RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	USP32	Q8NFA0	1604 aa		12.66	□□□□□ -0.38
RFX3-209	ENST00000451859	POGK	Q9P215	609 aa		12.65	□□□□□ -0.38
RFX3-209	ENST00000451859	TRAK1	Q9UPV9	953 aa		12.65	□□□□□ -0.38
RFX3-209	ENST00000451859	PXDN	Q92626	1479 aa		12.65	□□□□□ -0.38
RFX3-209	ENST00000451859	AFF2	P51816	1311 aa		12.64	□□□□□ -0.39
RFX3-209	ENST00000451859	SOS2	Q07890	1332 aa	Predicted RBP	12.64	□□□□□ -0.39
RFX3-209	ENST00000451859	NPHP3	Q7Z494	1330 aa		12.64	□□□□□ -0.39
RFX3-209	ENST00000451859	FOXO3	O43524	673 aa		12.64	□□□□□ -0.39
RFX3-209	ENST00000451859	KIAA1210	Q9ULL0	1709 aa		12.63	□□□□□ -0.39
RFX3-209	ENST00000451859	SPDYE4	A6NLX3	237 aa		12.63	□□□□□ -0.39
RFX3-209	ENST00000451859	PAK3	O75914	559 aa	Predicted RBP	12.63	□□□□□ -0.39
RFX3-209	ENST00000451859	ZNF772	Q68DY9	489 aa	Predicted RBP	12.63	□□□□□ -0.39
RFX3-209	ENST00000451859	ADGRB2	O60241	1585 aa		12.63	□□□□□ -0.39
RFX3-209	ENST00000451859	HIRIP3	Q9BW71	556 aa	Predicted RBP	12.62	□□□□□ -0.39
RFX3-209	ENST00000451859	ITSN1	Q15811	1721 aa		12.62	□□□□□ -0.39
RFX3-209	ENST00000451859	MINK1	Q8N4C8	1332 aa	Predicted RBP	12.62	□□□□□ -0.39
RFX3-209	ENST00000451859	POTEM	A6NI47	508 aa		12.61	□□□□□ -0.39
RFX3-209	ENST00000451859	PLEKHG5	O94827	1062 aa		12.61	□□□□□ -0.39
RFX3-209	ENST00000451859	ABCA3	Q99758	1704 aa		12.61	□□□□□ -0.39
RFX3-209	ENST00000451859	SIRT1	Q96EB6	747 aa		12.6	□□□□□ -0.39
RFX3-209	ENST00000451859	NGLY1	Q96IV0	654 aa		12.6	□□□□□ -0.39
RFX3-209	ENST00000451859	PHF8	Q9UPP1	1060 aa		12.59	□□□□□ -0.39
RFX3-209	ENST00000451859	RXRB	P28702	533 aa		12.58	□□□□□ -0.4
RFX3-209	ENST00000451859	PMFBP1	Q8TBY8	1022 aa		12.58	□□□□□ -0.4
RFX3-209	ENST00000451859	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.58	□□□□□ -0.4
RFX3-209	ENST00000451859	ASTL	Q6HA08	431 aa	Predicted RBP	12.57	□□□□□ -0.4
RFX3-209	ENST00000451859	LMOD2	Q6P5Q4	547 aa		12.57	□□□□□ -0.4
RFX3-209	ENST00000451859	KRT28	Q7Z3Y7	464 aa		12.57	□□□□□ -0.4
RFX3-209	ENST00000451859	PLCH1	Q4KWH8	1693 aa		12.57	□□□□□ -0.4
RFX3-209	ENST00000451859	QRICH2	Q9H0J4	1663 aa		12.57	□□□□□ -0.4
RFX3-209	ENST00000451859	TULP4	Q9NRJ4	1543 aa		12.57	□□□□□ -0.4
RFX3-209	ENST00000451859	POTEJ	P0CG39	1038 aa		12.56	□□□□□ -0.4
RFX3-209	ENST00000451859	POTEG	Q6S5H5	508 aa		12.56	□□□□□ -0.4
RFX3-209	ENST00000451859	QTRT2	Q9H974	415 aa	Known RBP	12.56	□□□□□ -0.4
RFX3-209	ENST00000451859	TNS3	Q68CZ2	1445 aa		12.55	□□□□□ -0.4
RFX3-209	ENST00000451859	ANKAR	Q7Z5J8	1434 aa		12.55	□□□□□ -0.4
RFX3-209	ENST00000451859	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	12.55	□□□□□ -0.4
RFX3-209	ENST00000451859	HAP1	P54257	671 aa	Predicted RBP	12.55	□□□□□ -0.4
RFX3-209	ENST00000451859	STAC3	Q96MF2	364 aa		12.55	□□□□□ -0.4
RFX3-209	ENST00000451859	USP21	Q9UK80	565 aa		12.55	□□□□□ -0.4
RFX3-209	ENST00000451859	SPATA31A3	Q5VYP0	1347 aa		12.55	□□□□□ -0.4
RFX3-209	ENST00000451859	TRPM1	Q7Z4N2	1603 aa		12.55	□□□□□ -0.4
RFX3-209	ENST00000451859	ALS2	Q96Q42	1657 aa		12.54	□□□□□ -0.4
RFX3-209	ENST00000451859	RGS12	O14924	1447 aa		12.54	□□□□□ -0.4
RFX3-209	ENST00000451859	PSME1	Q06323	249 aa		12.54	□□□□□ -0.4
RFX3-209	ENST00000451859	NEUROD1	Q13562	356 aa		12.54	□□□□□ -0.4
RFX3-209	ENST00000451859	MS4A3	Q96HJ5	214 aa		12.54	□□□□□ -0.4
RFX3-209	ENST00000451859	SIN3A	Q96ST3	1273 aa		12.54	□□□□□ -0.4
RFX3-209	ENST00000451859	PRR36	Q9H6K5	1346 aa		12.54	□□□□□ -0.4
RFX3-209	ENST00000451859	TOPAZ1	Q8N9V7	1692 aa		12.54	□□□□□ -0.4
RFX3-209	ENST00000451859	EIF3A	Q14152	1382 aa	Known RBP	12.54	□□□□□ -0.4
RFX3-209	ENST00000451859	WASL	O00401	505 aa	Predicted RBP	12.53	□□□□□ -0.4
RFX3-209	ENST00000451859	NBPF1	Q3BBV0	1214 aa		12.53	□□□□□ -0.4
RFX3-209	ENST00000451859	CABLES1	Q8TDN4	633 aa		12.53	□□□□□ -0.4
RFX3-209	ENST00000451859	METRN	Q9UJH8	293 aa		12.53	□□□□□ -0.4
RFX3-209	ENST00000451859	CDK12	Q9NYV4	1490 aa	Predicted RBP	12.53	□□□□□ -0.4
RFX3-209	ENST00000451859	ATMIN	O43313	823 aa	Predicted RBP	12.52	□□□□□ -0.41
RFX3-209	ENST00000451859	RBM6	P78332	1123 aa	Known RBP	12.52	□□□□□ -0.41
RFX3-209	ENST00000451859	ATP7B	P35670	1465 aa		12.52	□□□□□ -0.41
RFX3-209	ENST00000451859	CRYBG1	Q9Y4K1	1723 aa		12.51	□□□□□ -0.41
RFX3-209	ENST00000451859	BRWD3	Q6RI45	1802 aa		12.51	□□□□□ -0.41
RFX3-209	ENST00000451859	NWD2	Q9ULI1	1742 aa		12.51	□□□□□ -0.41
RFX3-209	ENST00000451859	NGDN	Q8NEJ9	315 aa	Known RBP	12.5	□□□□□ -0.41
RFX3-209	ENST00000451859	L3MBTL2	Q969R5	705 aa		12.5	□□□□□ -0.41
RFX3-209	ENST00000451859	TRPC5	Q9UL62	973 aa	Predicted RBP	12.5	□□□□□ -0.41
RFX3-209	ENST00000451859	SBNO1	A3KN83	1393 aa		12.5	□□□□□ -0.41
RFX3-209	ENST00000451859	GPRASP1	Q5JY77	1395 aa		12.5	□□□□□ -0.41
RFX3-209	ENST00000451859	ATRN	O75882	1429 aa		12.5	□□□□□ -0.41
RFX3-209	ENST00000451859	BCL9L	Q86UU0	1499 aa		12.49	□□□□□ -0.41
RFX3-209	ENST00000451859	ARHGEF10	O15013	1369 aa		12.49	□□□□□ -0.41
RFX3-209	ENST00000451859	FNBP4	Q8N3X1	1017 aa	Predicted RBP	12.49	□□□□□ -0.41
RFX3-209	ENST00000451859	PHRF1	Q9P1Y6	1649 aa	Known RBP	12.48	□□□□□ -0.41
RFX3-209	ENST00000451859	NUDT16	Q96DE0	195 aa	Known RBP	12.48	□□□□□ -0.41
RFX3-209	ENST00000451859	CDK19	Q9BWU1	502 aa		12.48	□□□□□ -0.41
RFX3-209	ENST00000451859	NRAP	Q86VF7	1730 aa		12.48	□□□□□ -0.41
RFX3-209	ENST00000451859	GLI3	P10071	1580 aa		12.47	□□□□□ -0.41
RFX3-209	ENST00000451859	SLC39A7	Q92504	469 aa		12.47	□□□□□ -0.41
RFX3-209	ENST00000451859	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.47	□□□□□ -0.41
RFX3-209	ENST00000451859	EP400	Q96L91	3159 aa		12.47	□□□□□ -0.41
RFX3-209	ENST00000451859	COL14A1	Q05707	1796 aa	Known RBP	12.46	□□□□□ -0.41
RFX3-209	ENST00000451859	CENPJ	Q9HC77	1338 aa	Predicted RBP	12.46	□□□□□ -0.41
RFX3-209	ENST00000451859	C7	P10643	843 aa		12.46	□□□□□ -0.41
RFX3-209	ENST00000451859	SLIT2	O94813	1529 aa		12.46	□□□□□ -0.42
RFX3-209	ENST00000451859	SRPK2	P78362	688 aa	Known RBP	12.45	□□□□□ -0.42
RFX3-209	ENST00000451859	LCE2D	Q5TA82	110 aa	Predicted RBP	12.45	□□□□□ -0.42
RFX3-209	ENST00000451859	ROCK2	O75116	1388 aa	Known RBP	12.44	□□□□□ -0.42
RFX3-209	ENST00000451859	UNC5CL	Q8IV45	518 aa		12.44	□□□□□ -0.42
RFX3-209	ENST00000451859	CCDC9	Q9Y3X0	531 aa	Known RBP	12.44	□□□□□ -0.42
RFX3-209	ENST00000451859	RALGAPB	Q86X10	1494 aa		12.44	□□□□□ -0.42
RFX3-209	ENST00000451859	NUTM2G	Q5VZR2	741 aa		12.43	□□□□□ -0.42
RFX3-209	ENST00000451859	GJD4	Q96KN9	370 aa	Predicted RBP	12.43	□□□□□ -0.42
RFX3-209	ENST00000451859	CABP2	Q9NPB3	220 aa		12.43	□□□□□ -0.42
RFX3-209	ENST00000451859	PPIP5K1	Q6PFW1	1433 aa		12.43	□□□□□ -0.42
RFX3-209	ENST00000451859	ACE	P12821	1306 aa		12.42	□□□□□ -0.42
RFX3-209	ENST00000451859	TRIM26	Q12899	539 aa	Predicted RBP	12.42	□□□□□ -0.42
RFX3-209	ENST00000451859	CCDC61	Q9Y6R9	512 aa		12.42	□□□□□ -0.42
RFX3-209	ENST00000451859	AKAP12	Q02952	1782 aa		12.42	□□□□□ -0.42
RFX3-209	ENST00000451859	ATAD2	Q6PL18	1390 aa		12.42	□□□□□ -0.42
RFX3-209	ENST00000451859	TONSL	Q96HA7	1378 aa		12.41	□□□□□ -0.42
RFX3-209	ENST00000451859	NRK	Q7Z2Y5	1582 aa		12.4	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 81 ms