RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CCDC146Q8IYE0 955 aa11.47□□□□□ -0.57
LIMCH1-209ENST00000509277 CABLES1Q8TDN4 633 aa11.47□□□□□ -0.57
LIMCH1-209ENST00000509277 KDM5AP29375 1690 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-209ENST00000509277 NEFMP07197 916 aa11.46□□□□□ -0.58
LIMCH1-209ENST00000509277 MTHFSP49914 203 aa11.46□□□□□ -0.58
LIMCH1-209ENST00000509277 AMER1Q5JTC6 1135 aaPredicted RBP11.46□□□□□ -0.58
LIMCH1-209ENST00000509277 FYB1O15117 783 aa11.45□□□□□ -0.58
LIMCH1-209ENST00000509277 CADPS2Q86UW7 1296 aa11.45□□□□□ -0.58
LIMCH1-209ENST00000509277 UBAP1LF5GYI3 381 aa11.45□□□□□ -0.58
LIMCH1-209ENST00000509277 PPP2R1AP30153 589 aa11.45□□□□□ -0.58
LIMCH1-209ENST00000509277 RALBP1Q15311 655 aa11.45□□□□□ -0.58
LIMCH1-209ENST00000509277 MYBBP1AQ9BQG0 1328 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-209ENST00000509277 ZC3H6P61129 1189 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-209ENST00000509277 KRT28Q7Z3Y7 464 aa11.44□□□□□ -0.58
LIMCH1-209ENST00000509277 FAM135BQ49AJ0 1406 aa11.44□□□□□ -0.58
LIMCH1-209ENST00000509277 ANKRD36BQ8N2N9 1353 aa11.43□□□□□ -0.58
LIMCH1-209ENST00000509277 SBNO2Q9Y2G9 1366 aa11.43□□□□□ -0.58
LIMCH1-209ENST00000509277 NLRP13Q86W25 1043 aa11.43□□□□□ -0.58
LIMCH1-209ENST00000509277 SLAIN2Q9P270 581 aa11.43□□□□□ -0.58
LIMCH1-209ENST00000509277 EMILIN1Q9Y6C2 1016 aa11.43□□□□□ -0.58
LIMCH1-209ENST00000509277 ZNF142P52746 1687 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-209ENST00000509277 MED14O60244 1454 aa11.43□□□□□ -0.58
LIMCH1-209ENST00000509277 U2AF1L5P0DN76 240 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-209ENST00000509277 AMPHP49418 695 aa11.43□□□□□ -0.58
LIMCH1-209ENST00000509277 U2AF1Q01081 240 aaKnown RBP eCLIP11.43□□□□□ -0.58
LIMCH1-209ENST00000509277 PIK3R4Q99570 1358 aa11.42□□□□□ -0.58
LIMCH1-209ENST00000509277 SIRT1Q96EB6 747 aa11.42□□□□□ -0.58
LIMCH1-209ENST00000509277 TTC21BQ7Z4L5 1316 aa11.42□□□□□ -0.58
LIMCH1-209ENST00000509277 ZNF692Q9BU19 519 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-209ENST00000509277 NUTM2BA6NNL0 878 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-209ENST00000509277 NUTM2EB1AL46 878 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-209ENST00000509277 POLR1AO95602 1720 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-209ENST00000509277 NUTM2AQ8IVF1 878 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-209ENST00000509277 CFAP53Q96M91 514 aa11.41□□□□□ -0.58
LIMCH1-209ENST00000509277 BRPF3Q9ULD4 1205 aa11.41□□□□□ -0.58
LIMCH1-209ENST00000509277 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-209ENST00000509277 RRP7AQ9Y3A4 280 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-209ENST00000509277 HMOX1P09601 288 aa11.4□□□□□ -0.58
LIMCH1-209ENST00000509277 CCER2I3L3R5 266 aa11.4□□□□□ -0.59
LIMCH1-209ENST00000509277 ADGRL3Q9HAR2 1447 aa11.39□□□□□ -0.59
LIMCH1-209ENST00000509277 DAXXQ9UER7 740 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-209ENST00000509277 TECPR2O15040 1411 aa11.39□□□□□ -0.59
LIMCH1-209ENST00000509277 PTCH1Q13635 1447 aa11.39□□□□□ -0.59
LIMCH1-209ENST00000509277 SETD1AO15047 1707 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-209ENST00000509277 CHRNA2Q15822 529 aa11.39□□□□□ -0.59
LIMCH1-209ENST00000509277 DIP2AQ14689 1571 aa11.38□□□□□ -0.59
LIMCH1-209ENST00000509277 FANCIQ9NVI1 1328 aa11.38□□□□□ -0.59
LIMCH1-209ENST00000509277 USP35Q9P2H5 1018 aa11.38□□□□□ -0.59
LIMCH1-209ENST00000509277 ADAMTS8Q9UP79 889 aa11.38□□□□□ -0.59
LIMCH1-209ENST00000509277 DLC1Q96QB1 1528 aa11.38□□□□□ -0.59
LIMCH1-209ENST00000509277 ATP7BP35670 1465 aa11.38□□□□□ -0.59
LIMCH1-209ENST00000509277 CPS1P31327 1500 aa11.37□□□□□ -0.59
LIMCH1-209ENST00000509277 PLEKHG3A1L390 1219 aa11.37□□□□□ -0.59
LIMCH1-209ENST00000509277 CSB-PGBD3P0DP91 1061 aa11.37□□□□□ -0.59
LIMCH1-209ENST00000509277 BRINP3Q76B58 766 aa11.37□□□□□ -0.59
LIMCH1-209ENST00000509277 RGPD8O14715 1765 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-209ENST00000509277 A0A0G2JS52 829 aa11.36□□□□□ -0.59
LIMCH1-209ENST00000509277 ADAMTS2O95450 1211 aa11.36□□□□□ -0.59
LIMCH1-209ENST00000509277 STRCQ7RTU9 1775 aa11.36□□□□□ -0.59
LIMCH1-209ENST00000509277 CHD2O14647 1828 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-209ENST00000509277 USHBP1Q8N6Y0 703 aa11.36□□□□□ -0.59
LIMCH1-209ENST00000509277 PKNOX2Q96KN3 472 aa11.36□□□□□ -0.59
LIMCH1-209ENST00000509277 HSP90AB2PQ58FF8 381 aa11.35□□□□□ -0.59
LIMCH1-209ENST00000509277 VSIG10Q8N0Z9 540 aa11.35□□□□□ -0.59
LIMCH1-209ENST00000509277 NUDCQ9Y266 331 aa11.35□□□□□ -0.59
LIMCH1-209ENST00000509277 NKTRP30414 1462 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-209ENST00000509277 TOM1O60784 492 aa11.34□□□□□ -0.59
LIMCH1-209ENST00000509277 NPHP3Q7Z494 1330 aa11.34□□□□□ -0.59
LIMCH1-209ENST00000509277 STRN4Q9NRL3 753 aa11.34□□□□□ -0.59
LIMCH1-209ENST00000509277 DIAPH1O60610 1272 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-209ENST00000509277 PUS7Q96PZ0 661 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-209ENST00000509277 POLKQ9UBT6 870 aa11.34□□□□□ -0.59
LIMCH1-209ENST00000509277 PARD3Q8TEW0 1356 aa11.33□□□□□ -0.6
LIMCH1-209ENST00000509277 NINLQ9Y2I6 1382 aa11.33□□□□□ -0.6
LIMCH1-209ENST00000509277 C1orf167Q5SNV9 1468 aa11.33□□□□□ -0.6
LIMCH1-209ENST00000509277 PNISRQ8TF01 805 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-209ENST00000509277 USP6P35125 1406 aa11.33□□□□□ -0.6
LIMCH1-209ENST00000509277 APAF1O14727 1248 aa11.33□□□□□ -0.6
LIMCH1-209ENST00000509277 CCDC9Q9Y3X0 531 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-209ENST00000509277 SLC4A3P48751 1232 aa11.32□□□□□ -0.6
LIMCH1-209ENST00000509277 EDC4Q6P2E9 1401 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-209ENST00000509277 LRRC7Q96NW7 1537 aa11.32□□□□□ -0.6
LIMCH1-209ENST00000509277 NALCNQ8IZF0 1738 aa11.32□□□□□ -0.6
LIMCH1-209ENST00000509277 XRN1Q8IZH2 1706 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-209ENST00000509277 MYOM1P52179 1685 aa11.32□□□□□ -0.6
LIMCH1-209ENST00000509277 PRDM11Q9NQV5 511 aa11.32□□□□□ -0.6
LIMCH1-209ENST00000509277 CD163L1Q9NR16 1453 aa11.31□□□□□ -0.6
LIMCH1-209ENST00000509277 MAPK8IP3Q9UPT6 1336 aa11.31□□□□□ -0.6
LIMCH1-209ENST00000509277 STRCP1A6NGW2 1772 aa11.31□□□□□ -0.6
LIMCH1-209ENST00000509277 MAP3K19Q56UN5 1328 aa11.31□□□□□ -0.6
LIMCH1-209ENST00000509277 GCP02774 474 aa11.31□□□□□ -0.6
LIMCH1-209ENST00000509277 UBE2Q2Q8WVN8 375 aa11.3□□□□□ -0.6
LIMCH1-209ENST00000509277 NLRP2Q9NX02 1062 aa11.3□□□□□ -0.6
LIMCH1-209ENST00000509277 PPP4R2Q9NY27 417 aa11.3□□□□□ -0.6
LIMCH1-209ENST00000509277 SULT6B1Q6IMI4 303 aa11.3□□□□□ -0.6
LIMCH1-209ENST00000509277 LRRC59Q96AG4 307 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-209ENST00000509277 BRD4O60885 1362 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-209ENST00000509277 EVA1CP58658 441 aa11.29□□□□□ -0.6
LIMCH1-209ENST00000509277 KNDC1Q76NI1 1749 aa11.29□□□□□ -0.6
LIMCH1-209ENST00000509277 AEBP1Q8IUX7 1158 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms