RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 PRPF38BQ5VTL8 546 aaKnown RBP9.51□□□□□ -0.89
VPS39-209ENST00000568029 CFAP43Q8NDM7 1665 aa9.51□□□□□ -0.89
VPS39-209ENST00000568029 WDR7Q9Y4E6 1490 aa9.5□□□□□ -0.89
VPS39-209ENST00000568029 SIGLEC1Q9BZZ2 1709 aa9.49□□□□□ -0.89
VPS39-209ENST00000568029 HSPA2P54652 639 aa9.49□□□□□ -0.89
VPS39-209ENST00000568029 FRMPD1Q5SYB0 1578 aa9.49□□□□□ -0.89
VPS39-209ENST00000568029 MAGI3Q5TCQ9 1506 aa9.48□□□□□ -0.89
VPS39-209ENST00000568029 ACTN4O43707 911 aaKnown RBP9.48□□□□□ -0.89
VPS39-209ENST00000568029 LILRB3O75022 631 aa9.48□□□□□ -0.89
VPS39-209ENST00000568029 ATP6V1AP38606 617 aa9.48□□□□□ -0.89
VPS39-209ENST00000568029 BANK1Q8NDB2 785 aa9.48□□□□□ -0.89
VPS39-209ENST00000568029 KIAA0556O60303 1618 aa9.47□□□□□ -0.89
VPS39-209ENST00000568029 FDX1P10109 184 aa9.47□□□□□ -0.89
VPS39-209ENST00000568029 NDUFV2P19404 249 aa9.47□□□□□ -0.89
VPS39-209ENST00000568029 TMEM259Q4ZIN3 620 aa9.47□□□□□ -0.89
VPS39-209ENST00000568029 WNT2BQ93097 391 aa9.47□□□□□ -0.89
VPS39-209ENST00000568029 TSR3Q9UJK0 312 aaKnown RBP9.47□□□□□ -0.89
VPS39-209ENST00000568029 IGF1RP08069 1367 aa9.47□□□□□ -0.89
VPS39-209ENST00000568029 RNF40O75150 1001 aa9.46□□□□□ -0.9
VPS39-209ENST00000568029 RFC5P40937 340 aa9.46□□□□□ -0.9
VPS39-209ENST00000568029 FUT2Q10981 343 aa9.46□□□□□ -0.9
VPS39-209ENST00000568029 ZBTB3Q9H5J0 574 aa9.46□□□□□ -0.9
VPS39-209ENST00000568029 CARMIL2Q6F5E8 1435 aa9.46□□□□□ -0.9
VPS39-209ENST00000568029 PPP4CP60510 307 aa9.45□□□□□ -0.9
VPS39-209ENST00000568029 ATP1B4Q9UN42 357 aaPredicted RBP9.45□□□□□ -0.9
VPS39-209ENST00000568029 CD109Q6YHK3 1445 aa9.45□□□□□ -0.9
VPS39-209ENST00000568029 SPDYE5A6NIY4 337 aa9.44□□□□□ -0.9
VPS39-209ENST00000568029 PCDHGC3Q9UN70 934 aa9.44□□□□□ -0.9
VPS39-209ENST00000568029 HPS5Q9UPZ3 1129 aa9.44□□□□□ -0.9
VPS39-209ENST00000568029 PCDHB15Q9Y5E8 787 aa9.44□□□□□ -0.9
VPS39-209ENST00000568029 MCM6Q14566 821 aa9.43□□□□□ -0.9
VPS39-209ENST00000568029 QPCTQ16769 361 aa9.43□□□□□ -0.9
VPS39-209ENST00000568029 NYAP1Q6ZVC0 841 aa9.43□□□□□ -0.9
VPS39-209ENST00000568029 HRCP23327 699 aa9.42□□□□□ -0.9
VPS39-209ENST00000568029 BCAMP50895 628 aa9.42□□□□□ -0.9
VPS39-209ENST00000568029 MORN1Q5T089 497 aa9.42□□□□□ -0.9
VPS39-209ENST00000568029 ARAP3Q8WWN8 1544 aa9.41□□□□□ -0.9
VPS39-209ENST00000568029 FBXO31Q5XUX0 539 aaPredicted RBP9.41□□□□□ -0.9
VPS39-209ENST00000568029 THSD4Q6ZMP0 1018 aa9.41□□□□□ -0.9
VPS39-209ENST00000568029 RNF166Q96A37 237 aaPredicted RBP9.41□□□□□ -0.9
VPS39-209ENST00000568029 SALL2Q9Y467 1007 aaPredicted RBP9.41□□□□□ -0.9
VPS39-209ENST00000568029 UGGT2Q9NYU1 1516 aa9.41□□□□□ -0.9
VPS39-209ENST00000568029 MTMR2Q13614 643 aa9.4□□□□□ -0.9
VPS39-209ENST00000568029 CSPP1Q1MSJ5 1256 aa9.4□□□□□ -0.9
VPS39-209ENST00000568029 Q3C1V9 767 aa9.4□□□□□ -0.9
VPS39-209ENST00000568029 ZMYND15Q9H091 742 aa9.4□□□□□ -0.9
VPS39-209ENST00000568029 ABCA8O94911 1581 aa9.4□□□□□ -0.9
VPS39-209ENST00000568029 ARHGEF40Q8TER5 1519 aa9.4□□□□□ -0.91
VPS39-209ENST00000568029 NUTM2BA6NNL0 878 aaPredicted RBP9.39□□□□□ -0.91
VPS39-209ENST00000568029 NUTM2EB1AL46 878 aaPredicted RBP9.39□□□□□ -0.91
VPS39-209ENST00000568029 APLP1P51693 650 aa9.39□□□□□ -0.91
VPS39-209ENST00000568029 RTL5Q5HYW3 569 aaPredicted RBP9.39□□□□□ -0.91
VPS39-209ENST00000568029 NUTM2DQ5VT03 806 aaPredicted RBP9.39□□□□□ -0.91
VPS39-209ENST00000568029 NUTM2AQ8IVF1 878 aaPredicted RBP9.39□□□□□ -0.91
VPS39-209ENST00000568029 HLA-CQ95604 372 aa9.39□□□□□ -0.91
VPS39-209ENST00000568029 MYT1LQ9UL68 1186 aa9.39□□□□□ -0.91
VPS39-209ENST00000568029 STRCQ7RTU9 1775 aa9.39□□□□□ -0.91
VPS39-209ENST00000568029 RAPGEF3O95398 923 aa9.38□□□□□ -0.91
VPS39-209ENST00000568029 GUCA2AQ02747 115 aa9.38□□□□□ -0.91
VPS39-209ENST00000568029 CABLES1Q8TDN4 633 aa9.38□□□□□ -0.91
VPS39-209ENST00000568029 KIF27Q86VH2 1401 aa9.38□□□□□ -0.91
VPS39-209ENST00000568029 CARMIL1Q5VZK9 1371 aa9.37□□□□□ -0.91
VPS39-209ENST00000568029 A6NJR5 290 aa9.37□□□□□ -0.91
VPS39-209ENST00000568029 APBB1O00213 710 aa9.37□□□□□ -0.91
VPS39-209ENST00000568029 WBP1LQ9NX94 342 aa9.37□□□□□ -0.91
VPS39-209ENST00000568029 ABCA9Q8IUA7 1624 aa9.36□□□□□ -0.91
VPS39-209ENST00000568029 NR1I2O75469 434 aa9.36□□□□□ -0.91
VPS39-209ENST00000568029 RETREG3Q86VR2 466 aa9.36□□□□□ -0.91
VPS39-209ENST00000568029 SLC27A5Q9Y2P5 690 aa9.36□□□□□ -0.91
VPS39-209ENST00000568029 PCDHB3Q9Y5E6 796 aa9.36□□□□□ -0.91
VPS39-209ENST00000568029 FER1L4A9Z1Z3 1794 aa9.36□□□□□ -0.91
VPS39-209ENST00000568029 LOC105371045A0A1W2PR82 267 aa9.35□□□□□ -0.91
VPS39-209ENST00000568029 ARID3CA6NKF2 412 aa9.35□□□□□ -0.91
VPS39-209ENST00000568029 C6orf229H3BNL8 230 aa9.35□□□□□ -0.91
VPS39-209ENST00000568029 DESI1Q6ICB0 168 aa9.35□□□□□ -0.91
VPS39-209ENST00000568029 RICTORQ6R327 1708 aa9.35□□□□□ -0.91
VPS39-209ENST00000568029 HELBQ8NG08 1087 aaPredicted RBP9.35□□□□□ -0.91
VPS39-209ENST00000568029 UBTFP17480 764 aaKnown RBP9.34□□□□□ -0.91
VPS39-209ENST00000568029 PUS10Q3MIT2 529 aaKnown RBP9.34□□□□□ -0.91
VPS39-209ENST00000568029 KCTD12Q96CX2 325 aaKnown RBP9.34□□□□□ -0.91
VPS39-209ENST00000568029 ARID4BQ4LE39 1312 aaPredicted RBP9.33□□□□□ -0.92
VPS39-209ENST00000568029 TTC37Q6PGP7 1564 aa9.33□□□□□ -0.92
VPS39-209ENST00000568029 PREX1Q8TCU6 1659 aa9.33□□□□□ -0.92
VPS39-209ENST00000568029 CTTNBP2Q8WZ74 1663 aa9.33□□□□□ -0.92
VPS39-209ENST00000568029 AP1G2O75843 785 aa9.33□□□□□ -0.92
VPS39-209ENST00000568029 BRICD5Q6PL45 260 aa9.33□□□□□ -0.92
VPS39-209ENST00000568029 SCUBE3Q8IX30 993 aa9.33□□□□□ -0.92
VPS39-209ENST00000568029 CFAP99D6REC4 459 aa9.32□□□□□ -0.92
VPS39-209ENST00000568029 USP17L8P0C7I0 530 aa9.32□□□□□ -0.92
VPS39-209ENST00000568029 MTMR14Q8NCE2 650 aa9.32□□□□□ -0.92
VPS39-209ENST00000568029 THAP11Q96EK4 314 aa9.32□□□□□ -0.92
VPS39-209ENST00000568029 SNRKQ9NRH2 765 aa9.32□□□□□ -0.92
VPS39-209ENST00000568029 FMNL1O95466 1100 aaPredicted RBP9.31□□□□□ -0.92
VPS39-209ENST00000568029 PRR7Q8TB68 274 aa9.31□□□□□ -0.92
VPS39-209ENST00000568029 LTBP4Q8N2S1 1624 aa9.31□□□□□ -0.92
VPS39-209ENST00000568029 RAD21O60216 631 aa9.3□□□□□ -0.92
VPS39-209ENST00000568029 BLOC1S3Q6QNY0 202 aa9.3□□□□□ -0.92
VPS39-209ENST00000568029 USB1Q9BQ65 265 aaKnown RBP9.3□□□□□ -0.92
VPS39-209ENST00000568029 PRM3Q9NNZ6 103 aa9.3□□□□□ -0.92
VPS39-209ENST00000568029 YEATS2Q9ULM3 1422 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms