RNA–Protein interactions for RNA: ENST00000561304.5

ZEB1-223, Transcript of zinc finger E-box binding homeobox 1, human

TSL 1 (best)

Gene ZEB1, Length 1,383 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZEB1-223	ENST00000561304	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.9	□□□□□ -0.66
ZEB1-223	ENST00000561304	SOS2	Q07890	1332 aa	Predicted RBP	10.9	□□□□□ -0.66
ZEB1-223	ENST00000561304	NUTM2F	A1L443	756 aa		10.9	□□□□□ -0.67
ZEB1-223	ENST00000561304	HRC	P23327	699 aa		10.9	□□□□□ -0.67
ZEB1-223	ENST00000561304	MEX3C	Q5U5Q3	659 aa	Known RBP	10.89	□□□□□ -0.67
ZEB1-223	ENST00000561304	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.89	□□□□□ -0.67
ZEB1-223	ENST00000561304	TRPM3	Q9HCF6	1732 aa	Predicted RBP	10.88	□□□□□ -0.67
ZEB1-223	ENST00000561304	LRRC59	Q96AG4	307 aa	Known RBP	10.88	□□□□□ -0.67
ZEB1-223	ENST00000561304	FAM212A	Q96EL1	285 aa		10.88	□□□□□ -0.67
ZEB1-223	ENST00000561304	ITSN1	Q15811	1721 aa		10.87	□□□□□ -0.67
ZEB1-223	ENST00000561304	XPC	Q01831	940 aa	Predicted RBP	10.87	□□□□□ -0.67
ZEB1-223	ENST00000561304	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.87	□□□□□ -0.67
ZEB1-223	ENST00000561304	ESCO1	Q5FWF5	840 aa		10.87	□□□□□ -0.67
ZEB1-223	ENST00000561304	DCAF11	Q8TEB1	546 aa		10.87	□□□□□ -0.67
ZEB1-223	ENST00000561304	KDM2A	Q9Y2K7	1162 aa		10.87	□□□□□ -0.67
ZEB1-223	ENST00000561304	AFF2	P51816	1311 aa		10.86	□□□□□ -0.67
ZEB1-223	ENST00000561304	SPOCK2	Q92563	424 aa		10.86	□□□□□ -0.67
ZEB1-223	ENST00000561304	PRAM1	Q96QH2	718 aa		10.86	□□□□□ -0.67
ZEB1-223	ENST00000561304	CCDC61	Q9Y6R9	512 aa		10.86	□□□□□ -0.67
ZEB1-223	ENST00000561304	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	10.86	□□□□□ -0.67
ZEB1-223	ENST00000561304	CRYBG1	Q9Y4K1	1723 aa		10.86	□□□□□ -0.67
ZEB1-223	ENST00000561304	TOPAZ1	Q8N9V7	1692 aa		10.86	□□□□□ -0.67
ZEB1-223	ENST00000561304	ALS2	Q96Q42	1657 aa		10.86	□□□□□ -0.67
ZEB1-223	ENST00000561304	SIRT1	Q96EB6	747 aa		10.85	□□□□□ -0.67
ZEB1-223	ENST00000561304	PLCH1	Q4KWH8	1693 aa		10.85	□□□□□ -0.67
ZEB1-223	ENST00000561304	EP400	Q96L91	3159 aa		10.84	□□□□□ -0.67
ZEB1-223	ENST00000561304	NPHP3	Q7Z494	1330 aa		10.84	□□□□□ -0.67
ZEB1-223	ENST00000561304	POTEM	A6NI47	508 aa		10.84	□□□□□ -0.67
ZEB1-223	ENST00000561304	FOXO3	O43524	673 aa		10.84	□□□□□ -0.67
ZEB1-223	ENST00000561304	C8orf37	Q96NL8	207 aa		10.84	□□□□□ -0.67
ZEB1-223	ENST00000561304	TULP4	Q9NRJ4	1543 aa		10.84	□□□□□ -0.67
ZEB1-223	ENST00000561304	QRICH2	Q9H0J4	1663 aa		10.83	□□□□□ -0.67
ZEB1-223	ENST00000561304	TRPM1	Q7Z4N2	1603 aa		10.83	□□□□□ -0.68
ZEB1-223	ENST00000561304	ZNF772	Q68DY9	489 aa	Predicted RBP	10.83	□□□□□ -0.68
ZEB1-223	ENST00000561304	TRAK1	Q9UPV9	953 aa		10.83	□□□□□ -0.68
ZEB1-223	ENST00000561304	ADAMTS2	O95450	1211 aa		10.82	□□□□□ -0.68
ZEB1-223	ENST00000561304	RGS12	O14924	1447 aa		10.82	□□□□□ -0.68
ZEB1-223	ENST00000561304	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.81	□□□□□ -0.68
ZEB1-223	ENST00000561304	PHF12	Q96QT6	1004 aa		10.81	□□□□□ -0.68
ZEB1-223	ENST00000561304	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.81	□□□□□ -0.68
ZEB1-223	ENST00000561304	TNS3	Q68CZ2	1445 aa		10.81	□□□□□ -0.68
ZEB1-223	ENST00000561304	ANKAR	Q7Z5J8	1434 aa		10.81	□□□□□ -0.68
ZEB1-223	ENST00000561304	NRAP	Q86VF7	1730 aa		10.81	□□□□□ -0.68
ZEB1-223	ENST00000561304	BRWD3	Q6RI45	1802 aa		10.81	□□□□□ -0.68
ZEB1-223	ENST00000561304	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.81	□□□□□ -0.68
ZEB1-223	ENST00000561304	PRR36	Q9H6K5	1346 aa		10.81	□□□□□ -0.68
ZEB1-223	ENST00000561304	ATP7B	P35670	1465 aa		10.8	□□□□□ -0.68
ZEB1-223	ENST00000561304	GSE1	Q14687	1217 aa		10.8	□□□□□ -0.68
ZEB1-223	ENST00000561304	POGK	Q9P215	609 aa		10.8	□□□□□ -0.68
ZEB1-223	ENST00000561304	NWD2	Q9ULI1	1742 aa		10.8	□□□□□ -0.68
ZEB1-223	ENST00000561304	SPATA31A3	Q5VYP0	1347 aa		10.8	□□□□□ -0.68
ZEB1-223	ENST00000561304	PHF8	Q9UPP1	1060 aa		10.79	□□□□□ -0.68
ZEB1-223	ENST00000561304	PHRF1	Q9P1Y6	1649 aa	Known RBP	10.79	□□□□□ -0.68
ZEB1-223	ENST00000561304	BCL9L	Q86UU0	1499 aa		10.79	□□□□□ -0.68
ZEB1-223	ENST00000561304	ATRN	O75882	1429 aa		10.79	□□□□□ -0.68
ZEB1-223	ENST00000561304	DCAF8	Q5TAQ9	597 aa		10.78	□□□□□ -0.68
ZEB1-223	ENST00000561304	OTUD5	Q96G74	571 aa		10.78	□□□□□ -0.68
ZEB1-223	ENST00000561304	GLI3	P10071	1580 aa		10.78	□□□□□ -0.68
ZEB1-223	ENST00000561304	RXRB	P28702	533 aa		10.77	□□□□□ -0.68
ZEB1-223	ENST00000561304	NBPF1	Q3BBV0	1214 aa		10.77	□□□□□ -0.68
ZEB1-223	ENST00000561304	POTEG	Q6S5H5	508 aa		10.77	□□□□□ -0.68
ZEB1-223	ENST00000561304	KRT28	Q7Z3Y7	464 aa		10.77	□□□□□ -0.68
ZEB1-223	ENST00000561304	PMFBP1	Q8TBY8	1022 aa		10.77	□□□□□ -0.68
ZEB1-223	ENST00000561304	NGLY1	Q96IV0	654 aa		10.77	□□□□□ -0.68
ZEB1-223	ENST00000561304	STAC3	Q96MF2	364 aa		10.77	□□□□□ -0.68
ZEB1-223	ENST00000561304	SLIT2	O94813	1529 aa		10.77	□□□□□ -0.69
ZEB1-223	ENST00000561304	SIN3A	Q96ST3	1273 aa		10.77	□□□□□ -0.69
ZEB1-223	ENST00000561304	QTRT2	Q9H974	415 aa	Known RBP	10.77	□□□□□ -0.69
ZEB1-223	ENST00000561304	SBNO1	A3KN83	1393 aa		10.77	□□□□□ -0.69
ZEB1-223	ENST00000561304	WASL	O00401	505 aa	Predicted RBP	10.76	□□□□□ -0.69
ZEB1-223	ENST00000561304	FNBP4	Q8N3X1	1017 aa	Predicted RBP	10.76	□□□□□ -0.69
ZEB1-223	ENST00000561304	KIF12	Q96FN5	646 aa		10.76	□□□□□ -0.69
ZEB1-223	ENST00000561304	USP21	Q9UK80	565 aa		10.76	□□□□□ -0.69
ZEB1-223	ENST00000561304	CABLES1	Q8TDN4	633 aa		10.75	□□□□□ -0.69
ZEB1-223	ENST00000561304	COL14A1	Q05707	1796 aa	Known RBP	10.74	□□□□□ -0.69
ZEB1-223	ENST00000561304	EIF3A	Q14152	1382 aa	Known RBP	10.74	□□□□□ -0.69
ZEB1-223	ENST00000561304	RBM6	P78332	1123 aa	Known RBP	10.74	□□□□□ -0.69
ZEB1-223	ENST00000561304	L3MBTL2	Q969R5	705 aa		10.74	□□□□□ -0.69
ZEB1-223	ENST00000561304	AKAP12	Q02952	1782 aa		10.73	□□□□□ -0.69
ZEB1-223	ENST00000561304	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.73	□□□□□ -0.69
ZEB1-223	ENST00000561304	SGIP1	Q9BQI5	828 aa		10.73	□□□□□ -0.69
ZEB1-223	ENST00000561304	RALGAPB	Q86X10	1494 aa		10.72	□□□□□ -0.69
ZEB1-223	ENST00000561304	ARHGEF10	O15013	1369 aa		10.72	□□□□□ -0.69
ZEB1-223	ENST00000561304	GALR2	O43603	387 aa	Predicted RBP	10.72	□□□□□ -0.69
ZEB1-223	ENST00000561304	PSME1	Q06323	249 aa		10.72	□□□□□ -0.69
ZEB1-223	ENST00000561304	TRPC5	Q9UL62	973 aa	Predicted RBP	10.72	□□□□□ -0.69
ZEB1-223	ENST00000561304	NRK	Q7Z2Y5	1582 aa		10.71	□□□□□ -0.69
ZEB1-223	ENST00000561304	LMOD2	Q6P5Q4	547 aa		10.71	□□□□□ -0.69
ZEB1-223	ENST00000561304	NUDT16	Q96DE0	195 aa	Known RBP	10.71	□□□□□ -0.69
ZEB1-223	ENST00000561304	CDK19	Q9BWU1	502 aa		10.71	□□□□□ -0.69
ZEB1-223	ENST00000561304	NEUROD1	Q13562	356 aa		10.7	□□□□□ -0.7
ZEB1-223	ENST00000561304	POLR3A	O14802	1390 aa	Predicted RBP	10.7	□□□□□ -0.7
ZEB1-223	ENST00000561304	GPRASP1	Q5JY77	1395 aa		10.7	□□□□□ -0.7
ZEB1-223	ENST00000561304	PIK3C2A	O00443	1686 aa		10.69	□□□□□ -0.7
ZEB1-223	ENST00000561304	MAP3K13	O43283	966 aa		10.69	□□□□□ -0.7
ZEB1-223	ENST00000561304	MS4A3	Q96HJ5	214 aa		10.69	□□□□□ -0.7
ZEB1-223	ENST00000561304	DCBLD2	Q96PD2	775 aa		10.69	□□□□□ -0.7
ZEB1-223	ENST00000561304	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.69	□□□□□ -0.7
ZEB1-223	ENST00000561304	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.69	□□□□□ -0.7
ZEB1-223	ENST00000561304	CHRM1	P11229	460 aa	Predicted RBP	10.68	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 100 ms