RNA–Protein interactions for RNA: ENST00000475993.1

ABCF1-205, Transcript of ATP binding cassette subfamily F member 1, humanhuman

TSL 1 (best)

Gene ABCF1, Length 2,860 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-205ENST00000475993 IQSEC2Q5JU85 1478 aa13.06□□□□□ -0.32
ABCF1-205ENST00000475993 POLR3AO14802 1390 aaPredicted RBP13.06□□□□□ -0.32
ABCF1-205ENST00000475993 IGSF3O75054 1194 aa13.06□□□□□ -0.32
ABCF1-205ENST00000475993 WDR63Q8IWG1 891 aa13.06□□□□□ -0.32
ABCF1-205ENST00000475993 RNF216Q9NWF9 866 aaPredicted RBP13.06□□□□□ -0.32
ABCF1-205ENST00000475993 TAF3Q5VWG9 929 aa13.05□□□□□ -0.32
ABCF1-205ENST00000475993 FOXD4L1Q9NU39 408 aa13.05□□□□□ -0.32
ABCF1-205ENST00000475993 ARHGEF5Q12774 1597 aa13.05□□□□□ -0.32
ABCF1-205ENST00000475993 GAS2L2Q8NHY3 880 aa13.05□□□□□ -0.32
ABCF1-205ENST00000475993 CAVIN1Q6NZI2 390 aaKnown RBP13.04□□□□□ -0.32
ABCF1-205ENST00000475993 CCDC39Q9UFE4 941 aa13.04□□□□□ -0.32
ABCF1-205ENST00000475993 ZKSCAN2Q63HK3 967 aa13.04□□□□□ -0.32
ABCF1-205ENST00000475993 DZIP1LQ8IYY4 767 aaKnown RBP13.04□□□□□ -0.32
ABCF1-205ENST00000475993 PRIM1P49642 420 aaKnown RBP13.03□□□□□ -0.32
ABCF1-205ENST00000475993 MYRIPQ8NFW9 859 aa13.03□□□□□ -0.32
ABCF1-205ENST00000475993 LMBRD1Q9NUN5 540 aa13.03□□□□□ -0.32
ABCF1-205ENST00000475993 ATP10AO60312 1499 aa13.03□□□□□ -0.32
ABCF1-205ENST00000475993 UNC13BO14795 1591 aa13.03□□□□□ -0.32
ABCF1-205ENST00000475993 KCNG1Q9UIX4 513 aa13.03□□□□□ -0.32
ABCF1-205ENST00000475993 SHPRHQ149N8 1683 aa13.02□□□□□ -0.32
ABCF1-205ENST00000475993 IRX5P78411 483 aaPredicted RBP13.02□□□□□ -0.33
ABCF1-205ENST00000475993 RUNDC1Q96C34 613 aa13.02□□□□□ -0.33
ABCF1-205ENST00000475993 CYP2E1P05181 493 aaPredicted RBP13.01□□□□□ -0.33
ABCF1-205ENST00000475993 NUCB1Q02818 461 aa13.01□□□□□ -0.33
ABCF1-205ENST00000475993 CCDC27Q2M243 656 aa13.01□□□□□ -0.33
ABCF1-205ENST00000475993 SCAF11Q99590 1463 aaKnown RBP13.01□□□□□ -0.33
ABCF1-205ENST00000475993 MADDQ8WXG6 1647 aa13.01□□□□□ -0.33
ABCF1-205ENST00000475993 BMP2KLQ5H9B9 411 aa13.01□□□□□ -0.33
ABCF1-205ENST00000475993 MCTP1Q6DN14 999 aa13.01□□□□□ -0.33
ABCF1-205ENST00000475993 CNPY4Q8N129 248 aa13.01□□□□□ -0.33
ABCF1-205ENST00000475993 ZNF710Q8N1W2 664 aa13.01□□□□□ -0.33
ABCF1-205ENST00000475993 GTF2F1P35269 517 aaKnown RBP eCLIP13□□□□□ -0.33
ABCF1-205ENST00000475993 NEUROD2Q15784 382 aa13□□□□□ -0.33
ABCF1-205ENST00000475993 TCP11L2Q8N4U5 519 aa13□□□□□ -0.33
ABCF1-205ENST00000475993 RRP7AQ9Y3A4 280 aaKnown RBP13□□□□□ -0.33
ABCF1-205ENST00000475993 KCNJ4P48050 445 aa13□□□□□ -0.33
ABCF1-205ENST00000475993 DDX19BQ9UMR2 479 aa13□□□□□ -0.33
ABCF1-205ENST00000475993 CEP152O94986 1710 aa13□□□□□ -0.33
ABCF1-205ENST00000475993 KDM5AP29375 1690 aaKnown RBP13□□□□□ -0.33
ABCF1-205ENST00000475993 AK9Q5TCS8 1911 aa12.99□□□□□ -0.33
ABCF1-205ENST00000475993 RBM42Q9BTD8 480 aaKnown RBP12.99□□□□□ -0.33
ABCF1-205ENST00000475993 PLB1Q6P1J6 1458 aa12.99□□□□□ -0.33
ABCF1-205ENST00000475993 VGFO15240 615 aaPredicted RBP12.99□□□□□ -0.33
ABCF1-205ENST00000475993 NUCB2P80303 420 aa12.99□□□□□ -0.33
ABCF1-205ENST00000475993 PRIMPOLQ96LW4 560 aa12.99□□□□□ -0.33
ABCF1-205ENST00000475993 IQGAP3Q86VI3 1631 aa12.99□□□□□ -0.33
ABCF1-205ENST00000475993 CFAP74Q9C0B2 1584 aa12.99□□□□□ -0.33
ABCF1-205ENST00000475993 MAGI1Q96QZ7 1491 aaPredicted RBP12.99□□□□□ -0.33
ABCF1-205ENST00000475993 KIF16BQ96L93 1317 aa12.99□□□□□ -0.33
ABCF1-205ENST00000475993 LRSAM1Q6UWE0 723 aa12.99□□□□□ -0.33
ABCF1-205ENST00000475993 ZBTB9Q96C00 473 aa12.99□□□□□ -0.33
ABCF1-205ENST00000475993 BCCIPQ9P287 314 aaKnown RBP eCLIP12.99□□□□□ -0.33
ABCF1-205ENST00000475993 CT47B1P0C2W7 299 aaPredicted RBP12.98□□□□□ -0.33
ABCF1-205ENST00000475993 TRIM27P14373 513 aa12.98□□□□□ -0.33
ABCF1-205ENST00000475993 HNRNPMP52272 730 aaKnown RBP eCLIP12.98□□□□□ -0.33
ABCF1-205ENST00000475993 KIAA2012Q0VF49 1180 aa12.98□□□□□ -0.33
ABCF1-205ENST00000475993 ATP2B3Q16720 1220 aa12.98□□□□□ -0.33
ABCF1-205ENST00000475993 GPT2Q8TD30 523 aa12.98□□□□□ -0.33
ABCF1-205ENST00000475993 CHMP4CQ96CF2 233 aa12.98□□□□□ -0.33
ABCF1-205ENST00000475993 CARD14Q9BXL6 1004 aa12.98□□□□□ -0.33
ABCF1-205ENST00000475993 HMGN5P82970 282 aaKnown RBP12.97□□□□□ -0.33
ABCF1-205ENST00000475993 ZNF771Q7L3S4 317 aaPredicted RBP12.97□□□□□ -0.33
ABCF1-205ENST00000475993 ZBTB40Q9NUA8 1239 aa12.97□□□□□ -0.33
ABCF1-205ENST00000475993 CHD1LQ86WJ1 897 aa12.96□□□□□ -0.33
ABCF1-205ENST00000475993 JARID2Q92833 1246 aaPredicted RBP12.96□□□□□ -0.33
ABCF1-205ENST00000475993 HDAC5Q9UQL6 1122 aa12.96□□□□□ -0.33
ABCF1-205ENST00000475993 SPDYE4A6NLX3 237 aa12.96□□□□□ -0.34
ABCF1-205ENST00000475993 ITPRIPQ8IWB1 547 aa12.96□□□□□ -0.34
ABCF1-205ENST00000475993 LNPKQ9C0E8 428 aa12.96□□□□□ -0.34
ABCF1-205ENST00000475993 RBM27Q9P2N5 1060 aaKnown RBP12.96□□□□□ -0.34
ABCF1-205ENST00000475993 TBC1D9Q6ZT07 1266 aa12.95□□□□□ -0.34
ABCF1-205ENST00000475993 TSC1Q92574 1164 aa12.95□□□□□ -0.34
ABCF1-205ENST00000475993 SLC52A1Q9NWF4 448 aa12.95□□□□□ -0.34
ABCF1-205ENST00000475993 TTC37Q6PGP7 1564 aa12.95□□□□□ -0.34
ABCF1-205ENST00000475993 DNAJC2Q99543 621 aaKnown RBP12.95□□□□□ -0.34
ABCF1-205ENST00000475993 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.95□□□□□ -0.34
ABCF1-205ENST00000475993 APPP05067 770 aa12.95□□□□□ -0.34
ABCF1-205ENST00000475993 ATF7IPQ6VMQ6 1270 aa12.95□□□□□ -0.34
ABCF1-205ENST00000475993 TMEM63CQ9P1W3 806 aa12.95□□□□□ -0.34
ABCF1-205ENST00000475993 DNAJC5BQ9UF47 199 aa12.95□□□□□ -0.34
ABCF1-205ENST00000475993 DUOX2Q9NRD8 1548 aa12.94□□□□□ -0.34
ABCF1-205ENST00000475993 PRPF40AO75400 957 aaKnown RBP12.94□□□□□ -0.34
ABCF1-205ENST00000475993 SMC4Q9NTJ3 1288 aa12.94□□□□□ -0.34
ABCF1-205ENST00000475993 SYCE3A1L190 88 aa12.93□□□□□ -0.34
ABCF1-205ENST00000475993 ZBTB7CA1YPR0 619 aa12.93□□□□□ -0.34
ABCF1-205ENST00000475993 MYCNP04198 464 aaPredicted RBP12.93□□□□□ -0.34
ABCF1-205ENST00000475993 PKP1Q13835 747 aa12.93□□□□□ -0.34
ABCF1-205ENST00000475993 PIBF1Q8WXW3 757 aa12.93□□□□□ -0.34
ABCF1-205ENST00000475993 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.92□□□□□ -0.34
ABCF1-205ENST00000475993 RABEP1Q15276 862 aa12.92□□□□□ -0.34
ABCF1-205ENST00000475993 CWC22Q9HCG8 908 aaKnown RBP12.92□□□□□ -0.34
ABCF1-205ENST00000475993 SPHKAPQ2M3C7 1700 aa12.92□□□□□ -0.34
ABCF1-205ENST00000475993 ERVK-7P63135 1459 aa12.92□□□□□ -0.34
ABCF1-205ENST00000475993 PLEKHD1A6NEE1 506 aa12.92□□□□□ -0.34
ABCF1-205ENST00000475993 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.92□□□□□ -0.34
ABCF1-205ENST00000475993 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.92□□□□□ -0.341e-7■■■□□ 17.6
ABCF1-205ENST00000475993 TMEM57Q8N5G2 664 aa12.91□□□□□ -0.34
ABCF1-205ENST00000475993 KIF3AQ9Y496 699 aa12.91□□□□□ -0.34
ABCF1-205ENST00000475993 SAMD9LQ8IVG5 1584 aa12.91□□□□□ -0.34
ABCF1-205ENST00000475993 SSH1Q8WYL5 1049 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms