RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 NSD2O96028 1365 aa13.88□□□□□ -0.19
VPS52-217ENST00000478934 USP19O94966 1318 aa13.87□□□□□ -0.19
VPS52-217ENST00000478934 SSH1Q8WYL5 1049 aa13.87□□□□□ -0.19
VPS52-217ENST00000478934 SMC4Q9NTJ3 1288 aa13.87□□□□□ -0.19
VPS52-217ENST00000478934 PDZRN3Q9UPQ7 1066 aa13.87□□□□□ -0.19
VPS52-217ENST00000478934 NLRP1Q9C000 1473 aa13.86□□□□□ -0.19
VPS52-217ENST00000478934 MAPK8IP3Q9UPT6 1336 aa13.86□□□□□ -0.19
VPS52-217ENST00000478934 DIAPH1O60610 1272 aaKnown RBP13.86□□□□□ -0.19
VPS52-217ENST00000478934 HMOX1P09601 288 aa13.86□□□□□ -0.19
VPS52-217ENST00000478934 HDGFL2Q7Z4V5 671 aaPredicted RBP13.86□□□□□ -0.19
VPS52-217ENST00000478934 THUMPD2Q9BTF0 503 aaKnown RBP13.86□□□□□ -0.19
VPS52-217ENST00000478934 ALKQ9UM73 1620 aa13.86□□□□□ -0.19
VPS52-217ENST00000478934 TSPOAP1O95153 1857 aa13.86□□□□□ -0.19
VPS52-217ENST00000478934 COL3A1P02461 1466 aaPredicted RBP13.86□□□□□ -0.19
VPS52-217ENST00000478934 ATAD2Q6PL18 1390 aa13.85□□□□□ -0.19
VPS52-217ENST00000478934 TRIM27P14373 513 aa13.85□□□□□ -0.19
VPS52-217ENST00000478934 TXNDC2Q86VQ3 553 aa13.85□□□□□ -0.19
VPS52-217ENST00000478934 ZKSCAN2Q63HK3 967 aa13.84□□□□□ -0.19
VPS52-217ENST00000478934 FTSJ3Q8IY81 847 aaKnown RBP13.84□□□□□ -0.19
VPS52-217ENST00000478934 PHACTR3Q96KR7 559 aa13.84□□□□□ -0.19
VPS52-217ENST00000478934 NOB1Q9ULX3 412 aaKnown RBP13.84□□□□□ -0.19
VPS52-217ENST00000478934 MVPQ14764 893 aaKnown RBP13.84□□□□□ -0.19
VPS52-217ENST00000478934 DZIP1LQ8IYY4 767 aaKnown RBP13.84□□□□□ -0.19
VPS52-217ENST00000478934 POLKQ9UBT6 870 aa13.84□□□□□ -0.19
VPS52-217ENST00000478934 EMILIN1Q9Y6C2 1016 aa13.84□□□□□ -0.19
VPS52-217ENST00000478934 FRAT2O75474 233 aaPredicted RBP13.83□□□□□ -0.19
VPS52-217ENST00000478934 PRKAR2BP31323 418 aa13.83□□□□□ -0.19
VPS52-217ENST00000478934 NME9Q86XW9 330 aa13.83□□□□□ -0.19
VPS52-217ENST00000478934 ARHGEF40Q8TER5 1519 aa13.83□□□□□ -0.2
VPS52-217ENST00000478934 NINLQ9Y2I6 1382 aa13.83□□□□□ -0.2
VPS52-217ENST00000478934 ITPRIPQ8IWB1 547 aa13.82□□□□□ -0.2
VPS52-217ENST00000478934 PMFBP1Q8TBY8 1022 aa13.82□□□□□ -0.2
VPS52-217ENST00000478934 USP35Q9P2H5 1018 aa13.81□□□□□ -0.2
VPS52-217ENST00000478934 ADGRB2O60241 1585 aa13.81□□□□□ -0.2
VPS52-217ENST00000478934 METP08581 1390 aa13.81□□□□□ -0.2
VPS52-217ENST00000478934 ELL2O00472 640 aaPredicted RBP13.81□□□□□ -0.2
VPS52-217ENST00000478934 A2ML1A8K2U0 1454 aa13.8□□□□□ -0.2
VPS52-217ENST00000478934 NUTM2FA1L443 756 aa13.8□□□□□ -0.2
VPS52-217ENST00000478934 TMEM57Q8N5G2 664 aa13.8□□□□□ -0.2
VPS52-217ENST00000478934 RIMS2Q9UQ26 1411 aa13.8□□□□□ -0.2
VPS52-217ENST00000478934 RRS1Q15050 365 aaKnown RBP13.8□□□□□ -0.2
VPS52-217ENST00000478934 RSPH6AQ9H0K4 717 aa13.79□□□□□ -0.2
VPS52-217ENST00000478934 SLKQ9H2G2 1235 aaPredicted RBP13.79□□□□□ -0.2
VPS52-217ENST00000478934 RWDD1Q9H446 243 aaPredicted RBP13.79□□□□□ -0.2
VPS52-217ENST00000478934 PNPLA6Q8IY17 1366 aa13.79□□□□□ -0.2
VPS52-217ENST00000478934 ATF7IPQ6VMQ6 1270 aa13.78□□□□□ -0.2
VPS52-217ENST00000478934 BRPF3Q9ULD4 1205 aa13.78□□□□□ -0.2
VPS52-217ENST00000478934 VIRMAQ69YN4 1812 aaKnown RBP13.78□□□□□ -0.2
VPS52-217ENST00000478934 CLTCQ00610 1675 aaKnown RBP13.78□□□□□ -0.2
VPS52-217ENST00000478934 TSPYL6Q8N831 410 aa13.77□□□□□ -0.2
VPS52-217ENST00000478934 SPRYD3Q8NCJ5 442 aa13.77□□□□□ -0.2
VPS52-217ENST00000478934 WASLO00401 505 aaPredicted RBP13.77□□□□□ -0.21
VPS52-217ENST00000478934 GSE1Q14687 1217 aa13.77□□□□□ -0.21
VPS52-217ENST00000478934 FAM83GA6ND36 823 aa13.76□□□□□ -0.21
VPS52-217ENST00000478934 FCHSD2O94868 740 aa13.76□□□□□ -0.21
VPS52-217ENST00000478934 PLPPR3Q6T4P5 718 aa13.76□□□□□ -0.21
VPS52-217ENST00000478934 DIP2BQ9P265 1576 aa13.76□□□□□ -0.21
VPS52-217ENST00000478934 DCTN1Q14203 1278 aa13.76□□□□□ -0.21
VPS52-217ENST00000478934 NUDT16Q96DE0 195 aaKnown RBP13.76□□□□□ -0.21
VPS52-217ENST00000478934 NCBP3Q53F19 620 aaKnown RBP13.75□□□□□ -0.21
VPS52-217ENST00000478934 LRRC7Q96NW7 1537 aa13.75□□□□□ -0.21
VPS52-217ENST00000478934 PPIP5K1Q6PFW1 1433 aa13.75□□□□□ -0.21
VPS52-217ENST00000478934 C1orf115Q9H7X2 142 aa13.75□□□□□ -0.21
VPS52-217ENST00000478934 RIMBP3CA6NJZ7 1639 aa13.74□□□□□ -0.21
VPS52-217ENST00000478934 RIMBP3BA6NNM3 1639 aa13.74□□□□□ -0.21
VPS52-217ENST00000478934 RIMBP3Q9UFD9 1639 aa13.74□□□□□ -0.21
VPS52-217ENST00000478934 MED14O60244 1454 aa13.74□□□□□ -0.21
VPS52-217ENST00000478934 IL13P35225 146 aa13.74□□□□□ -0.21
VPS52-217ENST00000478934 SOX12O15370 315 aa13.73□□□□□ -0.21
VPS52-217ENST00000478934 ZMYM3Q14202 1370 aa13.73□□□□□ -0.21
VPS52-217ENST00000478934 IL16Q14005 1332 aa13.73□□□□□ -0.21
VPS52-217ENST00000478934 CT47B1P0C2W7 299 aaPredicted RBP13.73□□□□□ -0.21
VPS52-217ENST00000478934 ZBTB40Q9NUA8 1239 aa13.73□□□□□ -0.21
VPS52-217ENST00000478934 DDX19BQ9UMR2 479 aa13.73□□□□□ -0.21
VPS52-217ENST00000478934 PRR36Q9H6K5 1346 aa13.72□□□□□ -0.21
VPS52-217ENST00000478934 NFE2L2Q16236 605 aa13.72□□□□□ -0.21
VPS52-217ENST00000478934 ESF1Q9H501 851 aaKnown RBP13.72□□□□□ -0.21
VPS52-217ENST00000478934 FAM135BQ49AJ0 1406 aa13.72□□□□□ -0.21
VPS52-217ENST00000478934 CPS1P31327 1500 aa13.71□□□□□ -0.21
VPS52-217ENST00000478934 AAMPQ13685 434 aa13.71□□□□□ -0.21
VPS52-217ENST00000478934 AEBP1Q8IUX7 1158 aa13.71□□□□□ -0.21
VPS52-217ENST00000478934 VAMP4O75379 141 aa13.71□□□□□ -0.22
VPS52-217ENST00000478934 MFAP1P55081 439 aaKnown RBP13.71□□□□□ -0.22
VPS52-217ENST00000478934 MBIPQ9NS73 344 aa13.71□□□□□ -0.22
VPS52-217ENST00000478934 ANKRD26Q9UPS8 1709 aa13.71□□□□□ -0.22
VPS52-217ENST00000478934 CPSF1Q10570 1443 aaKnown RBP13.7□□□□□ -0.22
VPS52-217ENST00000478934 CEBPAP49715 358 aaPredicted RBP13.7□□□□□ -0.22
VPS52-217ENST00000478934 C8orf58Q8NAV2 365 aa13.7□□□□□ -0.22
VPS52-217ENST00000478934 LNPKQ9C0E8 428 aa13.7□□□□□ -0.22
VPS52-217ENST00000478934 COG3Q96JB2 828 aa13.7□□□□□ -0.22
VPS52-217ENST00000478934 TBC1D32Q96NH3 1257 aa13.7□□□□□ -0.22
VPS52-217ENST00000478934 ARXQ96QS3 562 aa13.7□□□□□ -0.22
VPS52-217ENST00000478934 CCDC61Q9Y6R9 512 aa13.7□□□□□ -0.22
VPS52-217ENST00000478934 SPATA31D1Q6ZQQ2 1576 aa13.7□□□□□ -0.22
VPS52-217ENST00000478934 HDAC1Q13547 482 aaPredicted RBP13.69□□□□□ -0.22
VPS52-217ENST00000478934 KRT24Q2M2I5 525 aa13.69□□□□□ -0.22
VPS52-217ENST00000478934 PNNQ9H307 717 aaKnown RBP13.69□□□□□ -0.22
VPS52-217ENST00000478934 KIF20BQ96Q89 1820 aa13.69□□□□□ -0.22
VPS52-217ENST00000478934 MAP2P11137 1827 aaKnown RBP13.69□□□□□ -0.22
VPS52-217ENST00000478934 NRXN3Q9Y4C0 1643 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms