RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 NME9Q86XW9 330 aa13.63□□□□□ -0.23
CLIP1-213ENST00000540338 ABCC11Q96J66 1382 aa13.63□□□□□ -0.23
CLIP1-213ENST00000540338 ZNF521Q96K83 1311 aa13.62□□□□□ -0.23
CLIP1-213ENST00000540338 LMOD2Q6P5Q4 547 aa13.62□□□□□ -0.23
CLIP1-213ENST00000540338 ZFYVE9O95405 1425 aa13.61□□□□□ -0.23
CLIP1-213ENST00000540338 HSP90AA1P07900 732 aaKnown RBP13.61□□□□□ -0.23
CLIP1-213ENST00000540338 CEBPAP49715 358 aaPredicted RBP13.61□□□□□ -0.23
CLIP1-213ENST00000540338 RRS1Q15050 365 aaKnown RBP13.61□□□□□ -0.23
CLIP1-213ENST00000540338 SKAP1Q86WV1 359 aa13.61□□□□□ -0.23
CLIP1-213ENST00000540338 IQGAP1P46940 1657 aa13.6□□□□□ -0.23
CLIP1-213ENST00000540338 NFE2L2Q16236 605 aa13.6□□□□□ -0.23
CLIP1-213ENST00000540338 EMILIN1Q9Y6C2 1016 aa13.6□□□□□ -0.23
CLIP1-213ENST00000540338 NEURL4Q96JN8 1562 aa13.6□□□□□ -0.23
CLIP1-213ENST00000540338 SETBP1Q9Y6X0 1596 aa13.6□□□□□ -0.23
CLIP1-213ENST00000540338 MVPQ14764 893 aaKnown RBP13.6□□□□□ -0.23
CLIP1-213ENST00000540338 DMRT2Q9Y5R5 561 aa13.6□□□□□ -0.23
CLIP1-213ENST00000540338 ATF7IPQ6VMQ6 1270 aa13.59□□□□□ -0.23
CLIP1-213ENST00000540338 NOB1Q9ULX3 412 aaKnown RBP13.59□□□□□ -0.23
CLIP1-213ENST00000540338 KIAA1210Q9ULL0 1709 aa13.59□□□□□ -0.23
CLIP1-213ENST00000540338 TRMT2AQ8IZ69 625 aaKnown RBP13.59□□□□□ -0.23
CLIP1-213ENST00000540338 NRXN1Q9ULB1 1477 aa13.58□□□□□ -0.24
CLIP1-213ENST00000540338 DIP2CQ9Y2E4 1556 aa13.58□□□□□ -0.24
CLIP1-213ENST00000540338 FBLN1P23142 703 aa13.58□□□□□ -0.24
CLIP1-213ENST00000540338 API5Q9BZZ5 524 aaKnown RBP13.58□□□□□ -0.24
CLIP1-213ENST00000540338 IL16Q14005 1332 aa13.57□□□□□ -0.24
CLIP1-213ENST00000540338 EIF5BO60841 1220 aaKnown RBP13.57□□□□□ -0.24
CLIP1-213ENST00000540338 ZNF428Q96B54 188 aa13.57□□□□□ -0.24
CLIP1-213ENST00000540338 POLKQ9UBT6 870 aa13.57□□□□□ -0.24
CLIP1-213ENST00000540338 SULT6B1Q6IMI4 303 aa13.57□□□□□ -0.24
CLIP1-213ENST00000540338 SSH1Q8WYL5 1049 aa13.57□□□□□ -0.24
CLIP1-213ENST00000540338 MROH1Q8NDA8 1641 aa13.57□□□□□ -0.24
CLIP1-213ENST00000540338 PPIP5K1Q6PFW1 1433 aa13.57□□□□□ -0.24
CLIP1-213ENST00000540338 LTV1Q96GA3 475 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-213ENST00000540338 PDZRN3Q9UPQ7 1066 aa13.57□□□□□ -0.24
CLIP1-213ENST00000540338 NLRP6P59044 892 aa13.56□□□□□ -0.24
CLIP1-213ENST00000540338 NCBP3Q53F19 620 aaKnown RBP13.56□□□□□ -0.24
CLIP1-213ENST00000540338 AMOTL2Q9Y2J4 779 aa13.56□□□□□ -0.24
CLIP1-213ENST00000540338 CAMSAP1Q5T5Y3 1602 aa13.56□□□□□ -0.24
CLIP1-213ENST00000540338 STK31Q9BXU1 1019 aa13.55□□□□□ -0.24
CLIP1-213ENST00000540338 SLC4A3P48751 1232 aa13.55□□□□□ -0.24
CLIP1-213ENST00000540338 TWISTNBQ3B726 338 aaPredicted RBP13.55□□□□□ -0.24
CLIP1-213ENST00000540338 FRMPD1Q5SYB0 1578 aa13.54□□□□□ -0.24
CLIP1-213ENST00000540338 DEKP35659 375 aaKnown RBP13.54□□□□□ -0.24
CLIP1-213ENST00000540338 THUMPD2Q9BTF0 503 aaKnown RBP13.54□□□□□ -0.24
CLIP1-213ENST00000540338 IGHDP01880 384 aa13.54□□□□□ -0.24
CLIP1-213ENST00000540338 GLI2P10070 1586 aa13.54□□□□□ -0.24
CLIP1-213ENST00000540338 MFAP1P55081 439 aaKnown RBP13.53□□□□□ -0.24
CLIP1-213ENST00000540338 ALDH1L2Q3SY69 923 aa13.53□□□□□ -0.24
CLIP1-213ENST00000540338 ANKRD45Q5TZF3 282 aa13.53□□□□□ -0.24
CLIP1-213ENST00000540338 CASC1Q6TDU7 716 aa13.53□□□□□ -0.24
CLIP1-213ENST00000540338 TSPOAP1O95153 1857 aa13.53□□□□□ -0.24
CLIP1-213ENST00000540338 IFT57Q9NWB7 429 aa13.52□□□□□ -0.24
CLIP1-213ENST00000540338 ACEP12821 1306 aa13.52□□□□□ -0.24
CLIP1-213ENST00000540338 ZRANB1Q9UGI0 708 aa13.52□□□□□ -0.25
CLIP1-213ENST00000540338 TRIM27P14373 513 aa13.51□□□□□ -0.25
CLIP1-213ENST00000540338 NUTM2GQ5VZR2 741 aa13.51□□□□□ -0.25
CLIP1-213ENST00000540338 TMEM57Q8N5G2 664 aa13.51□□□□□ -0.25
CLIP1-213ENST00000540338 SIRT1Q96EB6 747 aa13.51□□□□□ -0.25
CLIP1-213ENST00000540338 SLC4A10Q6U841 1118 aa13.51□□□□□ -0.25
CLIP1-213ENST00000540338 KDM2BQ8NHM5 1336 aa13.51□□□□□ -0.25
CLIP1-213ENST00000540338 CFAP44Q96MT7 982 aa13.51□□□□□ -0.25
CLIP1-213ENST00000540338 USP35Q9P2H5 1018 aa13.51□□□□□ -0.25
CLIP1-213ENST00000540338 NCKAP5LQ9HCH0 1330 aa13.51□□□□□ -0.25
CLIP1-213ENST00000540338 ABTB2Q8N961 1025 aa13.5□□□□□ -0.25
CLIP1-213ENST00000540338 TTC21BQ7Z4L5 1316 aa13.5□□□□□ -0.25
CLIP1-213ENST00000540338 PSME1Q06323 249 aa13.5□□□□□ -0.25
CLIP1-213ENST00000540338 ANKLE2Q86XL3 938 aa13.5□□□□□ -0.25
CLIP1-213ENST00000540338 HSCBQ8IWL3 235 aa13.5□□□□□ -0.25
CLIP1-213ENST00000540338 TMEM2Q9UHN6 1383 aa13.5□□□□□ -0.25
CLIP1-213ENST00000540338 NEXMIFQ5QGS0 1516 aa13.5□□□□□ -0.25
CLIP1-213ENST00000540338 QRICH2Q9H0J4 1663 aa13.5□□□□□ -0.25
CLIP1-213ENST00000540338 APBB1O00213 710 aa13.5□□□□□ -0.25
CLIP1-213ENST00000540338 TSPYL4Q9UJ04 414 aa13.5□□□□□ -0.25
CLIP1-213ENST00000540338 EDC4Q6P2E9 1401 aaKnown RBP13.5□□□□□ -0.25
CLIP1-213ENST00000540338 CHMP4AQ9BY43 222 aa13.49□□□□□ -0.25
CLIP1-213ENST00000540338 ADGRB1O14514 1584 aa13.49□□□□□ -0.25
CLIP1-213ENST00000540338 HMMRO75330 724 aa13.49□□□□□ -0.25
CLIP1-213ENST00000540338 LNPKQ9C0E8 428 aa13.49□□□□□ -0.25
CLIP1-213ENST00000540338 TRIM35Q9UPQ4 493 aa13.49□□□□□ -0.25
CLIP1-213ENST00000540338 RLBP1P12271 317 aa13.49□□□□□ -0.25
CLIP1-213ENST00000540338 GAS2L2Q8NHY3 880 aa13.49□□□□□ -0.25
CLIP1-213ENST00000540338 RSPH6AQ9H0K4 717 aa13.48□□□□□ -0.25
CLIP1-213ENST00000540338 MROH2AA6NES4 1674 aa13.48□□□□□ -0.25
CLIP1-213ENST00000540338 METP08581 1390 aa13.48□□□□□ -0.25
CLIP1-213ENST00000540338 SLKQ9H2G2 1235 aaPredicted RBP13.48□□□□□ -0.25
CLIP1-213ENST00000540338 TNNQ9UQP3 1299 aa13.48□□□□□ -0.25
CLIP1-213ENST00000540338 PCDHB15Q9Y5E8 787 aa13.48□□□□□ -0.25
CLIP1-213ENST00000540338 A2ML1A8K2U0 1454 aa13.48□□□□□ -0.25
CLIP1-213ENST00000540338 DCTN1Q14203 1278 aa13.47□□□□□ -0.25
CLIP1-213ENST00000540338 PHACTR3Q96KR7 559 aa13.47□□□□□ -0.25
CLIP1-213ENST00000540338 TBX22Q9Y458 520 aa13.46□□□□□ -0.25
CLIP1-213ENST00000540338 TULP4Q9NRJ4 1543 aa13.46□□□□□ -0.25
CLIP1-213ENST00000540338 ZC3H13Q5T200 1668 aaKnown RBP13.46□□□□□ -0.25
CLIP1-213ENST00000540338 HSP90AB1P08238 724 aaKnown RBP13.46□□□□□ -0.25
CLIP1-213ENST00000540338 SPRYD3Q8NCJ5 442 aa13.46□□□□□ -0.25
CLIP1-213ENST00000540338 PLEKHF1Q96S99 279 aa13.46□□□□□ -0.25
CLIP1-213ENST00000540338 ALKQ9UM73 1620 aa13.45□□□□□ -0.26
CLIP1-213ENST00000540338 IL13P35225 146 aa13.45□□□□□ -0.26
CLIP1-213ENST00000540338 GCC1Q96CN9 775 aa13.45□□□□□ -0.26
CLIP1-213ENST00000540338 MBIPQ9NS73 344 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms