RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 COL22A1Q8NFW1 1626 aaPredicted RBP12.19□□□□□ -0.46
VPS39-207ENST00000563692 TULP4Q9NRJ4 1543 aa12.18□□□□□ -0.46
VPS39-207ENST00000563692 PLEKHG5O94827 1062 aa12.18□□□□□ -0.46
VPS39-207ENST00000563692 NUDT16Q96DE0 195 aaKnown RBP12.17□□□□□ -0.46
VPS39-207ENST00000563692 CDK19Q9BWU1 502 aa12.17□□□□□ -0.46
VPS39-207ENST00000563692 PRR36Q9H6K5 1346 aa12.16□□□□□ -0.46
VPS39-207ENST00000563692 CENPJQ9HC77 1338 aaPredicted RBP12.16□□□□□ -0.46
VPS39-207ENST00000563692 PAK3O75914 559 aaPredicted RBP12.16□□□□□ -0.46
VPS39-207ENST00000563692 KTN1Q86UP2 1357 aaKnown RBP12.16□□□□□ -0.46
VPS39-207ENST00000563692 SRPK2P78362 688 aaKnown RBP12.15□□□□□ -0.46
VPS39-207ENST00000563692 CCDC61Q9Y6R9 512 aa12.15□□□□□ -0.46
VPS39-207ENST00000563692 RALBP1Q15311 655 aa12.14□□□□□ -0.47
VPS39-207ENST00000563692 CABLES1Q8TDN4 633 aa12.14□□□□□ -0.47
VPS39-207ENST00000563692 ARHGEF28Q8N1W1 1705 aaKnown RBP12.14□□□□□ -0.47
VPS39-207ENST00000563692 UNC5CLQ8IV45 518 aa12.13□□□□□ -0.47
VPS39-207ENST00000563692 PUS7Q96PZ0 661 aaKnown RBP12.13□□□□□ -0.47
VPS39-207ENST00000563692 PANK3Q9H999 370 aa12.13□□□□□ -0.47
VPS39-207ENST00000563692 SBNO2Q9Y2G9 1366 aa12.13□□□□□ -0.47
VPS39-207ENST00000563692 RGPD8O14715 1765 aaPredicted RBP12.13□□□□□ -0.47
VPS39-207ENST00000563692 RGS12O14924 1447 aa12.12□□□□□ -0.47
VPS39-207ENST00000563692 ATRNO75882 1429 aa12.12□□□□□ -0.47
VPS39-207ENST00000563692 USP32Q8NFA0 1604 aa12.12□□□□□ -0.47
VPS39-207ENST00000563692 GJD4Q96KN9 370 aaPredicted RBP12.12□□□□□ -0.47
VPS39-207ENST00000563692 ATP7BP35670 1465 aa12.12□□□□□ -0.47
VPS39-207ENST00000563692 BCL9LQ86UU0 1499 aa12.11□□□□□ -0.47
VPS39-207ENST00000563692 UPF1Q92900 1129 aaKnown RBP eCLIP12.11□□□□□ -0.47
VPS39-207ENST00000563692 CCDC9Q9Y3X0 531 aaKnown RBP12.11□□□□□ -0.47
VPS39-207ENST00000563692 KNSTRNQ9Y448 316 aa12.11□□□□□ -0.47
VPS39-207ENST00000563692 EVC2Q86UK5 1308 aa12.11□□□□□ -0.47
VPS39-207ENST00000563692 ATAD2Q6PL18 1390 aa12.1□□□□□ -0.47
VPS39-207ENST00000563692 PER1O15534 1290 aaPredicted RBP12.1□□□□□ -0.47
VPS39-207ENST00000563692 MRS2Q9HD23 443 aa12.1□□□□□ -0.47
VPS39-207ENST00000563692 ACEP12821 1306 aa12.1□□□□□ -0.47
VPS39-207ENST00000563692 PLEKHG3A1L390 1219 aa12.09□□□□□ -0.47
VPS39-207ENST00000563692 CABP2Q9NPB3 220 aa12.09□□□□□ -0.47
VPS39-207ENST00000563692 SLIT2O94813 1529 aa12.09□□□□□ -0.47
VPS39-207ENST00000563692 ITSN1Q15811 1721 aa12.08□□□□□ -0.47
VPS39-207ENST00000563692 POLR3AO14802 1390 aaPredicted RBP12.08□□□□□ -0.48
VPS39-207ENST00000563692 CNGB1Q14028 1251 aaPredicted RBP12.08□□□□□ -0.48
VPS39-207ENST00000563692 PRDM11Q9NQV5 511 aa12.08□□□□□ -0.48
VPS39-207ENST00000563692 FAM83GA6ND36 823 aa12.07□□□□□ -0.48
VPS39-207ENST00000563692 VPS72Q15906 364 aa12.07□□□□□ -0.48
VPS39-207ENST00000563692 PPIP5K1Q6PFW1 1433 aa12.07□□□□□ -0.48
VPS39-207ENST00000563692 ABTB2Q8N961 1025 aa12.07□□□□□ -0.48
VPS39-207ENST00000563692 TMC1Q8TDI8 760 aa12.07□□□□□ -0.48
VPS39-207ENST00000563692 MARF1Q9Y4F3 1742 aaKnown RBP12.07□□□□□ -0.48
VPS39-207ENST00000563692 MYBBP1AQ9BQG0 1328 aaKnown RBP12.07□□□□□ -0.48
VPS39-207ENST00000563692 A0A0G2JS52 829 aa12.06□□□□□ -0.48
VPS39-207ENST00000563692 MYT1Q01538 1121 aa12.06□□□□□ -0.48
VPS39-207ENST00000563692 NUTM2GQ5VZR2 741 aa12.06□□□□□ -0.48
VPS39-207ENST00000563692 BTG4Q9NY30 223 aa12.06□□□□□ -0.48
VPS39-207ENST00000563692 TRPM3Q9HCF6 1732 aaPredicted RBP12.06□□□□□ -0.48
VPS39-207ENST00000563692 BRD4O60885 1362 aaPredicted RBP12.05□□□□□ -0.48
VPS39-207ENST00000563692 NLRP13Q86W25 1043 aa12.04□□□□□ -0.48
VPS39-207ENST00000563692 CABP1Q9NZU7 370 aa12.04□□□□□ -0.48
VPS39-207ENST00000563692 ALS2Q96Q42 1657 aa12.03□□□□□ -0.48
VPS39-207ENST00000563692 QRICH2Q9H0J4 1663 aa12.03□□□□□ -0.48
VPS39-207ENST00000563692 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.03□□□□□ -0.48
VPS39-207ENST00000563692 ZC3H6P61129 1189 aaKnown RBP12.03□□□□□ -0.48
VPS39-207ENST00000563692 CC2D1BQ5T0F9 858 aaKnown RBP12.03□□□□□ -0.48
VPS39-207ENST00000563692 SEPT12Q8IYM1 358 aa12.03□□□□□ -0.48
VPS39-207ENST00000563692 FAM9BQ8IZU0 186 aa12.03□□□□□ -0.48
VPS39-207ENST00000563692 CCDC125Q86Z20 511 aa12.02□□□□□ -0.49
VPS39-207ENST00000563692 PARD3Q8TEW0 1356 aa12.02□□□□□ -0.49
VPS39-207ENST00000563692 KIAA0232Q92628 1395 aa12.02□□□□□ -0.49
VPS39-207ENST00000563692 TOPAZ1Q8N9V7 1692 aa12.01□□□□□ -0.49
VPS39-207ENST00000563692 ABCA3Q99758 1704 aa12.01□□□□□ -0.49
VPS39-207ENST00000563692 NWD2Q9ULI1 1742 aa12.01□□□□□ -0.49
VPS39-207ENST00000563692 EVA1CP58658 441 aa12.01□□□□□ -0.49
VPS39-207ENST00000563692 CHRNA2Q15822 529 aa12.01□□□□□ -0.49
VPS39-207ENST00000563692 CCDC184Q52MB2 194 aa12.01□□□□□ -0.49
VPS39-207ENST00000563692 ZNF692Q9BU19 519 aaPredicted RBP12.01□□□□□ -0.49
VPS39-207ENST00000563692 NPC1L1Q9UHC9 1359 aa12.01□□□□□ -0.49
VPS39-207ENST00000563692 NINLQ9Y2I6 1382 aa12.01□□□□□ -0.49
VPS39-207ENST00000563692 COL14A1Q05707 1796 aaKnown RBP12□□□□□ -0.49
VPS39-207ENST00000563692 NLRP6P59044 892 aa12□□□□□ -0.49
VPS39-207ENST00000563692 HNRNPUQ00839 825 aaKnown RBP eCLIP12□□□□□ -0.49
VPS39-207ENST00000563692 SF3B2Q13435 895 aaKnown RBP12□□□□□ -0.49
VPS39-207ENST00000563692 FAM98CQ17RN3 349 aaKnown RBP12□□□□□ -0.49
VPS39-207ENST00000563692 AMER1Q5JTC6 1135 aaPredicted RBP12□□□□□ -0.49
VPS39-207ENST00000563692 SLC12A5Q9H2X9 1139 aa12□□□□□ -0.49
VPS39-207ENST00000563692 STRN4Q9NRL3 753 aa12□□□□□ -0.49
VPS39-207ENST00000563692 USP6P35125 1406 aa12□□□□□ -0.49
VPS39-207ENST00000563692 PLCH1Q4KWH8 1693 aa12□□□□□ -0.49
VPS39-207ENST00000563692 ONECUT3O60422 494 aaPredicted RBP11.99□□□□□ -0.49
VPS39-207ENST00000563692 GCP02774 474 aa11.99□□□□□ -0.49
VPS39-207ENST00000563692 KRT27Q7Z3Y8 459 aa11.99□□□□□ -0.49
VPS39-207ENST00000563692 PNISRQ8TF01 805 aaKnown RBP11.99□□□□□ -0.49
VPS39-207ENST00000563692 USP19O94966 1318 aa11.99□□□□□ -0.49
VPS39-207ENST00000563692 GLI3P10071 1580 aa11.99□□□□□ -0.49
VPS39-207ENST00000563692 SPATA31A5Q5VU36 1347 aa11.98□□□□□ -0.49
VPS39-207ENST00000563692 SPATA31A7Q8IWB4 1347 aa11.98□□□□□ -0.49
VPS39-207ENST00000563692 ZBTB7CA1YPR0 619 aa11.98□□□□□ -0.49
VPS39-207ENST00000563692 TERF2IPQ9NYB0 399 aa11.98□□□□□ -0.49
VPS39-207ENST00000563692 CPDO75976 1380 aa11.97□□□□□ -0.49
VPS39-207ENST00000563692 CARD14Q9BXL6 1004 aa11.97□□□□□ -0.49
VPS39-207ENST00000563692 TTC21AQ8NDW8 1320 aa11.96□□□□□ -0.49
VPS39-207ENST00000563692 HDGFL2Q7Z4V5 671 aaPredicted RBP11.96□□□□□ -0.49
VPS39-207ENST00000563692 USP35Q9P2H5 1018 aa11.96□□□□□ -0.49
VPS39-207ENST00000563692 BLMP54132 1417 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms