RNA–Protein interactions for RNA: ENST00000596378.1

SRRM1-222, Transcript of serine and arginine repetitive matrix 1, human

TSL 1 (best)

Gene SRRM1, Length 2,314 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRRM1-222	ENST00000596378	TNN	Q9UQP3	1299 aa		29.37	■■■□□ 2.29
SRRM1-222	ENST00000596378	ZBTB47	Q9UFB7	747 aa	Predicted RBP	29.36	■■■□□ 2.29
SRRM1-222	ENST00000596378	TXNDC2	Q86VQ3	553 aa		29.35	■■■□□ 2.29
SRRM1-222	ENST00000596378	IGHD	P01880	384 aa		29.34	■■■□□ 2.29
SRRM1-222	ENST00000596378	TSR2	Q969E8	191 aa	Known RBP	29.34	■■■□□ 2.29
SRRM1-222	ENST00000596378	MYH16	Q9H6N6	1097 aa		29.34	■■■□□ 2.29
SRRM1-222	ENST00000596378	TMPO	P42166	694 aa	Known RBP	29.33	■■■□□ 2.29
SRRM1-222	ENST00000596378	RGS3	P49796	1198 aa		29.33	■■■□□ 2.29
SRRM1-222	ENST00000596378	DIAPH1	O60610	1272 aa	Known RBP	29.32	■■■□□ 2.28
SRRM1-222	ENST00000596378	MAPK8IP3	Q9UPT6	1336 aa		29.32	■■■□□ 2.28
SRRM1-222	ENST00000596378	PPM1G	O15355	546 aa	Predicted RBP	29.32	■■■□□ 2.28
SRRM1-222	ENST00000596378	ATP7B	P35670	1465 aa		29.31	■■■□□ 2.28
SRRM1-222	ENST00000596378	RLBP1	P12271	317 aa		29.31	■■■□□ 2.28
SRRM1-222	ENST00000596378	TRIM35	Q9UPQ4	493 aa		29.31	■■■□□ 2.28
SRRM1-222	ENST00000596378	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	29.31	■■■□□ 2.28
SRRM1-222	ENST00000596378	CLUAP1	Q96AJ1	413 aa		29.31	■■■□□ 2.28
SRRM1-222	ENST00000596378	NCBP3	Q53F19	620 aa	Known RBP	29.3	■■■□□ 2.28
SRRM1-222	ENST00000596378	PNPLA6	Q8IY17	1366 aa		29.29	■■■□□ 2.28
SRRM1-222	ENST00000596378	NCKAP5L	Q9HCH0	1330 aa		29.29	■■■□□ 2.28
SRRM1-222	ENST00000596378	WASL	O00401	505 aa	Predicted RBP	29.29	■■■□□ 2.28
SRRM1-222	ENST00000596378	PPIP5K1	Q6PFW1	1433 aa		29.28	■■■□□ 2.28
SRRM1-222	ENST00000596378	TNR	Q92752	1358 aa		29.27	■■■□□ 2.28
SRRM1-222	ENST00000596378	POLK	Q9UBT6	870 aa		29.26	■■■□□ 2.27
SRRM1-222	ENST00000596378	ZRANB1	Q9UGI0	708 aa		29.25	■■■□□ 2.27
SRRM1-222	ENST00000596378	RIPK4	P57078	832 aa		29.24	■■■□□ 2.27
SRRM1-222	ENST00000596378	MAP2	P11137	1827 aa	Known RBP	29.24	■■■□□ 2.27
SRRM1-222	ENST00000596378	EXOSC9	Q06265	439 aa	Known RBP	29.23	■■■□□ 2.27
SRRM1-222	ENST00000596378	NBR1	Q14596	966 aa		29.23	■■■□□ 2.27
SRRM1-222	ENST00000596378	C8orf34	Q49A92	452 aa		29.23	■■■□□ 2.27
SRRM1-222	ENST00000596378	NME9	Q86XW9	330 aa		29.23	■■■□□ 2.27
SRRM1-222	ENST00000596378	LRRC7	Q96NW7	1537 aa		29.22	■■■□□ 2.27
SRRM1-222	ENST00000596378	CPSF1	Q10570	1443 aa	Known RBP	29.22	■■■□□ 2.27
SRRM1-222	ENST00000596378	NUDT16	Q96DE0	195 aa	Known RBP	29.22	■■■□□ 2.27
SRRM1-222	ENST00000596378	UBR1	Q8IWV7	1749 aa		29.22	■■■□□ 2.27
SRRM1-222	ENST00000596378	FAM161A	Q3B820	660 aa		29.21	■■■□□ 2.27
SRRM1-222	ENST00000596378	EMILIN1	Q9Y6C2	1016 aa		29.21	■■■□□ 2.27
SRRM1-222	ENST00000596378	KNDC1	Q76NI1	1749 aa		29.2	■■■□□ 2.26
SRRM1-222	ENST00000596378	EDC4	Q6P2E9	1401 aa	Known RBP	29.19	■■■□□ 2.26
SRRM1-222	ENST00000596378	TMEM2	Q9UHN6	1383 aa		29.19	■■■□□ 2.26
SRRM1-222	ENST00000596378	PRKAR2B	P31323	418 aa		29.18	■■■□□ 2.26
SRRM1-222	ENST00000596378	PCDHB15	Q9Y5E8	787 aa		29.18	■■■□□ 2.26
SRRM1-222	ENST00000596378	CDC42BPG	Q6DT37	1551 aa		29.18	■■■□□ 2.26
SRRM1-222	ENST00000596378	RSPH6A	Q9H0K4	717 aa		29.17	■■■□□ 2.26
SRRM1-222	ENST00000596378	TECPR2	O15040	1411 aa		29.17	■■■□□ 2.26
SRRM1-222	ENST00000596378	HMOX1	P09601	288 aa		29.16	■■■□□ 2.26
SRRM1-222	ENST00000596378	HDGF	P51858	240 aa	Known RBP	29.16	■■■□□ 2.26
SRRM1-222	ENST00000596378	FAM135B	Q49AJ0	1406 aa		29.16	■■■□□ 2.26
SRRM1-222	ENST00000596378	CPS1	P31327	1500 aa		29.16	■■■□□ 2.26
SRRM1-222	ENST00000596378	SMC4	Q9NTJ3	1288 aa		29.16	■■■□□ 2.26
SRRM1-222	ENST00000596378	FCHSD2	O94868	740 aa		29.15	■■■□□ 2.26
SRRM1-222	ENST00000596378	ROBO2	Q9HCK4	1378 aa		29.15	■■■□□ 2.26
SRRM1-222	ENST00000596378	CEBPA	P49715	358 aa	Predicted RBP	29.14	■■■□□ 2.25
SRRM1-222	ENST00000596378	ZKSCAN2	Q63HK3	967 aa		29.14	■■■□□ 2.25
SRRM1-222	ENST00000596378	CCDC61	Q9Y6R9	512 aa		29.14	■■■□□ 2.25
SRRM1-222	ENST00000596378	PRR36	Q9H6K5	1346 aa		29.13	■■■□□ 2.25
SRRM1-222	ENST00000596378	SSH1	Q8WYL5	1049 aa		29.13	■■■□□ 2.25
SRRM1-222	ENST00000596378	PNN	Q9H307	717 aa	Known RBP	29.13	■■■□□ 2.25
SRRM1-222	ENST00000596378	IL16	Q14005	1332 aa		29.12	■■■□□ 2.25
SRRM1-222	ENST00000596378	MON2	Q7Z3U7	1717 aa		29.12	■■■□□ 2.25
SRRM1-222	ENST00000596378	PHACTR3	Q96KR7	559 aa		29.12	■■■□□ 2.25
SRRM1-222	ENST00000596378	ADAMTS13	Q76LX8	1427 aa		29.12	■■■□□ 2.25
SRRM1-222	ENST00000596378	CT47B1	P0C2W7	299 aa	Predicted RBP	29.11	■■■□□ 2.25
SRRM1-222	ENST00000596378	LTK	P29376	864 aa		29.11	■■■□□ 2.25
SRRM1-222	ENST00000596378	FTSJ3	Q8IY81	847 aa	Known RBP	29.11	■■■□□ 2.25
SRRM1-222	ENST00000596378	MVP	Q14764	893 aa	Known RBP	29.1	■■■□□ 2.25
SRRM1-222	ENST00000596378	RRS1	Q15050	365 aa	Known RBP	29.1	■■■□□ 2.25
SRRM1-222	ENST00000596378	DZIP1L	Q8IYY4	767 aa	Known RBP	29.1	■■■□□ 2.25
SRRM1-222	ENST00000596378	SIRT1	Q96EB6	747 aa		29.1	■■■□□ 2.25
SRRM1-222	ENST00000596378	PLPPR3	Q6T4P5	718 aa		29.09	■■■□□ 2.25
SRRM1-222	ENST00000596378	ITSN1	Q15811	1721 aa		29.09	■■■□□ 2.25
SRRM1-222	ENST00000596378	AKAP12	Q02952	1782 aa		29.08	■■■□□ 2.25
SRRM1-222	ENST00000596378	NUTM2F	A1L443	756 aa		29.08	■■■□□ 2.25
SRRM1-222	ENST00000596378	TRIM27	P14373	513 aa		29.08	■■■□□ 2.25
SRRM1-222	ENST00000596378	PMFBP1	Q8TBY8	1022 aa		29.08	■■■□□ 2.25
SRRM1-222	ENST00000596378	COG3	Q96JB2	828 aa		29.08	■■■□□ 2.25
SRRM1-222	ENST00000596378	IL13	P35225	146 aa		29.08	■■■□□ 2.25
SRRM1-222	ENST00000596378	THUMPD2	Q9BTF0	503 aa	Known RBP	29.07	■■■□□ 2.24
SRRM1-222	ENST00000596378	LAS1L	Q9Y4W2	734 aa	Known RBP	29.06	■■■□□ 2.24
SRRM1-222	ENST00000596378	C3	P01024	1663 aa		29.06	■■■□□ 2.24
SRRM1-222	ENST00000596378	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	29.06	■■■□□ 2.24
SRRM1-222	ENST00000596378	CDK12	Q9NYV4	1490 aa	Predicted RBP	29.06	■■■□□ 2.24
SRRM1-222	ENST00000596378	AAMP	Q13685	434 aa		29.05	■■■□□ 2.24
SRRM1-222	ENST00000596378	NEFM	P07197	916 aa		29.05	■■■□□ 2.24
SRRM1-222	ENST00000596378	NOB1	Q9ULX3	412 aa	Known RBP	29.04	■■■□□ 2.24
SRRM1-222	ENST00000596378	SLC26A8	Q96RN1	970 aa		29.04	■■■□□ 2.24
SRRM1-222	ENST00000596378	DDRGK1	Q96HY6	314 aa		29.03	■■■□□ 2.24
SRRM1-222	ENST00000596378	AATK	Q6ZMQ8	1374 aa		29.03	■■■□□ 2.24
SRRM1-222	ENST00000596378	NFE2L2	Q16236	605 aa		29.03	■■■□□ 2.24
SRRM1-222	ENST00000596378	VIRMA	Q69YN4	1812 aa	Known RBP	29.02	■■■□□ 2.24
SRRM1-222	ENST00000596378	ATF7IP	Q6VMQ6	1270 aa		29.02	■■■□□ 2.24
SRRM1-222	ENST00000596378	PLEKHG1	Q9ULL1	1385 aa		29.01	■■■□□ 2.23
SRRM1-222	ENST00000596378	SLC4A3	P48751	1232 aa		29.01	■■■□□ 2.23
SRRM1-222	ENST00000596378	ITPRIP	Q8IWB1	547 aa		29	■■■□□ 2.23
SRRM1-222	ENST00000596378	PDZRN3	Q9UPQ7	1066 aa		29	■■■□□ 2.23
SRRM1-222	ENST00000596378	RWDD1	Q9H446	243 aa	Predicted RBP	28.99	■■■□□ 2.23
SRRM1-222	ENST00000596378	PTPRU	Q92729	1446 aa		28.98	■■■□□ 2.23
SRRM1-222	ENST00000596378	ZNF692	Q9BU19	519 aa	Predicted RBP	28.98	■■■□□ 2.23
SRRM1-222	ENST00000596378	ACE	P12821	1306 aa		28.97	■■■□□ 2.23
SRRM1-222	ENST00000596378	TMEM57	Q8N5G2	664 aa		28.96	■■■□□ 2.23
SRRM1-222	ENST00000596378	DLG5	Q8TDM6	1919 aa		28.94	■■■□□ 2.22

Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms