RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 CCDC184Q52MB2 194 aa16.52■□□□□ 0.24
HERC1-205ENST00000559886 TTC21BQ7Z4L5 1316 aa16.52■□□□□ 0.23
HERC1-205ENST00000559886 MORC1Q86VD1 984 aa16.52■□□□□ 0.23
HERC1-205ENST00000559886 NLRP13Q86W25 1043 aa16.52■□□□□ 0.23
HERC1-205ENST00000559886 GGNBP2Q9H3C7 697 aa16.51■□□□□ 0.23
HERC1-205ENST00000559886 BRD4O60885 1362 aaPredicted RBP16.51■□□□□ 0.23
HERC1-205ENST00000559886 PPP2R1AP30153 589 aa16.51■□□□□ 0.23
HERC1-205ENST00000559886 TTC21AQ8NDW8 1320 aa16.5■□□□□ 0.23
HERC1-205ENST00000559886 MRS2Q9HD23 443 aa16.5■□□□□ 0.23
HERC1-205ENST00000559886 NME9Q86XW9 330 aa16.49■□□□□ 0.23
HERC1-205ENST00000559886 PIK3C2AO00443 1686 aa16.47■□□□□ 0.23
HERC1-205ENST00000559886 PSME1Q06323 249 aa16.47■□□□□ 0.23
HERC1-205ENST00000559886 SLAIN2Q9P270 581 aa16.47■□□□□ 0.23
HERC1-205ENST00000559886 FOXO3O43524 673 aa16.46■□□□□ 0.23
HERC1-205ENST00000559886 ZRANB1Q9UGI0 708 aa16.45■□□□□ 0.22
HERC1-205ENST00000559886 TRPM3Q9HCF6 1732 aaPredicted RBP16.45■□□□□ 0.22
HERC1-205ENST00000559886 USP54Q70EL1 1684 aa16.45■□□□□ 0.22
HERC1-205ENST00000559886 TNNT2P45379 298 aaPredicted RBP16.45■□□□□ 0.22
HERC1-205ENST00000559886 COG3Q96JB2 828 aa16.45■□□□□ 0.22
HERC1-205ENST00000559886 SCAF1Q9H7N4 1312 aaKnown RBP16.45■□□□□ 0.22
HERC1-205ENST00000559886 OVOS2A0A0J9YW53 1432 aa16.45■□□□□ 0.22
HERC1-205ENST00000559886 OVOS2Q6IE36 1432 aa16.45■□□□□ 0.22
HERC1-205ENST00000559886 USP31Q70CQ4 1352 aa16.44■□□□□ 0.22
HERC1-205ENST00000559886 MAP2P11137 1827 aaKnown RBP16.44■□□□□ 0.22
HERC1-205ENST00000559886 MARF1Q9Y4F3 1742 aaKnown RBP16.43■□□□□ 0.22
HERC1-205ENST00000559886 BRINP3Q76B58 766 aa16.43■□□□□ 0.22
HERC1-205ENST00000559886 NPHP3Q7Z494 1330 aa16.42■□□□□ 0.22
HERC1-205ENST00000559886 PAK3O75914 559 aaPredicted RBP16.42■□□□□ 0.22
HERC1-205ENST00000559886 KRT28Q7Z3Y7 464 aa16.42■□□□□ 0.22
HERC1-205ENST00000559886 PNISRQ8TF01 805 aaKnown RBP16.41■□□□□ 0.22
HERC1-205ENST00000559886 AATKQ6ZMQ8 1374 aa16.4■□□□□ 0.22
HERC1-205ENST00000559886 MTHFSP49914 203 aa16.4■□□□□ 0.22
HERC1-205ENST00000559886 XPCQ01831 940 aaPredicted RBP16.4■□□□□ 0.22
HERC1-205ENST00000559886 ABTB2Q8N961 1025 aa16.4■□□□□ 0.22
HERC1-205ENST00000559886 ALS2Q96Q42 1657 aa16.4■□□□□ 0.22
HERC1-205ENST00000559886 PXDNQ92626 1479 aa16.4■□□□□ 0.22
HERC1-205ENST00000559886 NLRP6P59044 892 aa16.39■□□□□ 0.21
HERC1-205ENST00000559886 DDX17Q92841 729 aaKnown RBP16.38■□□□□ 0.21
HERC1-205ENST00000559886 SBNO1A3KN83 1393 aa16.38■□□□□ 0.21
HERC1-205ENST00000559886 NHSL1Q5SYE7 1610 aa16.38■□□□□ 0.21
HERC1-205ENST00000559886 FAM9BQ8IZU0 186 aa16.38■□□□□ 0.21
HERC1-205ENST00000559886 FBLN1P23142 703 aa16.37■□□□□ 0.21
HERC1-205ENST00000559886 POLKQ9UBT6 870 aa16.37■□□□□ 0.21
HERC1-205ENST00000559886 SMG6Q86US8 1419 aaKnown RBP16.36■□□□□ 0.21
HERC1-205ENST00000559886 NUTM2GQ5VZR2 741 aa16.36■□□□□ 0.21
HERC1-205ENST00000559886 YTHDC1Q96MU7 727 aaKnown RBP16.36■□□□□ 0.21
HERC1-205ENST00000559886 ROBO1Q9Y6N7 1651 aa16.36■□□□□ 0.21
HERC1-205ENST00000559886 IQSEC2Q5JU85 1478 aa16.35■□□□□ 0.21
HERC1-205ENST00000559886 SHPRHQ149N8 1683 aa16.35■□□□□ 0.21
HERC1-205ENST00000559886 PNPLA6Q8IY17 1366 aa16.35■□□□□ 0.21
HERC1-205ENST00000559886 CFAP53Q96M91 514 aa16.35■□□□□ 0.21
HERC1-205ENST00000559886 SOS2Q07890 1332 aaPredicted RBP16.34■□□□□ 0.21
HERC1-205ENST00000559886 INSRP06213 1382 aa16.34■□□□□ 0.21
HERC1-205ENST00000559886 TNS3Q68CZ2 1445 aa16.34■□□□□ 0.21
HERC1-205ENST00000559886 COL3A1P02461 1466 aaPredicted RBP16.33■□□□□ 0.21
HERC1-205ENST00000559886 EMILIN1Q9Y6C2 1016 aa16.33■□□□□ 0.2
HERC1-205ENST00000559886 CDK12Q9NYV4 1490 aaPredicted RBP16.33■□□□□ 0.2
HERC1-205ENST00000559886 SPATA31A3Q5VYP0 1347 aa16.33■□□□□ 0.2
HERC1-205ENST00000559886 RRS1Q15050 365 aaKnown RBP16.33■□□□□ 0.2
HERC1-205ENST00000559886 SLIT3O75094 1523 aa16.32■□□□□ 0.2
HERC1-205ENST00000559886 LMOD2Q6P5Q4 547 aa16.32■□□□□ 0.2
HERC1-205ENST00000559886 USP19O94966 1318 aa16.31■□□□□ 0.2
HERC1-205ENST00000559886 NFAT5O94916 1531 aa16.31■□□□□ 0.2
HERC1-205ENST00000559886 TOM1O60784 492 aa16.31■□□□□ 0.2
HERC1-205ENST00000559886 PEAK1Q9H792 1746 aa16.31■□□□□ 0.2
HERC1-205ENST00000559886 AHDC1Q5TGY3 1603 aaPredicted RBP16.31■□□□□ 0.2
HERC1-205ENST00000559886 PPM1GO15355 546 aaPredicted RBP16.3■□□□□ 0.2
HERC1-205ENST00000559886 SOX12O15370 315 aa16.3■□□□□ 0.2
HERC1-205ENST00000559886 WDR43Q15061 677 aaKnown RBP eCLIP16.3■□□□□ 0.2
HERC1-205ENST00000559886 ARHGEF10O15013 1369 aa16.3■□□□□ 0.2
HERC1-205ENST00000559886 LTN1O94822 1766 aa16.3■□□□□ 0.2
HERC1-205ENST00000559886 KCNH5Q8NCM2 988 aa16.3■□□□□ 0.2
HERC1-205ENST00000559886 ADAMTS8Q9UP79 889 aa16.29■□□□□ 0.2
HERC1-205ENST00000559886 MAP3K19Q56UN5 1328 aa16.29■□□□□ 0.2
HERC1-205ENST00000559886 MED1Q15648 1581 aaPredicted RBP16.29■□□□□ 0.2
HERC1-205ENST00000559886 CRYBG1Q9Y4K1 1723 aa16.29■□□□□ 0.2
HERC1-205ENST00000559886 CERKQ8TCT0 537 aa16.28■□□□□ 0.2
HERC1-205ENST00000559886 KIF24Q5T7B8 1368 aa16.28■□□□□ 0.2
HERC1-205ENST00000559886 PHRF1Q9P1Y6 1649 aaKnown RBP16.28■□□□□ 0.2
HERC1-205ENST00000559886 GCP02774 474 aa16.27■□□□□ 0.2
HERC1-205ENST00000559886 DIAPH1O60610 1272 aaKnown RBP16.27■□□□□ 0.19
HERC1-205ENST00000559886 BLMP54132 1417 aaPredicted RBP16.27■□□□□ 0.19
HERC1-205ENST00000559886 FLT4P35916 1363 aa16.26■□□□□ 0.19
HERC1-205ENST00000559886 NUDCQ9Y266 331 aa16.26■□□□□ 0.19
HERC1-205ENST00000559886 UBAP1LF5GYI3 381 aa16.25■□□□□ 0.19
HERC1-205ENST00000559886 HNRNPUQ00839 825 aaKnown RBP eCLIP16.25■□□□□ 0.19
HERC1-205ENST00000559886 PHLPP1O60346 1717 aa16.24■□□□□ 0.19
HERC1-205ENST00000559886 AMPHP49418 695 aa16.24■□□□□ 0.19
HERC1-205ENST00000559886 RTL1A6NKG5 1358 aa16.24■□□□□ 0.19
HERC1-205ENST00000559886 IL13P35225 146 aa16.23■□□□□ 0.19
HERC1-205ENST00000559886 HSP90AB2PQ58FF8 381 aa16.23■□□□□ 0.19
HERC1-205ENST00000559886 ARHGEF25Q86VW2 580 aa16.23■□□□□ 0.19
HERC1-205ENST00000559886 ABCA3Q99758 1704 aa16.23■□□□□ 0.19
HERC1-205ENST00000559886 PIP4K2BP78356 416 aa16.23■□□□□ 0.19
HERC1-205ENST00000559886 PLEKHG5O94827 1062 aa16.22■□□□□ 0.19
HERC1-205ENST00000559886 HOXC9P31274 260 aa16.22■□□□□ 0.19
HERC1-205ENST00000559886 LRRC59Q96AG4 307 aaKnown RBP16.22■□□□□ 0.19
HERC1-205ENST00000559886 COL16A1Q07092 1604 aaPredicted RBP16.22■□□□□ 0.19
HERC1-205ENST00000559886 U2AF1L5P0DN76 240 aaPredicted RBP16.22■□□□□ 0.19
HERC1-205ENST00000559886 U2AF1Q01081 240 aaKnown RBP eCLIP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms