RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 BRINP3Q76B58 766 aa22■■□□□ 1.11
SS18-226ENST00000585241 CC2D1BQ5T0F9 858 aaKnown RBP21.99■■□□□ 1.11
SS18-226ENST00000585241 TRPM3Q9HCF6 1732 aaPredicted RBP21.99■■□□□ 1.11
SS18-226ENST00000585241 USP54Q70EL1 1684 aa21.98■■□□□ 1.11
SS18-226ENST00000585241 NPHP3Q7Z494 1330 aa21.97■■□□□ 1.11
SS18-226ENST00000585241 USP31Q70CQ4 1352 aa21.97■■□□□ 1.11
SS18-226ENST00000585241 PIK3C2AO00443 1686 aa21.96■■□□□ 1.11
SS18-226ENST00000585241 FOXO3O43524 673 aa21.96■■□□□ 1.11
SS18-226ENST00000585241 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.96■■□□□ 1.11
SS18-226ENST00000585241 OVOS2A0A0J9YW53 1432 aa21.96■■□□□ 1.11
SS18-226ENST00000585241 OVOS2Q6IE36 1432 aa21.96■■□□□ 1.11
SS18-226ENST00000585241 PXDNQ92626 1479 aa21.96■■□□□ 1.11
SS18-226ENST00000585241 NHSL1Q5SYE7 1610 aa21.95■■□□□ 1.1
SS18-226ENST00000585241 CCER2I3L3R5 266 aa21.95■■□□□ 1.1
SS18-226ENST00000585241 MYBBP1AQ9BQG0 1328 aaKnown RBP21.95■■□□□ 1.1
SS18-226ENST00000585241 PSME1Q06323 249 aa21.94■■□□□ 1.1
SS18-226ENST00000585241 NME9Q86XW9 330 aa21.94■■□□□ 1.1
SS18-226ENST00000585241 SBNO1A3KN83 1393 aa21.94■■□□□ 1.1
SS18-226ENST00000585241 CERKQ8TCT0 537 aa21.93■■□□□ 1.1
SS18-226ENST00000585241 GGNBP2Q9H3C7 697 aa21.93■■□□□ 1.1
SS18-226ENST00000585241 SCAF1Q9H7N4 1312 aaKnown RBP21.93■■□□□ 1.1
SS18-226ENST00000585241 KRT28Q7Z3Y7 464 aa21.92■■□□□ 1.1
SS18-226ENST00000585241 ALS2Q96Q42 1657 aa21.91■■□□□ 1.1
SS18-226ENST00000585241 ROBO1Q9Y6N7 1651 aa21.91■■□□□ 1.1
SS18-226ENST00000585241 MORC1Q86VD1 984 aa21.91■■□□□ 1.1
SS18-226ENST00000585241 MARF1Q9Y4F3 1742 aaKnown RBP21.91■■□□□ 1.1
SS18-226ENST00000585241 AHDC1Q5TGY3 1603 aaPredicted RBP21.91■■□□□ 1.1
SS18-226ENST00000585241 SOS2Q07890 1332 aaPredicted RBP21.9■■□□□ 1.1
SS18-226ENST00000585241 TOM1O60784 492 aa21.9■■□□□ 1.1
SS18-226ENST00000585241 CNGB1Q14028 1251 aaPredicted RBP21.89■■□□□ 1.09
SS18-226ENST00000585241 PPP2R1AP30153 589 aa21.88■■□□□ 1.09
SS18-226ENST00000585241 NLRP13Q86W25 1043 aa21.88■■□□□ 1.09
SS18-226ENST00000585241 COG3Q96JB2 828 aa21.88■■□□□ 1.09
SS18-226ENST00000585241 TNS3Q68CZ2 1445 aa21.88■■□□□ 1.09
SS18-226ENST00000585241 AATKQ6ZMQ8 1374 aa21.87■■□□□ 1.09
SS18-226ENST00000585241 ZRANB1Q9UGI0 708 aa21.87■■□□□ 1.09
SS18-226ENST00000585241 XPCQ01831 940 aaPredicted RBP21.86■■□□□ 1.09
SS18-226ENST00000585241 DDX17Q92841 729 aaKnown RBP21.86■■□□□ 1.09
SS18-226ENST00000585241 ABTB2Q8N961 1025 aa21.85■■□□□ 1.09
SS18-226ENST00000585241 SPATA31A3Q5VYP0 1347 aa21.84■■□□□ 1.09
SS18-226ENST00000585241 SMG6Q86US8 1419 aaKnown RBP21.84■■□□□ 1.09
SS18-226ENST00000585241 PAK3O75914 559 aaPredicted RBP21.84■■□□□ 1.09
SS18-226ENST00000585241 SLIT3O75094 1523 aa21.84■■□□□ 1.09
SS18-226ENST00000585241 USP19O94966 1318 aa21.83■■□□□ 1.09
SS18-226ENST00000585241 MED1Q15648 1581 aaPredicted RBP21.83■■□□□ 1.09
SS18-226ENST00000585241 UBAP1LF5GYI3 381 aa21.82■■□□□ 1.08
SS18-226ENST00000585241 NLRP6P59044 892 aa21.82■■□□□ 1.08
SS18-226ENST00000585241 ARHGEF10O15013 1369 aa21.82■■□□□ 1.08
SS18-226ENST00000585241 CCDC184Q52MB2 194 aa21.81■■□□□ 1.08
SS18-226ENST00000585241 CRYBG1Q9Y4K1 1723 aa21.79■■□□□ 1.08
SS18-226ENST00000585241 NFAT5O94916 1531 aa21.79■■□□□ 1.08
SS18-226ENST00000585241 COL16A1Q07092 1604 aaPredicted RBP21.78■■□□□ 1.08
SS18-226ENST00000585241 TNNT2P45379 298 aaPredicted RBP21.78■■□□□ 1.08
SS18-226ENST00000585241 INSRP06213 1382 aa21.77■■□□□ 1.08
SS18-226ENST00000585241 MRS2Q9HD23 443 aa21.77■■□□□ 1.08
SS18-226ENST00000585241 POLKQ9UBT6 870 aa21.77■■□□□ 1.08
SS18-226ENST00000585241 MAP2P11137 1827 aaKnown RBP21.77■■□□□ 1.08
SS18-226ENST00000585241 PNPLA6Q8IY17 1366 aa21.76■■□□□ 1.07
SS18-226ENST00000585241 NUTM2GQ5VZR2 741 aa21.76■■□□□ 1.07
SS18-226ENST00000585241 CDK12Q9NYV4 1490 aaPredicted RBP21.76■■□□□ 1.07
SS18-226ENST00000585241 PHLPP1O60346 1717 aa21.75■■□□□ 1.07
SS18-226ENST00000585241 MTHFSP49914 203 aa21.75■■□□□ 1.07
SS18-226ENST00000585241 KCNH5Q8NCM2 988 aa21.75■■□□□ 1.07
SS18-226ENST00000585241 PHRF1Q9P1Y6 1649 aaKnown RBP21.75■■□□□ 1.07
SS18-226ENST00000585241 COL3A1P02461 1466 aaPredicted RBP21.75■■□□□ 1.07
SS18-226ENST00000585241 KIF24Q5T7B8 1368 aa21.74■■□□□ 1.07
SS18-226ENST00000585241 LRRC59Q96AG4 307 aaKnown RBP21.73■■□□□ 1.07
SS18-226ENST00000585241 COL22A1Q8NFW1 1626 aaPredicted RBP21.73■■□□□ 1.07
SS18-226ENST00000585241 FBLN1P23142 703 aa21.72■■□□□ 1.07
SS18-226ENST00000585241 PIP4K2BP78356 416 aa21.72■■□□□ 1.07
SS18-226ENST00000585241 PEAK1Q9H792 1746 aa21.72■■□□□ 1.07
SS18-226ENST00000585241 GCP02774 474 aa21.71■■□□□ 1.07
SS18-226ENST00000585241 LMOD2Q6P5Q4 547 aa21.71■■□□□ 1.07
SS18-226ENST00000585241 PNISRQ8TF01 805 aaKnown RBP21.71■■□□□ 1.07
SS18-226ENST00000585241 EMILIN1Q9Y6C2 1016 aa21.71■■□□□ 1.07
SS18-226ENST00000585241 ABCA3Q99758 1704 aa21.71■■□□□ 1.07
SS18-226ENST00000585241 RRS1Q15050 365 aaKnown RBP21.7■■□□□ 1.06
SS18-226ENST00000585241 MAP3K19Q56UN5 1328 aa21.7■■□□□ 1.06
SS18-226ENST00000585241 RTL1A6NKG5 1358 aa21.7■■□□□ 1.06
SS18-226ENST00000585241 CFAP53Q96M91 514 aa21.69■■□□□ 1.06
SS18-226ENST00000585241 SHPRHQ149N8 1683 aa21.69■■□□□ 1.06
SS18-226ENST00000585241 LTN1O94822 1766 aa21.67■■□□□ 1.06
SS18-226ENST00000585241 ABCC6O95255 1503 aa21.67■■□□□ 1.06
SS18-226ENST00000585241 FLT4P35916 1363 aa21.67■■□□□ 1.06
SS18-226ENST00000585241 CPDO75976 1380 aa21.66■■□□□ 1.06
SS18-226ENST00000585241 ARHGEF25Q86VW2 580 aa21.66■■□□□ 1.06
SS18-226ENST00000585241 SOX12O15370 315 aa21.65■■□□□ 1.06
SS18-226ENST00000585241 HOXC9P31274 260 aa21.62■■□□□ 1.05
SS18-226ENST00000585241 CABLES1Q8TDN4 633 aa21.62■■□□□ 1.05
SS18-226ENST00000585241 IP6K1Q92551 441 aa21.61■■□□□ 1.05
SS18-226ENST00000585241 COL18A1P39060 1754 aa21.61■■□□□ 1.05
SS18-226ENST00000585241 PPM1GO15355 546 aaPredicted RBP21.6■■□□□ 1.05
SS18-226ENST00000585241 DIAPH1O60610 1272 aaKnown RBP21.6■■□□□ 1.05
SS18-226ENST00000585241 IL13P35225 146 aa21.6■■□□□ 1.05
SS18-226ENST00000585241 AMPHP49418 695 aa21.6■■□□□ 1.05
SS18-226ENST00000585241 BLMP54132 1417 aaPredicted RBP21.6■■□□□ 1.05
SS18-226ENST00000585241 HSP90AB2PQ58FF8 381 aa21.59■■□□□ 1.05
SS18-226ENST00000585241 JCADQ9P266 1359 aa21.59■■□□□ 1.05
SS18-226ENST00000585241 FAM9BQ8IZU0 186 aa21.58■■□□□ 1.05
SS18-226ENST00000585241 NUDCQ9Y266 331 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms