RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, human

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-219	ENST00000544363	SSH2	Q76I76	1423 aa		40.93	■■■■■ 4.14
CCM2-219	ENST00000544363	NME9	Q86XW9	330 aa		40.93	■■■■■ 4.14
CCM2-219	ENST00000544363	LRRC7	Q96NW7	1537 aa		40.89	■■■■■ 4.14
CCM2-219	ENST00000544363	ESCO1	Q5FWF5	840 aa		40.89	■■■■■ 4.14
CCM2-219	ENST00000544363	ATF3	P18847	181 aa		40.88	■■■■■ 4.13
CCM2-219	ENST00000544363	XIRP1	Q702N8	1843 aa	Known RBP	40.87	■■■■■ 4.13
CCM2-219	ENST00000544363	TTC21A	Q8NDW8	1320 aa		40.86	■■■■■ 4.13
CCM2-219	ENST00000544363	MSH6	P52701	1360 aa		40.84	■■■■■ 4.13
CCM2-219	ENST00000544363	C1orf167	Q5SNV9	1468 aa		40.84	■■■■■ 4.13
CCM2-219	ENST00000544363	HNRNPU	Q00839	825 aa	Known RBP eCLIP	40.83	■■■■■ 4.13
CCM2-219	ENST00000544363	COG3	Q96JB2	828 aa		40.83	■■■■■ 4.13
CCM2-219	ENST00000544363	SCAF1	Q9H7N4	1312 aa	Known RBP	40.83	■■■■■ 4.13
CCM2-219	ENST00000544363	MTHFS	P49914	203 aa		40.82	■■■■■ 4.13
CCM2-219	ENST00000544363	ZRANB1	Q9UGI0	708 aa		40.82	■■■■■ 4.13
CCM2-219	ENST00000544363	CADPS2	Q86UW7	1296 aa		40.82	■■■■■ 4.12
CCM2-219	ENST00000544363	MST1R	Q04912	1400 aa		40.8	■■■■■ 4.12
CCM2-219	ENST00000544363	ORAI2	Q96SN7	254 aa		40.8	■■■■■ 4.12
CCM2-219	ENST00000544363	INSR	P06213	1382 aa		40.75	■■■■■ 4.11
CCM2-219	ENST00000544363	OVOS2	A0A0J9YW53	1432 aa		40.75	■■■■■ 4.11
CCM2-219	ENST00000544363	OVOS2	Q6IE36	1432 aa		40.75	■■■■■ 4.11
CCM2-219	ENST00000544363	WDR43	Q15061	677 aa	Known RBP eCLIP	40.75	■■■■■ 4.11
CCM2-219	ENST00000544363	CFAP53	Q96M91	514 aa		40.75	■■■■■ 4.11
CCM2-219	ENST00000544363	KIF1A	Q12756	1690 aa		40.73	■■■■■ 4.11
CCM2-219	ENST00000544363	AATK	Q6ZMQ8	1374 aa		40.71	■■■■■ 4.11
CCM2-219	ENST00000544363	PSME1	Q06323	249 aa		40.71	■■■■■ 4.11
CCM2-219	ENST00000544363	USP31	Q70CQ4	1352 aa		40.71	■■■■■ 4.11
CCM2-219	ENST00000544363	ADAMTS8	Q9UP79	889 aa		40.69	■■■■■ 4.1
CCM2-219	ENST00000544363	PIK3C2A	O00443	1686 aa		40.68	■■■■■ 4.1
CCM2-219	ENST00000544363	POLK	Q9UBT6	870 aa		40.67	■■■■■ 4.1
CCM2-219	ENST00000544363	FOXO3	O43524	673 aa		40.66	■■■■■ 4.1
CCM2-219	ENST00000544363	FBLN1	P23142	703 aa		40.65	■■■■■ 4.1
CCM2-219	ENST00000544363	PAK3	O75914	559 aa	Predicted RBP	40.64	■■■■■ 4.1
CCM2-219	ENST00000544363	MAP2	P11137	1827 aa	Known RBP	40.64	■■■■■ 4.1
CCM2-219	ENST00000544363	BLM	P54132	1417 aa	Predicted RBP	40.64	■■■■■ 4.1
CCM2-219	ENST00000544363	SHPRH	Q149N8	1683 aa		40.62	■■■■■ 4.09
CCM2-219	ENST00000544363	PNPLA6	Q8IY17	1366 aa		40.62	■■■■■ 4.09
CCM2-219	ENST00000544363	SMG6	Q86US8	1419 aa	Known RBP	40.61	■■■■■ 4.09
CCM2-219	ENST00000544363	ABTB2	Q8N961	1025 aa		40.61	■■■■■ 4.09
CCM2-219	ENST00000544363	ZBED9	Q6R2W3	1325 aa		40.6	■■■■■ 4.09
CCM2-219	ENST00000544363	NLRP6	P59044	892 aa		40.6	■■■■■ 4.09
CCM2-219	ENST00000544363	USP54	Q70EL1	1684 aa		40.59	■■■■■ 4.09
CCM2-219	ENST00000544363	COL3A1	P02461	1466 aa	Predicted RBP	40.59	■■■■■ 4.09
CCM2-219	ENST00000544363	KRT28	Q7Z3Y7	464 aa		40.56	■■■■■ 4.08
CCM2-219	ENST00000544363	EMILIN1	Q9Y6C2	1016 aa		40.56	■■■■■ 4.08
CCM2-219	ENST00000544363	RRS1	Q15050	365 aa	Known RBP	40.54	■■■■■ 4.08
CCM2-219	ENST00000544363	PPM1G	O15355	546 aa	Predicted RBP	40.53	■■■■■ 4.08
CCM2-219	ENST00000544363	XPC	Q01831	940 aa	Predicted RBP	40.53	■■■■■ 4.08
CCM2-219	ENST00000544363	MARF1	Q9Y4F3	1742 aa	Known RBP	40.53	■■■■■ 4.08
CCM2-219	ENST00000544363	SLAIN2	Q9P270	581 aa		40.53	■■■■■ 4.08
CCM2-219	ENST00000544363	CDK12	Q9NYV4	1490 aa	Predicted RBP	40.52	■■■■■ 4.08
CCM2-219	ENST00000544363	TRPM3	Q9HCF6	1732 aa	Predicted RBP	40.52	■■■■■ 4.08
CCM2-219	ENST00000544363	NUTM2G	Q5VZR2	741 aa		40.52	■■■■■ 4.08
CCM2-219	ENST00000544363	LTBP4	Q8N2S1	1624 aa		40.51	■■■■■ 4.08
CCM2-219	ENST00000544363	NUDC	Q9Y266	331 aa		40.51	■■■■■ 4.08
CCM2-219	ENST00000544363	DIAPH1	O60610	1272 aa	Known RBP	40.49	■■■■■ 4.07
CCM2-219	ENST00000544363	NPHP3	Q7Z494	1330 aa		40.48	■■■■■ 4.07
CCM2-219	ENST00000544363	BRINP3	Q76B58	766 aa		40.48	■■■■■ 4.07
CCM2-219	ENST00000544363	SOX12	O15370	315 aa		40.45	■■■■■ 4.07
CCM2-219	ENST00000544363	SENP3-EIF4A1	A0A087X0R7	540 aa		40.43	■■■■■ 4.06
CCM2-219	ENST00000544363	AEBP2	Q6ZN18	517 aa	Predicted RBP	40.43	■■■■■ 4.06
CCM2-219	ENST00000544363	DDX17	Q92841	729 aa	Known RBP	40.42	■■■■■ 4.06
CCM2-219	ENST00000544363	U2AF1L5	P0DN76	240 aa	Predicted RBP	40.42	■■■■■ 4.06
CCM2-219	ENST00000544363	U2AF1	Q01081	240 aa	Known RBP eCLIP	40.42	■■■■■ 4.06
CCM2-219	ENST00000544363	SBNO1	A3KN83	1393 aa		40.41	■■■■■ 4.06
CCM2-219	ENST00000544363	CCDC146	Q8IYE0	955 aa		40.41	■■■■■ 4.06
CCM2-219	ENST00000544363	MAP3K19	Q56UN5	1328 aa		40.39	■■■■■ 4.06
CCM2-219	ENST00000544363	U2SURP	O15042	1029 aa	Known RBP	40.39	■■■■■ 4.06
CCM2-219	ENST00000544363	PEAK1	Q9H792	1746 aa		40.37	■■■■■ 4.05
CCM2-219	ENST00000544363	PXDN	Q92626	1479 aa		40.37	■■■■■ 4.05
CCM2-219	ENST00000544363	ALS2	Q96Q42	1657 aa		40.37	■■■■■ 4.05
CCM2-219	ENST00000544363	LMOD2	Q6P5Q4	547 aa		40.36	■■■■■ 4.05
CCM2-219	ENST00000544363	IL13	P35225	146 aa		40.35	■■■■■ 4.05
CCM2-219	ENST00000544363	KCNH5	Q8NCM2	988 aa		40.34	■■■■■ 4.05
CCM2-219	ENST00000544363	RUNDC1	Q96C34	613 aa		40.34	■■■■■ 4.05
CCM2-219	ENST00000544363	SALL2	Q9Y467	1007 aa	Predicted RBP	40.33	■■■■■ 4.05
CCM2-219	ENST00000544363	KIF24	Q5T7B8	1368 aa		40.32	■■■■■ 4.05
CCM2-219	ENST00000544363	USP19	O94966	1318 aa		40.32	■■■■■ 4.04
CCM2-219	ENST00000544363	FLT4	P35916	1363 aa		40.31	■■■■■ 4.04
CCM2-219	ENST00000544363	SLIT3	O75094	1523 aa		40.31	■■■■■ 4.04
CCM2-219	ENST00000544363	NFAT5	O94916	1531 aa		40.31	■■■■■ 4.04
CCM2-219	ENST00000544363	AMPH	P49418	695 aa		40.3	■■■■■ 4.04
CCM2-219	ENST00000544363	TNS3	Q68CZ2	1445 aa		40.3	■■■■■ 4.04
CCM2-219	ENST00000544363	APAF1	O14727	1248 aa		40.29	■■■■■ 4.04
CCM2-219	ENST00000544363	HSP90AB2P	Q58FF8	381 aa		40.28	■■■■■ 4.04
CCM2-219	ENST00000544363	SPATA31A3	Q5VYP0	1347 aa		40.27	■■■■■ 4.04
CCM2-219	ENST00000544363	GC	P02774	474 aa		40.26	■■■■■ 4.04
CCM2-219	ENST00000544363	EIF4A2	Q14240	407 aa	Known RBP	40.26	■■■■■ 4.04
CCM2-219	ENST00000544363	SOS2	Q07890	1332 aa	Predicted RBP	40.26	■■■■■ 4.04
CCM2-219	ENST00000544363	NGEF	Q8N5V2	710 aa		40.25	■■■■■ 4.03
CCM2-219	ENST00000544363	PNN	Q9H307	717 aa	Known RBP	40.24	■■■■■ 4.03
CCM2-219	ENST00000544363	FCHSD2	O94868	740 aa		40.24	■■■■■ 4.03
CCM2-219	ENST00000544363	PLEKHF1	Q96S99	279 aa		40.23	■■■■■ 4.03
CCM2-219	ENST00000544363	RTL1	A6NKG5	1358 aa		40.23	■■■■■ 4.03
CCM2-219	ENST00000544363	ARHGEF10	O15013	1369 aa		40.22	■■■■■ 4.03
CCM2-219	ENST00000544363	LTN1	O94822	1766 aa		40.21	■■■■■ 4.03
CCM2-219	ENST00000544363	HOXC9	P31274	260 aa		40.21	■■■■■ 4.03
CCM2-219	ENST00000544363	IQSEC2	Q5JU85	1478 aa		40.21	■■■■■ 4.03
CCM2-219	ENST00000544363	PDE3B	Q13370	1112 aa		40.2	■■■■■ 4.03
CCM2-219	ENST00000544363	NHSL1	Q5SYE7	1610 aa		40.2	■■■■■ 4.03
CCM2-219	ENST00000544363	TCP11L2	Q8N4U5	519 aa		40.2	■■■■■ 4.03

Retrieved 100 of 20,778 RNA–protein pairs in 39 ms