RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SLIT1O75093 1534 aa16.96■□□□□ 0.31
CLK3-206ENST00000562078 SETD1BQ9UPS6 1966 aaKnown RBP16.96■□□□□ 0.31
CLK3-206ENST00000562078 USP32Q8NFA0 1604 aa16.96■□□□□ 0.31
CLK3-206ENST00000562078 TPM2P07951 284 aa16.96■□□□□ 0.31
CLK3-206ENST00000562078 ZNF142P52746 1687 aaPredicted RBP16.96■□□□□ 0.3
CLK3-206ENST00000562078 CENPQQ7L2Z9 268 aaPredicted RBP16.95■□□□□ 0.3
CLK3-206ENST00000562078 LTKP29376 864 aa16.95■□□□□ 0.3
CLK3-206ENST00000562078 PDE4CQ08493 712 aa16.95■□□□□ 0.3
CLK3-206ENST00000562078 ARHGAP23Q9P227 1491 aa16.94■□□□□ 0.3
CLK3-206ENST00000562078 SAFB2Q14151 953 aaKnown RBP eCLIP16.94■□□□□ 0.3
CLK3-206ENST00000562078 SLC12A5Q9H2X9 1139 aa16.94■□□□□ 0.3
CLK3-206ENST00000562078 USP19O94966 1318 aa16.94■□□□□ 0.3
CLK3-206ENST00000562078 PDE3BQ13370 1112 aa16.94■□□□□ 0.3
CLK3-206ENST00000562078 PLEKHG1Q9ULL1 1385 aa16.93■□□□□ 0.3
CLK3-206ENST00000562078 EVC2Q86UK5 1308 aa16.92■□□□□ 0.3
CLK3-206ENST00000562078 ANTXR1Q9H6X2 564 aa16.92■□□□□ 0.3
CLK3-206ENST00000562078 PRAM1Q96QH2 718 aa16.91■□□□□ 0.3
CLK3-206ENST00000562078 METP08581 1390 aa16.91■□□□□ 0.3
CLK3-206ENST00000562078 SHPRHQ149N8 1683 aa16.9■□□□□ 0.3
CLK3-206ENST00000562078 MYH16Q9H6N6 1097 aa16.9■□□□□ 0.3
CLK3-206ENST00000562078 KIAA1211Q6ZU35 1233 aa16.89■□□□□ 0.29
CLK3-206ENST00000562078 KNDC1Q76NI1 1749 aa16.89■□□□□ 0.29
CLK3-206ENST00000562078 ADAMTS13Q76LX8 1427 aa16.89■□□□□ 0.29
CLK3-206ENST00000562078 SEC24BO95487 1268 aa16.89■□□□□ 0.29
CLK3-206ENST00000562078 BECN1Q14457 450 aa16.89■□□□□ 0.29
CLK3-206ENST00000562078 CABP2Q9NPB3 220 aa16.89■□□□□ 0.29
CLK3-206ENST00000562078 DLC1Q96QB1 1528 aa16.88■□□□□ 0.29
CLK3-206ENST00000562078 MRE11P49959 708 aa16.88■□□□□ 0.29
CLK3-206ENST00000562078 PLEKHH1Q9ULM0 1364 aa16.88■□□□□ 0.29
CLK3-206ENST00000562078 SLC26A8Q96RN1 970 aa16.88■□□□□ 0.29
CLK3-206ENST00000562078 MINK1Q8N4C8 1332 aaPredicted RBP16.87■□□□□ 0.29
CLK3-206ENST00000562078 ANKRD36BQ8N2N9 1353 aa16.86■□□□□ 0.29
CLK3-206ENST00000562078 ABCC11Q96J66 1382 aa16.86■□□□□ 0.29
CLK3-206ENST00000562078 TNNT2P45379 298 aaPredicted RBP16.86■□□□□ 0.29
CLK3-206ENST00000562078 CCDC146Q8IYE0 955 aa16.86■□□□□ 0.29
CLK3-206ENST00000562078 GRPEL1Q9HAV7 217 aa16.86■□□□□ 0.29
CLK3-206ENST00000562078 MORC1Q86VD1 984 aa16.86■□□□□ 0.29
CLK3-206ENST00000562078 MCM4P33991 863 aa16.85■□□□□ 0.29
CLK3-206ENST00000562078 PUS7Q96PZ0 661 aaKnown RBP16.85■□□□□ 0.29
CLK3-206ENST00000562078 WAPLQ7Z5K2 1190 aa16.85■□□□□ 0.29
CLK3-206ENST00000562078 CGNL1Q0VF96 1302 aa16.84■□□□□ 0.29
CLK3-206ENST00000562078 SRPK2P78362 688 aaKnown RBP16.84■□□□□ 0.29
CLK3-206ENST00000562078 TRIM44Q96DX7 344 aaPredicted RBP16.84■□□□□ 0.29
CLK3-206ENST00000562078 DIP2AQ14689 1571 aa16.84■□□□□ 0.29
CLK3-206ENST00000562078 ANKRD26Q9UPS8 1709 aa16.84■□□□□ 0.29
CLK3-206ENST00000562078 CPS1P31327 1500 aa16.84■□□□□ 0.29
CLK3-206ENST00000562078 RIPK4P57078 832 aa16.84■□□□□ 0.29
CLK3-206ENST00000562078 ANKLE2Q86XL3 938 aa16.83■□□□□ 0.28
CLK3-206ENST00000562078 SPRYD3Q8NCJ5 442 aa16.83■□□□□ 0.28
CLK3-206ENST00000562078 POLR3AO14802 1390 aaPredicted RBP16.83■□□□□ 0.28
CLK3-206ENST00000562078 MED14O60244 1454 aa16.83■□□□□ 0.28
CLK3-206ENST00000562078 TRAK2O60296 914 aa16.82■□□□□ 0.28
CLK3-206ENST00000562078 PDIA4P13667 645 aaKnown RBP16.82■□□□□ 0.28
CLK3-206ENST00000562078 ZHX1Q9UKY1 873 aaPredicted RBP16.82■□□□□ 0.28
CLK3-206ENST00000562078 A0A1W2PP64 1363 aa16.82■□□□□ 0.28
CLK3-206ENST00000562078 TECPR2O15040 1411 aa16.81■□□□□ 0.28
CLK3-206ENST00000562078 ZNF521Q96K83 1311 aa16.81■□□□□ 0.28
CLK3-206ENST00000562078 BCL11BQ9C0K0 894 aaPredicted RBP16.81■□□□□ 0.28
CLK3-206ENST00000562078 FAM13BQ9NYF5 915 aa16.81■□□□□ 0.28
CLK3-206ENST00000562078 KIF20BQ96Q89 1820 aa16.81■□□□□ 0.28
CLK3-206ENST00000562078 NINLQ9Y2I6 1382 aa16.81■□□□□ 0.28
CLK3-206ENST00000562078 ARID3AQ99856 593 aa16.8■□□□□ 0.28
CLK3-206ENST00000562078 TBX22Q9Y458 520 aa16.8■□□□□ 0.28
CLK3-206ENST00000562078 FAM135BQ49AJ0 1406 aa16.8■□□□□ 0.28
CLK3-206ENST00000562078 ATAD2Q6PL18 1390 aa16.8■□□□□ 0.28
CLK3-206ENST00000562078 APAF1O14727 1248 aa16.79■□□□□ 0.28
CLK3-206ENST00000562078 NSD2O96028 1365 aa16.79■□□□□ 0.28
CLK3-206ENST00000562078 TBC1D2Q9BYX2 928 aa16.79■□□□□ 0.28
CLK3-206ENST00000562078 PTPRUQ92729 1446 aa16.78■□□□□ 0.28
CLK3-206ENST00000562078 ROBO2Q9HCK4 1378 aa16.78■□□□□ 0.28
CLK3-206ENST00000562078 CD163L1Q9NR16 1453 aa16.77■□□□□ 0.28
CLK3-206ENST00000562078 GOLGA2Q08379 1002 aa16.77■□□□□ 0.28
CLK3-206ENST00000562078 CDK19Q9BWU1 502 aa16.77■□□□□ 0.28
CLK3-206ENST00000562078 SIRT1Q96EB6 747 aa16.77■□□□□ 0.27
CLK3-206ENST00000562078 PRDM10Q9NQV6 1147 aa16.77■□□□□ 0.27
CLK3-206ENST00000562078 AMOTL2Q9Y2J4 779 aa16.77■□□□□ 0.27
CLK3-206ENST00000562078 DUSP27Q5VZP5 1158 aa16.76■□□□□ 0.27
CLK3-206ENST00000562078 MTHFSP49914 203 aa16.76■□□□□ 0.27
CLK3-206ENST00000562078 SMAP1Q8IYB5 467 aaPredicted RBP16.75■□□□□ 0.27
CLK3-206ENST00000562078 XRN1Q8IZH2 1706 aaKnown RBP16.75■□□□□ 0.27
CLK3-206ENST00000562078 BBXQ8WY36 941 aaPredicted RBP16.74■□□□□ 0.27
CLK3-206ENST00000562078 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.73■□□□□ 0.27
CLK3-206ENST00000562078 KDM4FA0A1W2PPD8 638 aa16.73■□□□□ 0.27
CLK3-206ENST00000562078 GAS2L3Q86XJ1 694 aa16.73■□□□□ 0.27
CLK3-206ENST00000562078 TERF2IPQ9NYB0 399 aa16.73■□□□□ 0.27
CLK3-206ENST00000562078 NPHP4O75161 1426 aaPredicted RBP16.73■□□□□ 0.27
CLK3-206ENST00000562078 VIRMAQ69YN4 1812 aaKnown RBP16.73■□□□□ 0.27
CLK3-206ENST00000562078 OFD1O75665 1012 aa16.73■□□□□ 0.27
CLK3-206ENST00000562078 SLFN5Q08AF3 891 aa16.73■□□□□ 0.27
CLK3-206ENST00000562078 CHD2O14647 1828 aaKnown RBP16.72■□□□□ 0.27
CLK3-206ENST00000562078 PTCH1Q13635 1447 aa16.72■□□□□ 0.27
CLK3-206ENST00000562078 WASLO00401 505 aaPredicted RBP16.72■□□□□ 0.27
CLK3-206ENST00000562078 GGNBP2Q9H3C7 697 aa16.72■□□□□ 0.27
CLK3-206ENST00000562078 NCKAP5LQ9HCH0 1330 aa16.72■□□□□ 0.27
CLK3-206ENST00000562078 PIK3R4Q99570 1358 aa16.72■□□□□ 0.27
CLK3-206ENST00000562078 CFAP53Q96M91 514 aa16.72■□□□□ 0.27
CLK3-206ENST00000562078 MAP7D2Q96T17 732 aa16.72■□□□□ 0.27
CLK3-206ENST00000562078 IQSEC2Q5JU85 1478 aa16.72■□□□□ 0.27
CLK3-206ENST00000562078 IGHDP01880 384 aa16.71■□□□□ 0.27
CLK3-206ENST00000562078 SPINK5Q9NQ38 1064 aaPredicted RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms