RNA–Protein interactions for RNA: ENST00000578525.5

CDK5RAP3-208, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 564 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-208	ENST00000578525	UBR1	Q8IWV7	1749 aa		12.08	□□□□□ -0.47
CDK5RAP3-208	ENST00000578525	U2SURP	O15042	1029 aa	Known RBP	12.08	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	WAPL	Q7Z5K2	1190 aa		12.08	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	PLEKHF1	Q96S99	279 aa		12.08	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	PNN	Q9H307	717 aa	Known RBP	12.08	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	EDC4	Q6P2E9	1401 aa	Known RBP	12.08	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	MAPK8IP3	Q9UPT6	1336 aa		12.08	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	MET	P08581	1390 aa		12.07	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	DIAPH1	O60610	1272 aa	Known RBP	12.07	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	CT47B1	P0C2W7	299 aa	Predicted RBP	12.07	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	CPSF1	Q10570	1443 aa	Known RBP	12.07	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	AAMP	Q13685	434 aa		12.07	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	MON2	Q7Z3U7	1717 aa		12.07	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	IL16	Q14005	1332 aa		12.07	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	WASL	O00401	505 aa	Predicted RBP	12.06	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	TMPO	P42166	694 aa	Known RBP	12.06	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.06	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	AKAP12	Q02952	1782 aa		12.05	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	PPIP5K1	Q6PFW1	1433 aa		12.05	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	PAK3	O75914	559 aa	Predicted RBP	12.05	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	SKAP1	Q86WV1	359 aa		12.05	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	PANK1	Q8TE04	598 aa		12.05	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	CLUAP1	Q96AJ1	413 aa		12.05	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	ITSN1	Q15811	1721 aa		12.05	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	LRRC7	Q96NW7	1537 aa		12.05	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	TMEM2	Q9UHN6	1383 aa		12.05	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	NPM2	Q86SE8	214 aa	Known RBP	12.04	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	FRAT1	Q92837	279 aa	Predicted RBP	12.04	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	COG6	Q9Y2V7	657 aa		12.04	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	CDK12	Q9NYV4	1490 aa	Predicted RBP	12.03	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	FAM161A	Q3B820	660 aa		12.03	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	TRIM35	Q9UPQ4	493 aa		12.03	□□□□□ -0.48
CDK5RAP3-208	ENST00000578525	FCHSD2	O94868	740 aa		12.02	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	PMFBP1	Q8TBY8	1022 aa		12.02	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	DDRGK1	Q96HY6	314 aa		12.02	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	POLK	Q9UBT6	870 aa		12.02	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	C3	P01024	1663 aa		12.02	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	AATK	Q6ZMQ8	1374 aa		12.02	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	PLEKHG1	Q9ULL1	1385 aa		12.02	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	ADAMTS13	Q76LX8	1427 aa		12.02	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	TOPAZ1	Q8N9V7	1692 aa		12.01	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	IGHD	P01880	384 aa		12.01	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	TXNDC2	Q86VQ3	553 aa		12.01	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	NUDT16	Q96DE0	195 aa	Known RBP	12.01	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	RIPK4	P57078	832 aa		12	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	EXOSC9	Q06265	439 aa	Known RBP	12	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	ZKSCAN2	Q63HK3	967 aa		12	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	RSPH6A	Q9H0K4	717 aa		12	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	MAP2	P11137	1827 aa	Known RBP	12	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	VIRMA	Q69YN4	1812 aa	Known RBP	12	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	NEFM	P07197	916 aa		11.99	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	RGS3	P49796	1198 aa		11.99	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	C8orf34	Q49A92	452 aa		11.99	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	NME9	Q86XW9	330 aa		11.99	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	TSR2	Q969E8	191 aa	Known RBP	11.99	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	BCL2L13	Q9BXK5	485 aa		11.99	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	TNN	Q9UQP3	1299 aa		11.99	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	CCDC61	Q9Y6R9	512 aa		11.99	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	NRK	Q7Z2Y5	1582 aa		11.99	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	11.98	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	ROBO2	Q9HCK4	1378 aa		11.98	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	RLBP1	P12271	317 aa		11.98	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	PRKAR2B	P31323	418 aa		11.98	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	MVP	Q14764	893 aa	Known RBP	11.98	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	SMC4	Q9NTJ3	1288 aa		11.98	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	PRR36	Q9H6K5	1346 aa		11.97	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	NFE2L2	Q16236	605 aa		11.97	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	DZIP1L	Q8IYY4	767 aa	Known RBP	11.97	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	COG3	Q96JB2	828 aa		11.97	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	ZNF692	Q9BU19	519 aa	Predicted RBP	11.97	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	SLIT1	O75093	1534 aa		11.96	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	ARHGAP23	Q9P227	1491 aa		11.96	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	IL13	P35225	146 aa		11.96	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	CALD1	Q05682	793 aa	Known RBP	11.96	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	EMILIN1	Q9Y6C2	1016 aa		11.96	□□□□□ -0.49
CDK5RAP3-208	ENST00000578525	KIF16B	Q96L93	1317 aa		11.95	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	PPM1G	O15355	546 aa	Predicted RBP	11.95	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	ALDH1L2	Q3SY69	923 aa		11.95	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	FTSJ3	Q8IY81	847 aa	Known RBP	11.95	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	SSH1	Q8WYL5	1049 aa		11.95	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	RWDD1	Q9H446	243 aa	Predicted RBP	11.95	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	ZRANB1	Q9UGI0	708 aa		11.95	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	PCDHB15	Q9Y5E8	787 aa		11.95	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	DIP2A	Q14689	1571 aa		11.95	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	FBLN1	P23142	703 aa		11.94	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	FER1L4	A9Z1Z3	1794 aa		11.94	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	PTPRU	Q92729	1446 aa		11.94	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	NCKAP5L	Q9HCH0	1330 aa		11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	PLEKHG3	A1L390	1219 aa		11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	IPO8	O15397	1037 aa	Known RBP	11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	LTK	P29376	864 aa		11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	LMOD3	Q0VAK6	560 aa		11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	ATF7IP	Q6VMQ6	1270 aa		11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	ZNF428	Q96B54	188 aa		11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	DDX19B	Q9UMR2	479 aa		11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	EID1	Q9Y6B2	187 aa		11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	NALCN	Q8IZF0	1738 aa		11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	OVOS2	A0A0J9YW53	1432 aa		11.93	□□□□□ -0.5
CDK5RAP3-208	ENST00000578525	OVOS2	Q6IE36	1432 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms