RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 PHACTR3Q96KR7 559 aa22.82■■□□□ 1.24
MCF2L-221ENST00000469415 NOB1Q9ULX3 412 aaKnown RBP22.82■■□□□ 1.24
MCF2L-221ENST00000469415 NEURL4Q96JN8 1562 aa22.82■■□□□ 1.24
MCF2L-221ENST00000469415 CFAP74Q9C0B2 1584 aa22.82■■□□□ 1.24
MCF2L-221ENST00000469415 PIK3C2BO00750 1634 aa22.82■■□□□ 1.24
MCF2L-221ENST00000469415 PLEKHF1Q96S99 279 aa22.82■■□□□ 1.24
MCF2L-221ENST00000469415 PHF23Q9BUL5 403 aaPredicted RBP22.82■■□□□ 1.24
MCF2L-221ENST00000469415 ABCC11Q96J66 1382 aa22.81■■□□□ 1.24
MCF2L-221ENST00000469415 SPRYD3Q8NCJ5 442 aa22.81■■□□□ 1.24
MCF2L-221ENST00000469415 TRIM27P14373 513 aa22.8■■□□□ 1.24
MCF2L-221ENST00000469415 ATAD2Q6PL18 1390 aa22.8■■□□□ 1.24
MCF2L-221ENST00000469415 POLKQ9UBT6 870 aa22.79■■□□□ 1.24
MCF2L-221ENST00000469415 MYO3AQ8NEV4 1616 aa22.79■■□□□ 1.24
MCF2L-221ENST00000469415 MYO5BQ9ULV0 1848 aa22.78■■□□□ 1.24
MCF2L-221ENST00000469415 CEBPAP49715 358 aaPredicted RBP22.78■■□□□ 1.24
MCF2L-221ENST00000469415 DCTN1Q14203 1278 aa22.78■■□□□ 1.24
MCF2L-221ENST00000469415 SLKQ9H2G2 1235 aaPredicted RBP22.77■■□□□ 1.24
MCF2L-221ENST00000469415 MVPQ14764 893 aaKnown RBP22.77■■□□□ 1.24
MCF2L-221ENST00000469415 PMFBP1Q8TBY8 1022 aa22.76■■□□□ 1.23
MCF2L-221ENST00000469415 SHPRHQ149N8 1683 aa22.75■■□□□ 1.23
MCF2L-221ENST00000469415 PTPRMP28827 1452 aa22.75■■□□□ 1.23
MCF2L-221ENST00000469415 FAM83GA6ND36 823 aa22.75■■□□□ 1.23
MCF2L-221ENST00000469415 CCDC27Q2M243 656 aa22.75■■□□□ 1.23
MCF2L-221ENST00000469415 TMEM57Q8N5G2 664 aa22.75■■□□□ 1.23
MCF2L-221ENST00000469415 C1orf115Q9H7X2 142 aa22.75■■□□□ 1.23
MCF2L-221ENST00000469415 ARHGAP31Q2M1Z3 1444 aa22.75■■□□□ 1.23
MCF2L-221ENST00000469415 ARHGEF28Q8N1W1 1705 aaKnown RBP22.75■■□□□ 1.23
MCF2L-221ENST00000469415 SLC26A8Q96RN1 970 aa22.74■■□□□ 1.23
MCF2L-221ENST00000469415 RWDD1Q9H446 243 aaPredicted RBP22.74■■□□□ 1.23
MCF2L-221ENST00000469415 PUS7Q96PZ0 661 aaKnown RBP22.74■■□□□ 1.23
MCF2L-221ENST00000469415 NSD2O96028 1365 aa22.73■■□□□ 1.23
MCF2L-221ENST00000469415 NUDT16Q96DE0 195 aaKnown RBP22.73■■□□□ 1.23
MCF2L-221ENST00000469415 METP08581 1390 aa22.73■■□□□ 1.23
MCF2L-221ENST00000469415 RTN4Q9NQC3 1192 aaKnown RBP22.73■■□□□ 1.23
MCF2L-221ENST00000469415 IQSEC2Q5JU85 1478 aa22.72■■□□□ 1.23
MCF2L-221ENST00000469415 PLEKHG5O94827 1062 aa22.72■■□□□ 1.23
MCF2L-221ENST00000469415 NFKBIBQ15653 356 aa22.72■■□□□ 1.23
MCF2L-221ENST00000469415 TSPYL6Q8N831 410 aa22.72■■□□□ 1.23
MCF2L-221ENST00000469415 RIMS2Q9UQ26 1411 aa22.72■■□□□ 1.23
MCF2L-221ENST00000469415 WASLO00401 505 aaPredicted RBP22.71■■□□□ 1.23
MCF2L-221ENST00000469415 ATF7IPQ6VMQ6 1270 aa22.71■■□□□ 1.23
MCF2L-221ENST00000469415 ZC3H13Q5T200 1668 aaKnown RBP22.7■■□□□ 1.22
MCF2L-221ENST00000469415 RICTORQ6R327 1708 aa22.7■■□□□ 1.22
MCF2L-221ENST00000469415 CD163L1Q9NR16 1453 aa22.69■■□□□ 1.22
MCF2L-221ENST00000469415 FRAT2O75474 233 aaPredicted RBP22.68■■□□□ 1.22
MCF2L-221ENST00000469415 MFAP1P55081 439 aaKnown RBP22.68■■□□□ 1.22
MCF2L-221ENST00000469415 COG3Q96JB2 828 aa22.68■■□□□ 1.22
MCF2L-221ENST00000469415 RSPH6AQ9H0K4 717 aa22.67■■□□□ 1.22
MCF2L-221ENST00000469415 ALKQ9UM73 1620 aa22.67■■□□□ 1.22
MCF2L-221ENST00000469415 AEBP1Q8IUX7 1158 aa22.66■■□□□ 1.22
MCF2L-221ENST00000469415 LNPKQ9C0E8 428 aa22.66■■□□□ 1.22
MCF2L-221ENST00000469415 TMEM131LA2VDJ0 1609 aa22.66■■□□□ 1.22
MCF2L-221ENST00000469415 FCHSD2O94868 740 aa22.66■■□□□ 1.22
MCF2L-221ENST00000469415 USP19O94966 1318 aa22.66■■□□□ 1.22
MCF2L-221ENST00000469415 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.66■■□□□ 1.22
MCF2L-221ENST00000469415 ZFYVE9O95405 1425 aa22.65■■□□□ 1.22
MCF2L-221ENST00000469415 PREX1Q8TCU6 1659 aa22.65■■□□□ 1.22
MCF2L-221ENST00000469415 KRT24Q2M2I5 525 aa22.64■■□□□ 1.22
MCF2L-221ENST00000469415 PPIP5K1Q6PFW1 1433 aa22.64■■□□□ 1.21
MCF2L-221ENST00000469415 CCDC61Q9Y6R9 512 aa22.63■■□□□ 1.21
MCF2L-221ENST00000469415 ZMYM3Q14202 1370 aa22.63■■□□□ 1.21
MCF2L-221ENST00000469415 UPF2Q9HAU5 1272 aaKnown RBP22.63■■□□□ 1.21
MCF2L-221ENST00000469415 A2ML1A8K2U0 1454 aa22.62■■□□□ 1.21
MCF2L-221ENST00000469415 DDX19BQ9UMR2 479 aa22.62■■□□□ 1.21
MCF2L-221ENST00000469415 NINLQ9Y2I6 1382 aa22.62■■□□□ 1.21
MCF2L-221ENST00000469415 ARXQ96QS3 562 aa22.61■■□□□ 1.21
MCF2L-221ENST00000469415 ARHGEF40Q8TER5 1519 aa22.61■■□□□ 1.21
MCF2L-221ENST00000469415 NUTM2GQ5VZR2 741 aa22.61■■□□□ 1.21
MCF2L-221ENST00000469415 NFE2L2Q16236 605 aa22.6■■□□□ 1.21
MCF2L-221ENST00000469415 SULT6B1Q6IMI4 303 aa22.6■■□□□ 1.21
MCF2L-221ENST00000469415 PNNQ9H307 717 aaKnown RBP22.6■■□□□ 1.21
MCF2L-221ENST00000469415 MBIPQ9NS73 344 aa22.6■■□□□ 1.21
MCF2L-221ENST00000469415 MIS18AQ9NYP9 233 aa22.6■■□□□ 1.21
MCF2L-221ENST00000469415 NLRP1Q9C000 1473 aa22.59■■□□□ 1.21
MCF2L-221ENST00000469415 C8orf58Q8NAV2 365 aa22.59■■□□□ 1.21
MCF2L-221ENST00000469415 PRR36Q9H6K5 1346 aa22.59■■□□□ 1.21
MCF2L-221ENST00000469415 APBB1O00213 710 aa22.58■■□□□ 1.21
MCF2L-221ENST00000469415 IPO8O15397 1037 aaKnown RBP22.58■■□□□ 1.21
MCF2L-221ENST00000469415 IL13P35225 146 aa22.58■■□□□ 1.21
MCF2L-221ENST00000469415 RBM33Q96EV2 1170 aaKnown RBP22.58■■□□□ 1.21
MCF2L-221ENST00000469415 MCM10Q7L590 875 aa22.58■■□□□ 1.21
MCF2L-221ENST00000469415 LTKP29376 864 aa22.57■■□□□ 1.2
MCF2L-221ENST00000469415 HSP90AB2PQ58FF8 381 aa22.57■■□□□ 1.2
MCF2L-221ENST00000469415 COL3A1P02461 1466 aaPredicted RBP22.56■■□□□ 1.2
MCF2L-221ENST00000469415 ANKRD45Q5TZF3 282 aa22.56■■□□□ 1.2
MCF2L-221ENST00000469415 CLTCQ00610 1675 aaKnown RBP22.56■■□□□ 1.2
MCF2L-221ENST00000469415 TWISTNBQ3B726 338 aaPredicted RBP22.55■■□□□ 1.2
MCF2L-221ENST00000469415 VAMP4O75379 141 aa22.55■■□□□ 1.2
MCF2L-221ENST00000469415 IL27Q8NEV9 243 aa22.55■■□□□ 1.2
MCF2L-221ENST00000469415 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.55■■□□□ 1.2
MCF2L-221ENST00000469415 ZBTB40Q9NUA8 1239 aa22.54■■□□□ 1.2
MCF2L-221ENST00000469415 KIF16BQ96L93 1317 aa22.53■■□□□ 1.2
MCF2L-221ENST00000469415 ACEP12821 1306 aa22.53■■□□□ 1.2
MCF2L-221ENST00000469415 C14orf37Q86TY3 774 aa22.52■■□□□ 1.2
MCF2L-221ENST00000469415 PNPLA6Q8IY17 1366 aa22.52■■□□□ 1.2
MCF2L-221ENST00000469415 RIMBP3CA6NJZ7 1639 aa22.52■■□□□ 1.2
MCF2L-221ENST00000469415 RIMBP3BA6NNM3 1639 aa22.52■■□□□ 1.2
MCF2L-221ENST00000469415 RIMBP3Q9UFD9 1639 aa22.52■■□□□ 1.2
MCF2L-221ENST00000469415 BECN1Q14457 450 aa22.51■■□□□ 1.19
MCF2L-221ENST00000469415 ROBO2Q9HCK4 1378 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms