RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SMC5Q8IY18 1101 aa14.01□□□□□ -0.17
LDLR-208ENST00000558518 HDAC1Q13547 482 aaPredicted RBP14□□□□□ -0.17
LDLR-208ENST00000558518 POLR3AO14802 1390 aaPredicted RBP14□□□□□ -0.17
LDLR-208ENST00000558518 AK9Q5TCS8 1911 aa14□□□□□ -0.17
LDLR-208ENST00000558518 FAM177BA6PVY3 158 aa14□□□□□ -0.17
LDLR-208ENST00000558518 UQCRHLA0A096LP55 91 aa14□□□□□ -0.17
LDLR-208ENST00000558518 UQCRHP07919 91 aa14□□□□□ -0.17
LDLR-208ENST00000558518 PRIM1P49642 420 aaKnown RBP14□□□□□ -0.17
LDLR-208ENST00000558518 TSHZ3Q63HK5 1081 aa14□□□□□ -0.17
LDLR-208ENST00000558518 OTUD7AQ8TE49 926 aaPredicted RBP14□□□□□ -0.17
LDLR-208ENST00000558518 GDPD2Q9HCC8 539 aa14□□□□□ -0.17
LDLR-208ENST00000558518 TRIM35Q9UPQ4 493 aa14□□□□□ -0.17
LDLR-208ENST00000558518 DIAPH1O60610 1272 aaKnown RBP13.99□□□□□ -0.17
LDLR-208ENST00000558518 SLC4A10Q6U841 1118 aa13.99□□□□□ -0.17
LDLR-208ENST00000558518 UGGT1Q9NYU2 1555 aa13.99□□□□□ -0.17
LDLR-208ENST00000558518 TSC1Q92574 1164 aa13.99□□□□□ -0.17
LDLR-208ENST00000558518 NUP160Q12769 1436 aa13.98□□□□□ -0.17
LDLR-208ENST00000558518 JARID2Q92833 1246 aaPredicted RBP13.98□□□□□ -0.17
LDLR-208ENST00000558518 RBSNQ9H1K0 784 aa13.98□□□□□ -0.17
LDLR-208ENST00000558518 SCAPERQ9BY12 1400 aa13.98□□□□□ -0.17
LDLR-208ENST00000558518 KIF16BQ96L93 1317 aa13.98□□□□□ -0.17
LDLR-208ENST00000558518 AAMPQ13685 434 aa13.98□□□□□ -0.17
LDLR-208ENST00000558518 A0A0U1RQG5 324 aaPredicted RBP13.97□□□□□ -0.17
LDLR-208ENST00000558518 TPM2P07951 284 aa13.97□□□□□ -0.17
LDLR-208ENST00000558518 ZSCAN23Q3MJ62 389 aa13.97□□□□□ -0.17
LDLR-208ENST00000558518 ZNF830Q96NB3 372 aaPredicted RBP13.97□□□□□ -0.17
LDLR-208ENST00000558518 CDC45O75419 566 aa13.97□□□□□ -0.17
LDLR-208ENST00000558518 EIF2AK4Q9P2K8 1649 aaKnown RBP13.97□□□□□ -0.17
LDLR-208ENST00000558518 ERVK-7P63135 1459 aa13.97□□□□□ -0.17
LDLR-208ENST00000558518 FAM83GA6ND36 823 aa13.97□□□□□ -0.17
LDLR-208ENST00000558518 MYO5CQ9NQX4 1742 aa13.97□□□□□ -0.17
LDLR-208ENST00000558518 EVC2Q86UK5 1308 aa13.96□□□□□ -0.17
LDLR-208ENST00000558518 RBM25P49756 843 aaKnown RBP13.96□□□□□ -0.17
LDLR-208ENST00000558518 NOS1P29475 1434 aa13.96□□□□□ -0.17
LDLR-208ENST00000558518 ABCC2Q92887 1545 aa13.96□□□□□ -0.17
LDLR-208ENST00000558518 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.96□□□□□ -0.17
LDLR-208ENST00000558518 STAG3Q9UJ98 1225 aa13.96□□□□□ -0.18
LDLR-208ENST00000558518 ZHX1Q9UKY1 873 aaPredicted RBP13.95□□□□□ -0.18
LDLR-208ENST00000558518 KRT24Q2M2I5 525 aa13.95□□□□□ -0.18
LDLR-208ENST00000558518 BMP2KLQ5H9B9 411 aa13.95□□□□□ -0.18
LDLR-208ENST00000558518 KIF2CQ99661 725 aa13.95□□□□□ -0.18
LDLR-208ENST00000558518 LARP6Q9BRS8 491 aaKnown RBP13.95□□□□□ -0.18
LDLR-208ENST00000558518 CIZ1Q9ULV3 898 aaPredicted RBP13.95□□□□□ -0.18
LDLR-208ENST00000558518 NUTM2FA1L443 756 aa13.94□□□□□ -0.18
LDLR-208ENST00000558518 NECTIN2Q92692 538 aa13.94□□□□□ -0.18
LDLR-208ENST00000558518 NEK4P51957 841 aa13.94□□□□□ -0.18
LDLR-208ENST00000558518 SNX21Q969T3 373 aa13.94□□□□□ -0.18
LDLR-208ENST00000558518 PHACTR3Q96KR7 559 aa13.94□□□□□ -0.18
LDLR-208ENST00000558518 PDCL3Q9H2J4 239 aa13.94□□□□□ -0.18
LDLR-208ENST00000558518 KLHL40Q2TBA0 621 aa13.93□□□□□ -0.18
LDLR-208ENST00000558518 RILPL2Q969X0 211 aa13.93□□□□□ -0.18
LDLR-208ENST00000558518 NSFL1CQ9UNZ2 370 aaKnown RBP13.93□□□□□ -0.18
LDLR-208ENST00000558518 TRIM6-TRIM34B2RNG4 842 aa13.92□□□□□ -0.18
LDLR-208ENST00000558518 ST18O60284 1047 aa13.92□□□□□ -0.18
LDLR-208ENST00000558518 CASC1Q6TDU7 716 aa13.92□□□□□ -0.18
LDLR-208ENST00000558518 C17orf53Q8N3J3 647 aaPredicted RBP13.92□□□□□ -0.18
LDLR-208ENST00000558518 TWISTNBQ3B726 338 aaPredicted RBP13.92□□□□□ -0.18
LDLR-208ENST00000558518 SYNMO15061 1565 aa13.92□□□□□ -0.18
LDLR-208ENST00000558518 NPC1L1Q9UHC9 1359 aa13.92□□□□□ -0.18
LDLR-208ENST00000558518 CHMP3Q9Y3E7 222 aa13.92□□□□□ -0.18
LDLR-208ENST00000558518 CABP1Q9NZU7 370 aa13.91□□□□□ -0.18
LDLR-208ENST00000558518 PTPRTO14522 1441 aa13.91□□□□□ -0.18
LDLR-208ENST00000558518 ABCA8O94911 1581 aa13.91□□□□□ -0.18
LDLR-208ENST00000558518 PLEKHG5O94827 1062 aa13.91□□□□□ -0.18
LDLR-208ENST00000558518 GSPT1P15170 499 aaKnown RBP13.91□□□□□ -0.18
LDLR-208ENST00000558518 UPF3BQ9BZI7 483 aaKnown RBP13.91□□□□□ -0.18
LDLR-208ENST00000558518 MIS18AQ9NYP9 233 aa13.91□□□□□ -0.18
LDLR-208ENST00000558518 RTEL1-TNFRSF6BF6WH68 1400 aa13.91□□□□□ -0.18
LDLR-208ENST00000558518 ZBTB7BO15156 539 aaPredicted RBP13.9□□□□□ -0.18
LDLR-208ENST00000558518 OFD1O75665 1012 aa13.9□□□□□ -0.18
LDLR-208ENST00000558518 NUCB2P80303 420 aa13.9□□□□□ -0.18
LDLR-208ENST00000558518 SIRT2Q8IXJ6 389 aa13.9□□□□□ -0.18
LDLR-208ENST00000558518 ISY1Q9ULR0 285 aaKnown RBP13.9□□□□□ -0.18
LDLR-208ENST00000558518 ATP10AO60312 1499 aa13.9□□□□□ -0.18
LDLR-208ENST00000558518 CCDC27Q2M243 656 aa13.9□□□□□ -0.18
LDLR-208ENST00000558518 GCC1Q96CN9 775 aa13.9□□□□□ -0.18
LDLR-208ENST00000558518 PRAM1Q96QH2 718 aa13.9□□□□□ -0.18
LDLR-208ENST00000558518 TTC37Q6PGP7 1564 aa13.9□□□□□ -0.18
LDLR-208ENST00000558518 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.9□□□□□ -0.18
LDLR-208ENST00000558518 PTMSP20962 102 aa13.89□□□□□ -0.19
LDLR-208ENST00000558518 C8orf58Q8NAV2 365 aa13.89□□□□□ -0.19
LDLR-208ENST00000558518 EMILIN1Q9Y6C2 1016 aa13.89□□□□□ -0.19
LDLR-208ENST00000558518 FYB1O15117 783 aa13.89□□□□□ -0.19
LDLR-208ENST00000558518 ANO2Q9NQ90 1003 aa13.89□□□□□ -0.19
LDLR-208ENST00000558518 TERF2IPQ9NYB0 399 aa13.89□□□□□ -0.19
LDLR-208ENST00000558518 MAST1Q9Y2H9 1570 aa13.89□□□□□ -0.19
LDLR-208ENST00000558518 CDC42BPBQ9Y5S2 1711 aa13.89□□□□□ -0.19
LDLR-208ENST00000558518 RRS1Q15050 365 aaKnown RBP13.89□□□□□ -0.19
LDLR-208ENST00000558518 RABEP1Q15276 862 aa13.89□□□□□ -0.19
LDLR-208ENST00000558518 PHF23Q9BUL5 403 aaPredicted RBP13.89□□□□□ -0.19
LDLR-208ENST00000558518 DUOX2Q9NRD8 1548 aa13.89□□□□□ -0.19
LDLR-208ENST00000558518 KDM5AP29375 1690 aaKnown RBP13.88□□□□□ -0.19
LDLR-208ENST00000558518 HDGFL2Q7Z4V5 671 aaPredicted RBP13.88□□□□□ -0.19
LDLR-208ENST00000558518 GPT2Q8TD30 523 aa13.88□□□□□ -0.19
LDLR-208ENST00000558518 LMBRD1Q9NUN5 540 aa13.88□□□□□ -0.19
LDLR-208ENST00000558518 TMEM63CQ9P1W3 806 aa13.88□□□□□ -0.19
LDLR-208ENST00000558518 ARHGEF5Q12774 1597 aa13.88□□□□□ -0.19
LDLR-208ENST00000558518 ZRANB1Q9UGI0 708 aa13.88□□□□□ -0.19
LDLR-208ENST00000558518 MAP4K4O95819 1239 aaPredicted RBP13.88□□□□□ -0.19
LDLR-208ENST00000558518 INTS3Q68E01 1043 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms