RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 HDGFL2Q7Z4V5 671 aaPredicted RBP16.95■□□□□ 0.3
SMAD3-204ENST00000540846 ROBO1Q9Y6N7 1651 aa16.95■□□□□ 0.3
SMAD3-204ENST00000540846 SLAIN2Q9P270 581 aa16.94■□□□□ 0.3
SMAD3-204ENST00000540846 ZNF692Q9BU19 519 aaPredicted RBP16.94■□□□□ 0.3
SMAD3-204ENST00000540846 BRINP3Q76B58 766 aa16.93■□□□□ 0.3
SMAD3-204ENST00000540846 PXDNQ92626 1479 aa16.93■□□□□ 0.3
SMAD3-204ENST00000540846 ALS2Q96Q42 1657 aa16.93■□□□□ 0.3
SMAD3-204ENST00000540846 MYBBP1AQ9BQG0 1328 aaKnown RBP16.93■□□□□ 0.3
SMAD3-204ENST00000540846 KNSTRNQ9Y448 316 aa16.92■□□□□ 0.3
SMAD3-204ENST00000540846 BRD4O60885 1362 aaPredicted RBP16.91■□□□□ 0.3
SMAD3-204ENST00000540846 NGDNQ8NEJ9 315 aaKnown RBP16.91■□□□□ 0.3
SMAD3-204ENST00000540846 GTF3C3Q9Y5Q9 886 aa16.9■□□□□ 0.3
SMAD3-204ENST00000540846 NSD2O96028 1365 aa16.9■□□□□ 0.3
SMAD3-204ENST00000540846 CGNL1Q0VF96 1302 aa16.9■□□□□ 0.3
SMAD3-204ENST00000540846 TTC21BQ7Z4L5 1316 aa16.9■□□□□ 0.3
SMAD3-204ENST00000540846 AHDC1Q5TGY3 1603 aaPredicted RBP16.9■□□□□ 0.3
SMAD3-204ENST00000540846 FOXO3O43524 673 aa16.89■□□□□ 0.3
SMAD3-204ENST00000540846 CERKQ8TCT0 537 aa16.89■□□□□ 0.3
SMAD3-204ENST00000540846 FYB1O15117 783 aa16.89■□□□□ 0.29
SMAD3-204ENST00000540846 OVOS2A0A0J9YW53 1432 aa16.88■□□□□ 0.29
SMAD3-204ENST00000540846 OVOS2Q6IE36 1432 aa16.88■□□□□ 0.29
SMAD3-204ENST00000540846 CRYBG1Q9Y4K1 1723 aa16.87■□□□□ 0.29
SMAD3-204ENST00000540846 DDX17Q92841 729 aaKnown RBP16.87■□□□□ 0.29
SMAD3-204ENST00000540846 TTC21AQ8NDW8 1320 aa16.86■□□□□ 0.29
SMAD3-204ENST00000540846 CC2D1BQ5T0F9 858 aaKnown RBP16.86■□□□□ 0.29
SMAD3-204ENST00000540846 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.86■□□□□ 0.29
SMAD3-204ENST00000540846 NPHP3Q7Z494 1330 aa16.86■□□□□ 0.29
SMAD3-204ENST00000540846 HNRNPUQ00839 825 aaKnown RBP eCLIP16.85■□□□□ 0.292e-6■■■□□ 17.7
SMAD3-204ENST00000540846 CNGB1Q14028 1251 aaPredicted RBP16.85■□□□□ 0.29
SMAD3-204ENST00000540846 NLRP13Q86W25 1043 aa16.85■□□□□ 0.29
SMAD3-204ENST00000540846 NME9Q86XW9 330 aa16.85■□□□□ 0.29
SMAD3-204ENST00000540846 USP31Q70CQ4 1352 aa16.84■□□□□ 0.29
SMAD3-204ENST00000540846 SOS2Q07890 1332 aaPredicted RBP16.84■□□□□ 0.29
SMAD3-204ENST00000540846 COL16A1Q07092 1604 aaPredicted RBP16.84■□□□□ 0.29
SMAD3-204ENST00000540846 XPCQ01831 940 aaPredicted RBP16.84■□□□□ 0.29
SMAD3-204ENST00000540846 KRT28Q7Z3Y7 464 aa16.84■□□□□ 0.29
SMAD3-204ENST00000540846 GGNBP2Q9H3C7 697 aa16.84■□□□□ 0.29
SMAD3-204ENST00000540846 ZRANB1Q9UGI0 708 aa16.84■□□□□ 0.29
SMAD3-204ENST00000540846 SBNO1A3KN83 1393 aa16.84■□□□□ 0.29
SMAD3-204ENST00000540846 PSME1Q06323 249 aa16.83■□□□□ 0.28
SMAD3-204ENST00000540846 FAM9BQ8IZU0 186 aa16.83■□□□□ 0.28
SMAD3-204ENST00000540846 MED1Q15648 1581 aaPredicted RBP16.82■□□□□ 0.28
SMAD3-204ENST00000540846 PNISRQ8TF01 805 aaKnown RBP16.82■□□□□ 0.28
SMAD3-204ENST00000540846 TNS3Q68CZ2 1445 aa16.82■□□□□ 0.28
SMAD3-204ENST00000540846 TOM1O60784 492 aa16.81■□□□□ 0.28
SMAD3-204ENST00000540846 PHLPP1O60346 1717 aa16.81■□□□□ 0.28
SMAD3-204ENST00000540846 ABCA3Q99758 1704 aa16.81■□□□□ 0.28
SMAD3-204ENST00000540846 PHRF1Q9P1Y6 1649 aaKnown RBP16.81■□□□□ 0.28
SMAD3-204ENST00000540846 SLIT3O75094 1523 aa16.81■□□□□ 0.28
SMAD3-204ENST00000540846 MAP2P11137 1827 aaKnown RBP16.81■□□□□ 0.28
SMAD3-204ENST00000540846 UBAP1LF5GYI3 381 aa16.8■□□□□ 0.28
SMAD3-204ENST00000540846 ZBED9Q6R2W3 1325 aa16.79■□□□□ 0.28
SMAD3-204ENST00000540846 NFAT5O94916 1531 aa16.79■□□□□ 0.28
SMAD3-204ENST00000540846 SPATA31A3Q5VYP0 1347 aa16.79■□□□□ 0.28
SMAD3-204ENST00000540846 INSRP06213 1382 aa16.78■□□□□ 0.28
SMAD3-204ENST00000540846 COL22A1Q8NFW1 1626 aaPredicted RBP16.77■□□□□ 0.28
SMAD3-204ENST00000540846 PAK3O75914 559 aaPredicted RBP16.77■□□□□ 0.28
SMAD3-204ENST00000540846 MORC1Q86VD1 984 aa16.77■□□□□ 0.28
SMAD3-204ENST00000540846 USP19O94966 1318 aa16.77■□□□□ 0.28
SMAD3-204ENST00000540846 SMG6Q86US8 1419 aaKnown RBP16.77■□□□□ 0.27
SMAD3-204ENST00000540846 PEAK1Q9H792 1746 aa16.77■□□□□ 0.27
SMAD3-204ENST00000540846 PPP2R1AP30153 589 aa16.77■□□□□ 0.27
SMAD3-204ENST00000540846 ABTB2Q8N961 1025 aa16.77■□□□□ 0.27
SMAD3-204ENST00000540846 AATKQ6ZMQ8 1374 aa16.76■□□□□ 0.27
SMAD3-204ENST00000540846 LTN1O94822 1766 aa16.76■□□□□ 0.27
SMAD3-204ENST00000540846 COG3Q96JB2 828 aa16.76■□□□□ 0.27
SMAD3-204ENST00000540846 NLRP6P59044 892 aa16.74■□□□□ 0.27
SMAD3-204ENST00000540846 PIP4K2BP78356 416 aa16.74■□□□□ 0.27
SMAD3-204ENST00000540846 NUTM2GQ5VZR2 741 aa16.74■□□□□ 0.27
SMAD3-204ENST00000540846 ARHGEF10O15013 1369 aa16.74■□□□□ 0.27
SMAD3-204ENST00000540846 SHPRHQ149N8 1683 aa16.73■□□□□ 0.27
SMAD3-204ENST00000540846 FBLN1P23142 703 aa16.72■□□□□ 0.27
SMAD3-204ENST00000540846 TNNT2P45379 298 aaPredicted RBP16.72■□□□□ 0.27
SMAD3-204ENST00000540846 BLMP54132 1417 aaPredicted RBP16.72■□□□□ 0.27
SMAD3-204ENST00000540846 COL3A1P02461 1466 aaPredicted RBP16.72■□□□□ 0.27
SMAD3-204ENST00000540846 CDK12Q9NYV4 1490 aaPredicted RBP16.7■□□□□ 0.26
SMAD3-204ENST00000540846 POLKQ9UBT6 870 aa16.7■□□□□ 0.26
SMAD3-204ENST00000540846 COL18A1P39060 1754 aa16.69■□□□□ 0.26
SMAD3-204ENST00000540846 PNPLA6Q8IY17 1366 aa16.69■□□□□ 0.26
SMAD3-204ENST00000540846 MTHFSP49914 203 aa16.68■□□□□ 0.26
SMAD3-204ENST00000540846 LMOD2Q6P5Q4 547 aa16.68■□□□□ 0.26
SMAD3-204ENST00000540846 LRRC59Q96AG4 307 aaKnown RBP16.68■□□□□ 0.26
SMAD3-204ENST00000540846 EMILIN1Q9Y6C2 1016 aa16.68■□□□□ 0.26
SMAD3-204ENST00000540846 MAP3K19Q56UN5 1328 aa16.67■□□□□ 0.26
SMAD3-204ENST00000540846 GCP02774 474 aa16.67■□□□□ 0.26
SMAD3-204ENST00000540846 RRS1Q15050 365 aaKnown RBP16.67■□□□□ 0.26
SMAD3-204ENST00000540846 RGPD5Q99666 1765 aa16.66■□□□□ 0.26
SMAD3-204ENST00000540846 KCNH5Q8NCM2 988 aa16.65■□□□□ 0.26
SMAD3-204ENST00000540846 CABLES1Q8TDN4 633 aa16.65■□□□□ 0.26
SMAD3-204ENST00000540846 LMO7Q8WWI1 1683 aa16.65■□□□□ 0.26
SMAD3-204ENST00000540846 ABCC6O95255 1503 aa16.65■□□□□ 0.26
SMAD3-204ENST00000540846 KIF24Q5T7B8 1368 aa16.65■□□□□ 0.26
SMAD3-204ENST00000540846 RGPD1P0DJD0 1748 aa16.65■□□□□ 0.26
SMAD3-204ENST00000540846 SOX12O15370 315 aa16.64■□□□□ 0.25
SMAD3-204ENST00000540846 ARHGEF25Q86VW2 580 aa16.64■□□□□ 0.25
SMAD3-204ENST00000540846 RTL1A6NKG5 1358 aa16.63■□□□□ 0.25
SMAD3-204ENST00000540846 CPDO75976 1380 aa16.63■□□□□ 0.25
SMAD3-204ENST00000540846 FLT4P35916 1363 aa16.62■□□□□ 0.25
SMAD3-204ENST00000540846 HSPA1LP34931 641 aa16.6■□□□□ 0.25
SMAD3-204ENST00000540846 KIAA0232Q92628 1395 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms