RNA–Protein interactions for RNA: ENST00000475993.1

ABCF1-205, Transcript of ATP binding cassette subfamily F member 1, humanhuman

TSL 1 (best)

Gene ABCF1, Length 2,860 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-205ENST00000475993 NISCHQ9Y2I1 1504 aa19.54■□□□□ 0.72
ABCF1-205ENST00000475993 PELP1Q8IZL8 1130 aaKnown RBP18.2■□□□□ 0.5
ABCF1-205ENST00000475993 HRCP23327 699 aa17.93■□□□□ 0.46
ABCF1-205ENST00000475993 MYT1Q01538 1121 aa17.73■□□□□ 0.43
ABCF1-205ENST00000475993 PPARGC1BQ86YN6 1023 aaKnown RBP17.43■□□□□ 0.38
ABCF1-205ENST00000475993 PCGF6Q9BYE7 350 aa17.37■□□□□ 0.37
ABCF1-205ENST00000475993 MYO15BQ96JP2 1530 aa17.32■□□□□ 0.36
ABCF1-205ENST00000475993 SUPT5HO00267 1087 aaKnown RBP17.23■□□□□ 0.35
ABCF1-205ENST00000475993 SHROOM4Q9ULL8 1493 aa17.22■□□□□ 0.35
ABCF1-205ENST00000475993 CHIC1Q5VXU3 224 aa17.15■□□□□ 0.34
ABCF1-205ENST00000475993 SCAF1Q9H7N4 1312 aaKnown RBP17.13■□□□□ 0.33
ABCF1-205ENST00000475993 DCAF1Q9Y4B6 1507 aa17.09■□□□□ 0.33
ABCF1-205ENST00000475993 CCDC180Q9P1Z9 1646 aa16.91■□□□□ 0.3
ABCF1-205ENST00000475993 TRIM26Q12899 539 aaPredicted RBP16.87■□□□□ 0.29
ABCF1-205ENST00000475993 TTBK1Q5TCY1 1321 aaPredicted RBP16.86■□□□□ 0.29
ABCF1-205ENST00000475993 ZEB1P37275 1124 aaPredicted RBP16.83■□□□□ 0.28
ABCF1-205ENST00000475993 ZCCHC6Q5VYS8 1495 aaKnown RBP16.68■□□□□ 0.26
ABCF1-205ENST00000475993 LOC105371045A0A1W2PR82 267 aa16.68■□□□□ 0.26
ABCF1-205ENST00000475993 PRKCSHP14314 528 aaPredicted RBP16.63■□□□□ 0.25
ABCF1-205ENST00000475993 BCL11AQ9H165 835 aa16.6■□□□□ 0.25
ABCF1-205ENST00000475993 ACIN1Q9UKV3 1341 aaKnown RBP16.57■□□□□ 0.24
ABCF1-205ENST00000475993 NEUROD1Q13562 356 aa16.48■□□□□ 0.23
ABCF1-205ENST00000475993 FAM9AQ8IZU1 332 aaPredicted RBP16.44■□□□□ 0.22
ABCF1-205ENST00000475993 GTF3C3Q9Y5Q9 886 aa16.39■□□□□ 0.21
ABCF1-205ENST00000475993 CENPBP07199 599 aaPredicted RBP16.32■□□□□ 0.2
ABCF1-205ENST00000475993 DIEXFQ68CQ4 756 aaKnown RBP16.16■□□□□ 0.18
ABCF1-205ENST00000475993 ERICH6Q7L0X2 663 aa16.16■□□□□ 0.18
ABCF1-205ENST00000475993 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.04■□□□□ 0.16
ABCF1-205ENST00000475993 CCER1Q8TC90 406 aaPredicted RBP16.03■□□□□ 0.16
ABCF1-205ENST00000475993 APLP2Q06481 763 aa16.02■□□□□ 0.16
ABCF1-205ENST00000475993 TRIM41Q8WV44 630 aa15.99■□□□□ 0.15
ABCF1-205ENST00000475993 ANP32EQ9BTT0 268 aa15.97■□□□□ 0.15
ABCF1-205ENST00000475993 DCAF8L2P0C7V8 631 aa15.97■□□□□ 0.15
ABCF1-205ENST00000475993 ABCC9O60706 1549 aa15.89■□□□□ 0.13
ABCF1-205ENST00000475993 CSRNP3Q8WYN3 585 aa15.88■□□□□ 0.13
ABCF1-205ENST00000475993 ZNF316A6NFI3 1004 aaPredicted RBP15.84■□□□□ 0.13
ABCF1-205ENST00000475993 YTHDC1Q96MU7 727 aaKnown RBP15.81■□□□□ 0.12
ABCF1-205ENST00000475993 RSF1Q96T23 1441 aaPredicted RBP15.77■□□□□ 0.12
ABCF1-205ENST00000475993 EHMT2Q96KQ7 1210 aa15.74■□□□□ 0.11
ABCF1-205ENST00000475993 RB1CC1Q8TDY2 1594 aa15.73■□□□□ 0.11
ABCF1-205ENST00000475993 MIER1Q8N108 512 aa15.73■□□□□ 0.11
ABCF1-205ENST00000475993 CLSPNQ9HAW4 1339 aa15.68■□□□□ 0.1
ABCF1-205ENST00000475993 WRNQ14191 1432 aaPredicted RBP eCLIP15.65■□□□□ 0.1
ABCF1-205ENST00000475993 SUPT16HQ9Y5B9 1047 aaKnown RBP15.61■□□□□ 0.09
ABCF1-205ENST00000475993 TSHZ2Q9NRE2 1034 aa15.59■□□□□ 0.09
ABCF1-205ENST00000475993 ANO8Q9HCE9 1232 aaPredicted RBP15.53■□□□□ 0.08
ABCF1-205ENST00000475993 CEP162Q5TB80 1403 aa15.44■□□□□ 0.06
ABCF1-205ENST00000475993 SCRIBQ14160 1630 aa15.37■□□□□ 0.05
ABCF1-205ENST00000475993 EIF4G1Q04637 1599 aaKnown RBP15.35■□□□□ 0.05
ABCF1-205ENST00000475993 TNIKQ9UKE5 1360 aa15.35■□□□□ 0.05
ABCF1-205ENST00000475993 SLC24A1O60721 1099 aa15.34■□□□□ 0.05
ABCF1-205ENST00000475993 NACADO15069 1562 aa15.32■□□□□ 0.04
ABCF1-205ENST00000475993 MROH2BQ7Z745 1585 aa15.25■□□□□ 0.03
ABCF1-205ENST00000475993 HNRNPUL2Q1KMD3 747 aaKnown RBP15.24■□□□□ 0.03
ABCF1-205ENST00000475993 CECR2Q9BXF3 1484 aa15.22■□□□□ 0.03
ABCF1-205ENST00000475993 SALL2Q9Y467 1007 aaPredicted RBP15.22■□□□□ 0.03
ABCF1-205ENST00000475993 EIF5BO60841 1220 aaKnown RBP15.22■□□□□ 0.03
ABCF1-205ENST00000475993 UBE2Q2Q8WVN8 375 aa15.22■□□□□ 0.03
ABCF1-205ENST00000475993 CCDC136Q96JN2 1154 aa15.22■□□□□ 0.03
ABCF1-205ENST00000475993 CCDC88BA6NC98 1476 aa15.21■□□□□ 0.02
ABCF1-205ENST00000475993 WIZO95785 1651 aa15.2■□□□□ 0.02
ABCF1-205ENST00000475993 RBM19Q9Y4C8 960 aaKnown RBP15.19■□□□□ 0.02
ABCF1-205ENST00000475993 ABCC8Q09428 1581 aa15.18■□□□□ 0.02
ABCF1-205ENST00000475993 EEA1Q15075 1411 aa15.17■□□□□ 0.02
ABCF1-205ENST00000475993 BAZ1AQ9NRL2 1556 aaPredicted RBP15.16■□□□□ 0.02
ABCF1-205ENST00000475993 SOGA1O94964 1423 aa15.15■□□□□ 0.02
ABCF1-205ENST00000475993 BCANQ96GW7 911 aa15.12■□□□□ 0.01
ABCF1-205ENST00000475993 GOLGA3Q08378 1498 aa15.11■□□□□ 0.01
ABCF1-205ENST00000475993 UBTFP17480 764 aaKnown RBP15.1■□□□□ 0.01
ABCF1-205ENST00000475993 FKBP8Q14318 412 aa15.1■□□□□ 0.01
ABCF1-205ENST00000475993 DHX57Q6P158 1386 aaKnown RBP15.09■□□□□ 0.01
ABCF1-205ENST00000475993 MSH5O43196 834 aa15.08■□□□□ 0.01
ABCF1-205ENST00000475993 RUSC2Q8N2Y8 1516 aa15.05■□□□□ -0
ABCF1-205ENST00000475993 KCNH8Q96L42 1107 aa15.05■□□□□ -0
ABCF1-205ENST00000475993 DEKP35659 375 aaKnown RBP15.04■□□□□ -0
ABCF1-205ENST00000475993 PLEKHG5O94827 1062 aa15.02□□□□□ -0.01
ABCF1-205ENST00000475993 VPS8Q8N3P4 1428 aa15.01□□□□□ -0.01
ABCF1-205ENST00000475993 FANCIQ9NVI1 1328 aa15□□□□□ -0.01
ABCF1-205ENST00000475993 CLIP1P30622 1438 aa15□□□□□ -0.01
ABCF1-205ENST00000475993 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.99□□□□□ -0.01
ABCF1-205ENST00000475993 NEFLP07196 543 aa14.97□□□□□ -0.01
ABCF1-205ENST00000475993 MYT1LQ9UL68 1186 aa14.96□□□□□ -0.01
ABCF1-205ENST00000475993 TOP2AP11388 1531 aaKnown RBP14.95□□□□□ -0.02
ABCF1-205ENST00000475993 KIF21BO75037 1637 aa14.94□□□□□ -0.02
ABCF1-205ENST00000475993 CEP164Q9UPV0 1460 aa14.94□□□□□ -0.02
ABCF1-205ENST00000475993 DAXXQ9UER7 740 aaPredicted RBP14.93□□□□□ -0.02
ABCF1-205ENST00000475993 PKNOX2Q96KN3 472 aa14.92□□□□□ -0.02
ABCF1-205ENST00000475993 ITGAEP38570 1179 aa14.92□□□□□ -0.02
ABCF1-205ENST00000475993 ERICH6BQ5W0A0 696 aa14.91□□□□□ -0.02
ABCF1-205ENST00000475993 SMARCA2P51531 1590 aa14.91□□□□□ -0.02
ABCF1-205ENST00000475993 CUX2O14529 1486 aa14.87□□□□□ -0.03
ABCF1-205ENST00000475993 BAZ1BQ9UIG0 1483 aaKnown RBP14.86□□□□□ -0.03
ABCF1-205ENST00000475993 RTN4Q9NQC3 1192 aaKnown RBP14.84□□□□□ -0.03
ABCF1-205ENST00000475993 PODXL2Q9NZ53 605 aa14.82□□□□□ -0.04
ABCF1-205ENST00000475993 CCER2I3L3R5 266 aa14.81□□□□□ -0.04
ABCF1-205ENST00000475993 CDK11AQ9UQ88 783 aaPredicted RBP14.8□□□□□ -0.04
ABCF1-205ENST00000475993 RRBP1Q9P2E9 1410 aaKnown RBP14.8□□□□□ -0.04
ABCF1-205ENST00000475993 PPP1R15AO75807 674 aaPredicted RBP14.79□□□□□ -0.04
ABCF1-205ENST00000475993 DDX10Q13206 875 aaKnown RBP14.79□□□□□ -0.04
ABCF1-205ENST00000475993 TRIM52Q96A61 297 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms