RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 API5Q9BZZ5 524 aaKnown RBP15.91■□□□□ 0.14
MSH6-210ENST00000540021 KDM5DQ9BY66 1539 aa15.91■□□□□ 0.14
MSH6-210ENST00000540021 SMARCA5O60264 1052 aaPredicted RBP15.91■□□□□ 0.14
MSH6-210ENST00000540021 HDAC1Q13547 482 aaPredicted RBP15.91■□□□□ 0.14
MSH6-210ENST00000540021 ZSCAN30Q86W11 494 aa15.91■□□□□ 0.14
MSH6-210ENST00000540021 GAS2L2Q8NHY3 880 aa15.91■□□□□ 0.14
MSH6-210ENST00000540021 CFAP44Q96MT7 982 aa15.91■□□□□ 0.14
MSH6-210ENST00000540021 CABP1Q9NZU7 370 aa15.91■□□□□ 0.14
MSH6-210ENST00000540021 POLR3AO14802 1390 aaPredicted RBP15.91■□□□□ 0.14
MSH6-210ENST00000540021 POLR1AO95602 1720 aaPredicted RBP15.91■□□□□ 0.14
MSH6-210ENST00000540021 GNAI1P63096 354 aa15.9■□□□□ 0.14
MSH6-210ENST00000540021 CT47B1P0C2W7 299 aaPredicted RBP15.9■□□□□ 0.14
MSH6-210ENST00000540021 OS9Q13438 667 aaPredicted RBP15.9■□□□□ 0.14
MSH6-210ENST00000540021 ISY1Q9ULR0 285 aaKnown RBP15.9■□□□□ 0.14
MSH6-210ENST00000540021 TPM2P07951 284 aa15.9■□□□□ 0.14
MSH6-210ENST00000540021 RBM27Q9P2N5 1060 aaKnown RBP15.9■□□□□ 0.14
MSH6-210ENST00000540021 REC8O95072 547 aa15.89■□□□□ 0.14
MSH6-210ENST00000540021 NUCB1Q02818 461 aa15.89■□□□□ 0.13
MSH6-210ENST00000540021 RABEP1Q15276 862 aa15.89■□□□□ 0.13
MSH6-210ENST00000540021 NOS1P29475 1434 aa15.89■□□□□ 0.13
MSH6-210ENST00000540021 BAG4O95429 457 aaKnown RBP15.89■□□□□ 0.13
MSH6-210ENST00000540021 GAS2L3Q86XJ1 694 aa15.89■□□□□ 0.13
MSH6-210ENST00000540021 RTF1Q92541 710 aaKnown RBP15.89■□□□□ 0.13
MSH6-210ENST00000540021 SYCE3A1L190 88 aa15.88■□□□□ 0.13
MSH6-210ENST00000540021 HMMRO75330 724 aa15.88■□□□□ 0.13
MSH6-210ENST00000540021 KCNJ4P48050 445 aa15.88■□□□□ 0.13
MSH6-210ENST00000540021 CEP170Q5SW79 1584 aa15.88■□□□□ 0.13
MSH6-210ENST00000540021 SYAP1Q96A49 352 aaPredicted RBP15.88■□□□□ 0.13
MSH6-210ENST00000540021 CHMP3Q9Y3E7 222 aa15.88■□□□□ 0.13
MSH6-210ENST00000540021 TRAPPC8Q9Y2L5 1435 aa15.88■□□□□ 0.13
MSH6-210ENST00000540021 BMP2KLQ5H9B9 411 aa15.87■□□□□ 0.13
MSH6-210ENST00000540021 SMC5Q8IY18 1101 aa15.87■□□□□ 0.13
MSH6-210ENST00000540021 BCL11BQ9C0K0 894 aaPredicted RBP15.87■□□□□ 0.13
MSH6-210ENST00000540021 EIF2AK4Q9P2K8 1649 aaKnown RBP15.87■□□□□ 0.13
MSH6-210ENST00000540021 TAOK2Q9UL54 1235 aa15.87■□□□□ 0.13
MSH6-210ENST00000540021 LMOD3Q0VAK6 560 aa15.86■□□□□ 0.13
MSH6-210ENST00000540021 DRC7Q8IY82 874 aa15.86■□□□□ 0.13
MSH6-210ENST00000540021 ZBTB40Q9NUA8 1239 aa15.86■□□□□ 0.13
MSH6-210ENST00000540021 C16orf71Q8IYS4 520 aaPredicted RBP15.86■□□□□ 0.13
MSH6-210ENST00000540021 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.86■□□□□ 0.13
MSH6-210ENST00000540021 UQCRHLA0A096LP55 91 aa15.85■□□□□ 0.13
MSH6-210ENST00000540021 UQCRHP07919 91 aa15.85■□□□□ 0.13
MSH6-210ENST00000540021 ABCC10Q5T3U5 1492 aa15.85■□□□□ 0.13
MSH6-210ENST00000540021 RAB3GAP1Q15042 981 aa15.85■□□□□ 0.13
MSH6-210ENST00000540021 TSPYL6Q8N831 410 aa15.84■□□□□ 0.13
MSH6-210ENST00000540021 FSD2A1L4K1 749 aa15.84■□□□□ 0.13
MSH6-210ENST00000540021 HAP1P54257 671 aaPredicted RBP15.84■□□□□ 0.13
MSH6-210ENST00000540021 CHAF1AQ13111 956 aaPredicted RBP15.84■□□□□ 0.13
MSH6-210ENST00000540021 RRS1Q15050 365 aaKnown RBP15.84■□□□□ 0.13
MSH6-210ENST00000540021 COG3Q96JB2 828 aa15.84■□□□□ 0.13
MSH6-210ENST00000540021 STK31Q9BXU1 1019 aa15.84■□□□□ 0.13
MSH6-210ENST00000540021 FAM83GA6ND36 823 aa15.83■□□□□ 0.13
MSH6-210ENST00000540021 GOLGA6L4A6NEF3 574 aa15.83■□□□□ 0.12
MSH6-210ENST00000540021 CD2BP2O95400 341 aaKnown RBP15.83■□□□□ 0.12
MSH6-210ENST00000540021 CCDC27Q2M243 656 aa15.83■□□□□ 0.12
MSH6-210ENST00000540021 TSHZ3Q63HK5 1081 aa15.83■□□□□ 0.12
MSH6-210ENST00000540021 GDPD2Q9HCC8 539 aa15.83■□□□□ 0.12
MSH6-210ENST00000540021 CDK19Q9BWU1 502 aa15.82■□□□□ 0.12
MSH6-210ENST00000540021 PRDM15P57071 1507 aaPredicted RBP15.82■□□□□ 0.12
MSH6-210ENST00000540021 NPC1L1Q9UHC9 1359 aa15.82■□□□□ 0.12
MSH6-210ENST00000540021 EIF4G3O43432 1585 aaKnown RBP15.81■□□□□ 0.12
MSH6-210ENST00000540021 DUOX2Q9NRD8 1548 aa15.81■□□□□ 0.12
MSH6-210ENST00000540021 KLHL40Q2TBA0 621 aa15.81■□□□□ 0.12
MSH6-210ENST00000540021 SNX21Q969T3 373 aa15.81■□□□□ 0.12
MSH6-210ENST00000540021 EMILIN1Q9Y6C2 1016 aa15.81■□□□□ 0.12
MSH6-210ENST00000540021 TRPM1Q7Z4N2 1603 aa15.81■□□□□ 0.12
MSH6-210ENST00000540021 ZSCAN23Q3MJ62 389 aa15.81■□□□□ 0.12
MSH6-210ENST00000540021 CHAMP1Q96JM3 812 aa15.81■□□□□ 0.12
MSH6-210ENST00000540021 UPF3BQ9BZI7 483 aaKnown RBP15.81■□□□□ 0.12
MSH6-210ENST00000540021 MIS18AQ9NYP9 233 aa15.81■□□□□ 0.12
MSH6-210ENST00000540021 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.8■□□□□ 0.12
MSH6-210ENST00000540021 ZGPATQ8N5A5 531 aaKnown RBP15.8■□□□□ 0.12
MSH6-210ENST00000540021 TRIM35Q9UPQ4 493 aa15.8■□□□□ 0.12
MSH6-210ENST00000540021 FCHSD2O94868 740 aa15.8■□□□□ 0.12
MSH6-210ENST00000540021 C14orf93Q9H972 538 aaKnown RBP15.8■□□□□ 0.12
MSH6-210ENST00000540021 PRDM10Q9NQV6 1147 aa15.8■□□□□ 0.12
MSH6-210ENST00000540021 EXOC6BQ9Y2D4 811 aa15.8■□□□□ 0.12
MSH6-210ENST00000540021 ATAD2Q6PL18 1390 aa15.8■□□□□ 0.12
MSH6-210ENST00000540021 ERBB4Q15303 1308 aa15.79■□□□□ 0.12
MSH6-210ENST00000540021 RBM25P49756 843 aaKnown RBP15.79■□□□□ 0.12
MSH6-210ENST00000540021 NFE2L2Q16236 605 aa15.79■□□□□ 0.12
MSH6-210ENST00000540021 LTV1Q96GA3 475 aaPredicted RBP15.79■□□□□ 0.12
MSH6-210ENST00000540021 FYB1O15117 783 aa15.79■□□□□ 0.12
MSH6-210ENST00000540021 PRIM1P49642 420 aaKnown RBP15.79■□□□□ 0.12
MSH6-210ENST00000540021 ALDH1L2Q3SY69 923 aa15.79■□□□□ 0.12
MSH6-210ENST00000540021 CCDC39Q9UFE4 941 aa15.79■□□□□ 0.12
MSH6-210ENST00000540021 SLC4A2P04920 1241 aa15.79■□□□□ 0.12
MSH6-210ENST00000540021 FKBP5Q13451 457 aaPredicted RBP15.79■□□□□ 0.12
MSH6-210ENST00000540021 CSPP1Q1MSJ5 1256 aa15.78■□□□□ 0.12
MSH6-210ENST00000540021 PHF14O94880 888 aa15.78■□□□□ 0.12
MSH6-210ENST00000540021 MAP4K4O95819 1239 aaPredicted RBP15.78■□□□□ 0.12
MSH6-210ENST00000540021 ERC2O15083 957 aa15.78■□□□□ 0.12
MSH6-210ENST00000540021 OTUD7AQ8TE49 926 aaPredicted RBP15.77■□□□□ 0.12
MSH6-210ENST00000540021 PHACTR3Q96KR7 559 aa15.77■□□□□ 0.12
MSH6-210ENST00000540021 MBIPQ9NS73 344 aa15.77■□□□□ 0.12
MSH6-210ENST00000540021 SULT6B1Q6IMI4 303 aa15.77■□□□□ 0.12
MSH6-210ENST00000540021 LARP6Q9BRS8 491 aaKnown RBP15.77■□□□□ 0.12
MSH6-210ENST00000540021 NAP1L2Q9ULW6 460 aaPredicted RBP15.77■□□□□ 0.12
MSH6-210ENST00000540021 WAPLQ7Z5K2 1190 aa15.77■□□□□ 0.11
MSH6-210ENST00000540021 TSPY26PQ9H489 355 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms