q0VF96 1302 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 RTEL1-TNFRSF6BF6WH68 1400 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 LTV1Q96GA3 475 aaPredicted RBP4.14□□□□□ -1.75
LPP-220ENST00000617246 COG6Q9Y2V7 657 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 TRIM44Q96DX7 344 aaPredicted RBP4.14□□□□□ -1.75
LPP-220ENST00000617246 RNF216Q9NWF9 866 aaPredicted RBP4.14□□□□□ -1.75
LPP-220ENST00000617246 SLC5A4Q9NY91 659 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 GRIN3BO60391 1043 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 SYNE3Q6ZMZ3 975 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 TNIP1Q15025 636 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 TOMM22Q9NS69 142 aa4.14□□□□□ -1.75
LPP-220ENST00000617246 EXOC5O00471 708 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 MORC1Q86VD1 984 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 SMARCC1Q92922 1105 aaPredicted RBP4.13□□□□□ -1.75
LPP-220ENST00000617246 EHMT1Q9H9B1 1298 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 USP47Q96K76 1375 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 RBM28Q9NW13 759 aaKnown RBP4.13□□□□□ -1.75
LPP-220ENST00000617246 TMEM106CQ9BVX2 250 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 ZNF287Q9HBT7 754 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 HSP90AB3PQ58FF7 597 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 UQCRHLA0A096LP55 91 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 ZNF219Q9P2Y4 722 aaPredicted RBP4.13□□□□□ -1.75
LPP-220ENST00000617246 RDXP35241 583 aaKnown RBP4.13□□□□□ -1.75
LPP-220ENST00000617246 EXOC4Q96A65 974 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 TMOD3Q9NYL9 352 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 NLRP2Q9NX02 1062 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms