RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 BRINP3Q76B58 766 aa22■■□□□ 1.11
SS18-211ENST00000578954 CC2D1BQ5T0F9 858 aaKnown RBP21.99■■□□□ 1.11
SS18-211ENST00000578954 TRPM3Q9HCF6 1732 aaPredicted RBP21.99■■□□□ 1.11
SS18-211ENST00000578954 USP54Q70EL1 1684 aa21.98■■□□□ 1.11
SS18-211ENST00000578954 NPHP3Q7Z494 1330 aa21.97■■□□□ 1.11
SS18-211ENST00000578954 USP31Q70CQ4 1352 aa21.97■■□□□ 1.11
SS18-211ENST00000578954 PIK3C2AO00443 1686 aa21.96■■□□□ 1.11
SS18-211ENST00000578954 FOXO3O43524 673 aa21.96■■□□□ 1.11
SS18-211ENST00000578954 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.96■■□□□ 1.11
SS18-211ENST00000578954 OVOS2A0A0J9YW53 1432 aa21.96■■□□□ 1.11
SS18-211ENST00000578954 OVOS2Q6IE36 1432 aa21.96■■□□□ 1.11
SS18-211ENST00000578954 PXDNQ92626 1479 aa21.96■■□□□ 1.11
SS18-211ENST00000578954 NHSL1Q5SYE7 1610 aa21.95■■□□□ 1.1
SS18-211ENST00000578954 CCER2I3L3R5 266 aa21.95■■□□□ 1.1
SS18-211ENST00000578954 MYBBP1AQ9BQG0 1328 aaKnown RBP21.95■■□□□ 1.1
SS18-211ENST00000578954 PSME1Q06323 249 aa21.94■■□□□ 1.1
SS18-211ENST00000578954 NME9Q86XW9 330 aa21.94■■□□□ 1.1
SS18-211ENST00000578954 SBNO1A3KN83 1393 aa21.94■■□□□ 1.1
SS18-211ENST00000578954 CERKQ8TCT0 537 aa21.93■■□□□ 1.1
SS18-211ENST00000578954 GGNBP2Q9H3C7 697 aa21.93■■□□□ 1.1
SS18-211ENST00000578954 SCAF1Q9H7N4 1312 aaKnown RBP21.93■■□□□ 1.1
SS18-211ENST00000578954 KRT28Q7Z3Y7 464 aa21.92■■□□□ 1.1
SS18-211ENST00000578954 ALS2Q96Q42 1657 aa21.91■■□□□ 1.1
SS18-211ENST00000578954 ROBO1Q9Y6N7 1651 aa21.91■■□□□ 1.1
SS18-211ENST00000578954 MORC1Q86VD1 984 aa21.91■■□□□ 1.1
SS18-211ENST00000578954 MARF1Q9Y4F3 1742 aaKnown RBP21.91■■□□□ 1.1
SS18-211ENST00000578954 AHDC1Q5TGY3 1603 aaPredicted RBP21.91■■□□□ 1.1
SS18-211ENST00000578954 SOS2Q07890 1332 aaPredicted RBP21.9■■□□□ 1.1
SS18-211ENST00000578954 TOM1O60784 492 aa21.9■■□□□ 1.1
SS18-211ENST00000578954 CNGB1Q14028 1251 aaPredicted RBP21.89■■□□□ 1.09
SS18-211ENST00000578954 PPP2R1AP30153 589 aa21.88■■□□□ 1.09
SS18-211ENST00000578954 NLRP13Q86W25 1043 aa21.88■■□□□ 1.09
SS18-211ENST00000578954 COG3Q96JB2 828 aa21.88■■□□□ 1.09
SS18-211ENST00000578954 TNS3Q68CZ2 1445 aa21.88■■□□□ 1.09
SS18-211ENST00000578954 AATKQ6ZMQ8 1374 aa21.87■■□□□ 1.09
SS18-211ENST00000578954 ZRANB1Q9UGI0 708 aa21.87■■□□□ 1.09
SS18-211ENST00000578954 XPCQ01831 940 aaPredicted RBP21.86■■□□□ 1.09
SS18-211ENST00000578954 DDX17Q92841 729 aaKnown RBP21.86■■□□□ 1.09
SS18-211ENST00000578954 ABTB2Q8N961 1025 aa21.85■■□□□ 1.09
SS18-211ENST00000578954 SPATA31A3Q5VYP0 1347 aa21.84■■□□□ 1.09
SS18-211ENST00000578954 SMG6Q86US8 1419 aaKnown RBP21.84■■□□□ 1.09
SS18-211ENST00000578954 PAK3O75914 559 aaPredicted RBP21.84■■□□□ 1.09
SS18-211ENST00000578954 SLIT3O75094 1523 aa21.84■■□□□ 1.09
SS18-211ENST00000578954 USP19O94966 1318 aa21.83■■□□□ 1.09
SS18-211ENST00000578954 MED1Q15648 1581 aaPredicted RBP21.83■■□□□ 1.09
SS18-211ENST00000578954 UBAP1LF5GYI3 381 aa21.82■■□□□ 1.08
SS18-211ENST00000578954 NLRP6P59044 892 aa21.82■■□□□ 1.08
SS18-211ENST00000578954 ARHGEF10O15013 1369 aa21.82■■□□□ 1.08
SS18-211ENST00000578954 CCDC184Q52MB2 194 aa21.81■■□□□ 1.08
SS18-211ENST00000578954 CRYBG1Q9Y4K1 1723 aa21.79■■□□□ 1.08
SS18-211ENST00000578954 NFAT5O94916 1531 aa21.79■■□□□ 1.08
SS18-211ENST00000578954 COL16A1Q07092 1604 aaPredicted RBP21.78■■□□□ 1.08
SS18-211ENST00000578954 TNNT2P45379 298 aaPredicted RBP21.78■■□□□ 1.08
SS18-211ENST00000578954 INSRP06213 1382 aa21.77■■□□□ 1.08
SS18-211ENST00000578954 MRS2Q9HD23 443 aa21.77■■□□□ 1.08
SS18-211ENST00000578954 POLKQ9UBT6 870 aa21.77■■□□□ 1.08
SS18-211ENST00000578954 MAP2P11137 1827 aaKnown RBP21.77■■□□□ 1.08
SS18-211ENST00000578954 PNPLA6Q8IY17 1366 aa21.76■■□□□ 1.07
SS18-211ENST00000578954 NUTM2GQ5VZR2 741 aa21.76■■□□□ 1.07
SS18-211ENST00000578954 CDK12Q9NYV4 1490 aaPredicted RBP21.76■■□□□ 1.07
SS18-211ENST00000578954 PHLPP1O60346 1717 aa21.75■■□□□ 1.07
SS18-211ENST00000578954 MTHFSP49914 203 aa21.75■■□□□ 1.07
SS18-211ENST00000578954 KCNH5Q8NCM2 988 aa21.75■■□□□ 1.07
SS18-211ENST00000578954 PHRF1Q9P1Y6 1649 aaKnown RBP21.75■■□□□ 1.07
SS18-211ENST00000578954 COL3A1P02461 1466 aaPredicted RBP21.75■■□□□ 1.07
SS18-211ENST00000578954 KIF24Q5T7B8 1368 aa21.74■■□□□ 1.07
SS18-211ENST00000578954 LRRC59Q96AG4 307 aaKnown RBP21.73■■□□□ 1.07
SS18-211ENST00000578954 COL22A1Q8NFW1 1626 aaPredicted RBP21.73■■□□□ 1.07
SS18-211ENST00000578954 FBLN1P23142 703 aa21.72■■□□□ 1.07
SS18-211ENST00000578954 PIP4K2BP78356 416 aa21.72■■□□□ 1.07
SS18-211ENST00000578954 PEAK1Q9H792 1746 aa21.72■■□□□ 1.07
SS18-211ENST00000578954 GCP02774 474 aa21.71■■□□□ 1.07
SS18-211ENST00000578954 LMOD2Q6P5Q4 547 aa21.71■■□□□ 1.07
SS18-211ENST00000578954 PNISRQ8TF01 805 aaKnown RBP21.71■■□□□ 1.07
SS18-211ENST00000578954 EMILIN1Q9Y6C2 1016 aa21.71■■□□□ 1.07
SS18-211ENST00000578954 ABCA3Q99758 1704 aa21.71■■□□□ 1.07
SS18-211ENST00000578954 RRS1Q15050 365 aaKnown RBP21.7■■□□□ 1.06
SS18-211ENST00000578954 MAP3K19Q56UN5 1328 aa21.7■■□□□ 1.06
SS18-211ENST00000578954 RTL1A6NKG5 1358 aa21.7■■□□□ 1.06
SS18-211ENST00000578954 CFAP53Q96M91 514 aa21.69■■□□□ 1.06
SS18-211ENST00000578954 SHPRHQ149N8 1683 aa21.69■■□□□ 1.06
SS18-211ENST00000578954 LTN1O94822 1766 aa21.67■■□□□ 1.06
SS18-211ENST00000578954 ABCC6O95255 1503 aa21.67■■□□□ 1.06
SS18-211ENST00000578954 FLT4P35916 1363 aa21.67■■□□□ 1.06
SS18-211ENST00000578954 CPDO75976 1380 aa21.66■■□□□ 1.06
SS18-211ENST00000578954 ARHGEF25Q86VW2 580 aa21.66■■□□□ 1.06
SS18-211ENST00000578954 SOX12O15370 315 aa21.65■■□□□ 1.06
SS18-211ENST00000578954 HOXC9P31274 260 aa21.62■■□□□ 1.05
SS18-211ENST00000578954 CABLES1Q8TDN4 633 aa21.62■■□□□ 1.05
SS18-211ENST00000578954 IP6K1Q92551 441 aa21.61■■□□□ 1.05
SS18-211ENST00000578954 COL18A1P39060 1754 aa21.61■■□□□ 1.05
SS18-211ENST00000578954 PPM1GO15355 546 aaPredicted RBP21.6■■□□□ 1.05
SS18-211ENST00000578954 DIAPH1O60610 1272 aaKnown RBP21.6■■□□□ 1.05
SS18-211ENST00000578954 IL13P35225 146 aa21.6■■□□□ 1.05
SS18-211ENST00000578954 AMPHP49418 695 aa21.6■■□□□ 1.05
SS18-211ENST00000578954 BLMP54132 1417 aaPredicted RBP21.6■■□□□ 1.05
SS18-211ENST00000578954 HSP90AB2PQ58FF8 381 aa21.59■■□□□ 1.05
SS18-211ENST00000578954 JCADQ9P266 1359 aa21.59■■□□□ 1.05
SS18-211ENST00000578954 FAM9BQ8IZU0 186 aa21.58■■□□□ 1.05
SS18-211ENST00000578954 NUDCQ9Y266 331 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms