RNA–Protein interactions for RNA: ENST00000571043.5

RPAIN-208, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,547 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-208ENST00000571043 ACEP12821 1306 aa23.16■■□□□ 1.3
RPAIN-208ENST00000571043 CPSF1Q10570 1443 aaKnown RBP23.16■■□□□ 1.3
RPAIN-208ENST00000571043 POLR3AO14802 1390 aaPredicted RBP23.16■■□□□ 1.3
RPAIN-208ENST00000571043 SMG6Q86US8 1419 aaKnown RBP23.15■■□□□ 1.3
RPAIN-208ENST00000571043 BLMP54132 1417 aaPredicted RBP23.14■■□□□ 1.3
RPAIN-208ENST00000571043 TOM1O60784 492 aa23.14■■□□□ 1.3
RPAIN-208ENST00000571043 FKBP8Q14318 412 aa23.14■■□□□ 1.3
RPAIN-208ENST00000571043 HDGFL2Q7Z4V5 671 aaPredicted RBP23.14■■□□□ 1.3
RPAIN-208ENST00000571043 A0A1W2PP64 1363 aa23.14■■□□□ 1.3
RPAIN-208ENST00000571043 NGDNQ8NEJ9 315 aaKnown RBP23.13■■□□□ 1.29
RPAIN-208ENST00000571043 AKAP12Q02952 1782 aa23.13■■□□□ 1.29
RPAIN-208ENST00000571043 BRINP3Q76B58 766 aa23.13■■□□□ 1.29
RPAIN-208ENST00000571043 KIF1AQ12756 1690 aa23.11■■□□□ 1.29
RPAIN-208ENST00000571043 CGNL1Q0VF96 1302 aa23.11■■□□□ 1.29
RPAIN-208ENST00000571043 NSD2O96028 1365 aa23.11■■□□□ 1.29
RPAIN-208ENST00000571043 NUDCQ9Y266 331 aa23.11■■□□□ 1.29
RPAIN-208ENST00000571043 FOXO3O43524 673 aa23.1■■□□□ 1.29
RPAIN-208ENST00000571043 MON2Q7Z3U7 1717 aa23.09■■□□□ 1.29
RPAIN-208ENST00000571043 PSME1Q06323 249 aa23.08■■□□□ 1.28
RPAIN-208ENST00000571043 PDE3BQ13370 1112 aa23.08■■□□□ 1.28
RPAIN-208ENST00000571043 WDR43Q15061 677 aaKnown RBP eCLIP23.08■■□□□ 1.28
RPAIN-208ENST00000571043 MORC1Q86VD1 984 aa23.08■■□□□ 1.28
RPAIN-208ENST00000571043 USP6P35125 1406 aa23.07■■□□□ 1.28
RPAIN-208ENST00000571043 UBAP1LF5GYI3 381 aa23.07■■□□□ 1.28
RPAIN-208ENST00000571043 ADAMTS8Q9UP79 889 aa23.06■■□□□ 1.28
RPAIN-208ENST00000571043 SSH2Q76I76 1423 aa23.06■■□□□ 1.28
RPAIN-208ENST00000571043 EDC4Q6P2E9 1401 aaKnown RBP23.05■■□□□ 1.28
RPAIN-208ENST00000571043 NPHP3Q7Z494 1330 aa23.04■■□□□ 1.28
RPAIN-208ENST00000571043 ERICH6BQ5W0A0 696 aa23.03■■□□□ 1.28
RPAIN-208ENST00000571043 KRT28Q7Z3Y7 464 aa23.03■■□□□ 1.28
RPAIN-208ENST00000571043 ROBO1Q9Y6N7 1651 aa23.03■■□□□ 1.28
RPAIN-208ENST00000571043 TTC21BQ7Z4L5 1316 aa23.03■■□□□ 1.28
RPAIN-208ENST00000571043 DDX17Q92841 729 aaKnown RBP23.03■■□□□ 1.28
RPAIN-208ENST00000571043 PIP4K2BP78356 416 aa23■■□□□ 1.27
RPAIN-208ENST00000571043 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23■■□□□ 1.27
RPAIN-208ENST00000571043 NRKQ7Z2Y5 1582 aa23■■□□□ 1.27
RPAIN-208ENST00000571043 SOS2Q07890 1332 aaPredicted RBP22.99■■□□□ 1.27
RPAIN-208ENST00000571043 TTC21AQ8NDW8 1320 aa22.99■■□□□ 1.27
RPAIN-208ENST00000571043 NHSL1Q5SYE7 1610 aa22.99■■□□□ 1.27
RPAIN-208ENST00000571043 FYB1O15117 783 aa22.99■■□□□ 1.27
RPAIN-208ENST00000571043 XPCQ01831 940 aaPredicted RBP22.99■■□□□ 1.27
RPAIN-208ENST00000571043 PXDNQ92626 1479 aa22.97■■□□□ 1.27
RPAIN-208ENST00000571043 TRPM3Q9HCF6 1732 aaPredicted RBP22.97■■□□□ 1.27
RPAIN-208ENST00000571043 PAK3O75914 559 aaPredicted RBP22.96■■□□□ 1.27
RPAIN-208ENST00000571043 SBNO1A3KN83 1393 aa22.96■■□□□ 1.27
RPAIN-208ENST00000571043 PELP1Q8IZL8 1130 aaKnown RBP22.95■■□□□ 1.26
RPAIN-208ENST00000571043 AHDC1Q5TGY3 1603 aaPredicted RBP22.95■■□□□ 1.26
RPAIN-208ENST00000571043 RNF123Q5XPI4 1314 aa22.94■■□□□ 1.26
RPAIN-208ENST00000571043 SENP3-EIF4A1A0A087X0R7 540 aa22.94■■□□□ 1.26
RPAIN-208ENST00000571043 NME9Q86XW9 330 aa22.94■■□□□ 1.26
RPAIN-208ENST00000571043 KIF20BQ96Q89 1820 aa22.94■■□□□ 1.26
RPAIN-208ENST00000571043 ABTB2Q8N961 1025 aa22.93■■□□□ 1.26
RPAIN-208ENST00000571043 GGNBP2Q9H3C7 697 aa22.92■■□□□ 1.26
RPAIN-208ENST00000571043 SPATA31A3Q5VYP0 1347 aa22.92■■□□□ 1.26
RPAIN-208ENST00000571043 USP31Q70CQ4 1352 aa22.92■■□□□ 1.26
RPAIN-208ENST00000571043 NGEFQ8N5V2 710 aa22.92■■□□□ 1.26
RPAIN-208ENST00000571043 CFAP53Q96M91 514 aa22.92■■□□□ 1.26
RPAIN-208ENST00000571043 SALL2Q9Y467 1007 aaPredicted RBP22.92■■□□□ 1.26
RPAIN-208ENST00000571043 ZRANB1Q9UGI0 708 aa22.91■■□□□ 1.26
RPAIN-208ENST00000571043 PIK3C2AO00443 1686 aa22.9■■□□□ 1.26
RPAIN-208ENST00000571043 ALS2Q96Q42 1657 aa22.9■■□□□ 1.26
RPAIN-208ENST00000571043 ANKRD26Q9UPS8 1709 aa22.9■■□□□ 1.26
RPAIN-208ENST00000571043 TNNT2P45379 298 aaPredicted RBP22.89■■□□□ 1.26
RPAIN-208ENST00000571043 MTHFSP49914 203 aa22.89■■□□□ 1.26
RPAIN-208ENST00000571043 NLRP6P59044 892 aa22.89■■□□□ 1.26
RPAIN-208ENST00000571043 TNS3Q68CZ2 1445 aa22.88■■□□□ 1.25
RPAIN-208ENST00000571043 LRRC59Q96AG4 307 aaKnown RBP22.88■■□□□ 1.25
RPAIN-208ENST00000571043 COG3Q96JB2 828 aa22.88■■□□□ 1.25
RPAIN-208ENST00000571043 PHLPP1O60346 1717 aa22.88■■□□□ 1.25
RPAIN-208ENST00000571043 ZNF521Q96K83 1311 aa22.87■■□□□ 1.25
RPAIN-208ENST00000571043 OVOS2A0A0J9YW53 1432 aa22.86■■□□□ 1.25
RPAIN-208ENST00000571043 OVOS2Q6IE36 1432 aa22.86■■□□□ 1.25
RPAIN-208ENST00000571043 USP54Q70EL1 1684 aa22.86■■□□□ 1.25
RPAIN-208ENST00000571043 NUTM2GQ5VZR2 741 aa22.86■■□□□ 1.25
RPAIN-208ENST00000571043 LMOD2Q6P5Q4 547 aa22.86■■□□□ 1.25
RPAIN-208ENST00000571043 ARHGEF10O15013 1369 aa22.85■■□□□ 1.25
RPAIN-208ENST00000571043 MARF1Q9Y4F3 1742 aaKnown RBP22.85■■□□□ 1.25
RPAIN-208ENST00000571043 COL16A1Q07092 1604 aaPredicted RBP22.84■■□□□ 1.25
RPAIN-208ENST00000571043 IRX6P78412 446 aaPredicted RBP22.84■■□□□ 1.25
RPAIN-208ENST00000571043 CDCA7LQ96GN5 454 aa22.83■■□□□ 1.25
RPAIN-208ENST00000571043 CCDC146Q8IYE0 955 aa22.82■■□□□ 1.24
RPAIN-208ENST00000571043 PPP4R2Q9NY27 417 aa22.82■■□□□ 1.24
RPAIN-208ENST00000571043 RCAN3Q9UKA8 241 aa22.82■■□□□ 1.24
RPAIN-208ENST00000571043 USP19O94966 1318 aa22.81■■□□□ 1.24
RPAIN-208ENST00000571043 APAF1O14727 1248 aa22.81■■□□□ 1.24
RPAIN-208ENST00000571043 MAP2P11137 1827 aaKnown RBP22.8■■□□□ 1.24
RPAIN-208ENST00000571043 GOLGA2Q08379 1002 aa22.8■■□□□ 1.24
RPAIN-208ENST00000571043 RUNDC1Q96C34 613 aa22.79■■□□□ 1.24
RPAIN-208ENST00000571043 SHPRHQ149N8 1683 aa22.78■■□□□ 1.24
RPAIN-208ENST00000571043 NCBP3Q53F19 620 aaKnown RBP22.78■■□□□ 1.24
RPAIN-208ENST00000571043 KCNH5Q8NCM2 988 aa22.78■■□□□ 1.24
RPAIN-208ENST00000571043 AATKQ6ZMQ8 1374 aa22.78■■□□□ 1.24
RPAIN-208ENST00000571043 GCP02774 474 aa22.77■■□□□ 1.24
RPAIN-208ENST00000571043 MED1Q15648 1581 aaPredicted RBP22.77■■□□□ 1.24
RPAIN-208ENST00000571043 SLIT3O75094 1523 aa22.77■■□□□ 1.24
RPAIN-208ENST00000571043 FBLN1P23142 703 aa22.77■■□□□ 1.24
RPAIN-208ENST00000571043 HSPA1LP34931 641 aa22.77■■□□□ 1.24
RPAIN-208ENST00000571043 PNPLA6Q8IY17 1366 aa22.75■■□□□ 1.23
RPAIN-208ENST00000571043 CABLES1Q8TDN4 633 aa22.75■■□□□ 1.23
RPAIN-208ENST00000571043 CRYBG1Q9Y4K1 1723 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms