RNA–Protein interactions for RNA: ENST00000446231.6

SMG1-202, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG1, Length 16,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-202ENST00000446231 LRRC9Q6ZRR7 1453 aa9.37□□□□□ -0.91
SMG1-202ENST00000446231 EIF3JO75822 258 aaKnown RBP9.37□□□□□ -0.91
SMG1-202ENST00000446231 FILIP1Q7Z7B0 1213 aa9.37□□□□□ -0.91
SMG1-202ENST00000446231 KIAA0754O94854 1291 aa9.37□□□□□ -0.91
SMG1-202ENST00000446231 USP25Q9UHP3 1055 aa9.37□□□□□ -0.91
SMG1-202ENST00000446231 KANK1Q14678 1352 aa9.37□□□□□ -0.91
SMG1-202ENST00000446231 UTP14CQ5TAP6 766 aaKnown RBP9.37□□□□□ -0.91
SMG1-202ENST00000446231 C14orf37Q86TY3 774 aa9.37□□□□□ -0.91
SMG1-202ENST00000446231 TSR2Q969E8 191 aaKnown RBP9.37□□□□□ -0.91
SMG1-202ENST00000446231 PCDHB15Q9Y5E8 787 aa9.37□□□□□ -0.91
SMG1-202ENST00000446231 LRSAM1Q6UWE0 723 aa9.37□□□□□ -0.91
SMG1-202ENST00000446231 CAGE1Q8TC20 777 aa9.37□□□□□ -0.91
SMG1-202ENST00000446231 FOSBP53539 338 aa9.37□□□□□ -0.91
SMG1-202ENST00000446231 TULP1O00294 542 aaPredicted RBP9.36□□□□□ -0.91
SMG1-202ENST00000446231 CTR9Q6PD62 1173 aa9.36□□□□□ -0.91
SMG1-202ENST00000446231 HFM1A2PYH4 1435 aa9.36□□□□□ -0.91
SMG1-202ENST00000446231 HDAC1Q13547 482 aaPredicted RBP9.36□□□□□ -0.91
SMG1-202ENST00000446231 ZNF396Q96N95 335 aaPredicted RBP9.36□□□□□ -0.91
SMG1-202ENST00000446231 CCDC191Q8NCU4 936 aa9.36□□□□□ -0.91
SMG1-202ENST00000446231 NUP62CLQ9H1M0 184 aa9.36□□□□□ -0.91
SMG1-202ENST00000446231 TBC1D9Q6ZT07 1266 aa9.36□□□□□ -0.91
SMG1-202ENST00000446231 LRPPRCP42704 1394 aaKnown RBP9.35□□□□□ -0.91
SMG1-202ENST00000446231 CEP57L1Q8IYX8 460 aa9.35□□□□□ -0.91
SMG1-202ENST00000446231 GABPB1Q06547 395 aaPredicted RBP9.35□□□□□ -0.91
SMG1-202ENST00000446231 CAMK4Q16566 473 aa9.35□□□□□ -0.91
SMG1-202ENST00000446231 C17orf53Q8N3J3 647 aaPredicted RBP9.35□□□□□ -0.91
SMG1-202ENST00000446231 TRMT1Q9NXH9 659 aaKnown RBP9.35□□□□□ -0.91
SMG1-202ENST00000446231 SFPQP23246 707 aaKnown RBP eCLIP9.35□□□□□ -0.91
SMG1-202ENST00000446231 GIMAP7Q8NHV1 300 aa9.35□□□□□ -0.91
SMG1-202ENST00000446231 ATF7IPQ6VMQ6 1270 aa9.35□□□□□ -0.91
SMG1-202ENST00000446231 RUFY1Q96T51 708 aa9.35□□□□□ -0.91
SMG1-202ENST00000446231 ARAP1Q96P48 1450 aa9.35□□□□□ -0.91
SMG1-202ENST00000446231 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.35□□□□□ -0.91
SMG1-202ENST00000446231 KDM2BQ8NHM5 1336 aa9.35□□□□□ -0.91
SMG1-202ENST00000446231 PSMA5P28066 241 aa9.35□□□□□ -0.91
SMG1-202ENST00000446231 CAVIN2O95810 425 aa9.35□□□□□ -0.91
SMG1-202ENST00000446231 EXOSC9Q06265 439 aaKnown RBP9.35□□□□□ -0.91
SMG1-202ENST00000446231 ERLIN1O75477 346 aa9.35□□□□□ -0.91
SMG1-202ENST00000446231 IFIT2P09913 472 aaKnown RBP9.34□□□□□ -0.91
SMG1-202ENST00000446231 TRIM34Q9BYJ4 488 aa9.34□□□□□ -0.91
SMG1-202ENST00000446231 SSH1Q8WYL5 1049 aa9.34□□□□□ -0.91
SMG1-202ENST00000446231 CDR1P51861 262 aa9.34□□□□□ -0.91
SMG1-202ENST00000446231 TMEM57Q8N5G2 664 aa9.34□□□□□ -0.91
SMG1-202ENST00000446231 NUCB1Q02818 461 aa9.34□□□□□ -0.91
SMG1-202ENST00000446231 SMTNL1A8MU46 457 aa9.34□□□□□ -0.91
SMG1-202ENST00000446231 LMAN1P49257 510 aa9.34□□□□□ -0.91
SMG1-202ENST00000446231 IPO7O95373 1038 aaKnown RBP9.34□□□□□ -0.91
SMG1-202ENST00000446231 GNAI1P63096 354 aa9.34□□□□□ -0.91
SMG1-202ENST00000446231 TOP2AP11388 1531 aaKnown RBP9.34□□□□□ -0.91
SMG1-202ENST00000446231 LARP1BQ659C4 914 aaKnown RBP9.34□□□□□ -0.91
SMG1-202ENST00000446231 ANKRD20A12PQ8NF67 263 aa9.34□□□□□ -0.91
SMG1-202ENST00000446231 MAP3K1Q13233 1512 aa9.34□□□□□ -0.92
SMG1-202ENST00000446231 KRT85P78386 507 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 ANKRD30BQ9BXX2 1392 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 AXDND1Q5T1B0 1012 aaPredicted RBP9.33□□□□□ -0.92
SMG1-202ENST00000446231 TTLL5Q6EMB2 1281 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 TTC12Q9H892 705 aaPredicted RBP9.33□□□□□ -0.92
SMG1-202ENST00000446231 PDRG1Q9NUG6 133 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 NACADO15069 1562 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.33□□□□□ -0.92
SMG1-202ENST00000446231 MNAT1P51948 309 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 ZSCAN31Q96LW9 406 aaPredicted RBP9.33□□□□□ -0.92
SMG1-202ENST00000446231 PPP1R9BQ96SB3 815 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 ZNF445P59923 1031 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 SPATA32Q96LK8 384 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 ZNF644Q9H582 1327 aaPredicted RBP9.33□□□□□ -0.92
SMG1-202ENST00000446231 FMNL2Q96PY5 1086 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 CCDC144AA2RUR9 1427 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 BMP2KLQ5H9B9 411 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 PPFIBP1Q86W92 1011 aa9.33□□□□□ -0.92
SMG1-202ENST00000446231 HNRNPMP52272 730 aaKnown RBP eCLIP9.32□□□□□ -0.926e-7■□□□□ 11.1
SMG1-202ENST00000446231 USP48Q86UV5 1035 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 CPLX1O14810 134 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 TRAK1Q9UPV9 953 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 MYOM3Q5VTT5 1437 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 ZNF500O60304 480 aaPredicted RBP9.32□□□□□ -0.92
SMG1-202ENST00000446231 DIAPH1O60610 1272 aaKnown RBP9.32□□□□□ -0.92
SMG1-202ENST00000446231 TOMM22Q9NS69 142 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 DDX11Q96FC9 970 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 SLC26A8Q96RN1 970 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 CLIP2Q9UDT6 1046 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 IVLP07476 585 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 MTHFSP49914 203 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 TSC1Q92574 1164 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 CEBPZQ03701 1054 aaKnown RBP9.32□□□□□ -0.92
SMG1-202ENST00000446231 G3BP1Q13283 466 aaKnown RBP eCLIP9.32□□□□□ -0.928e-7■□□□□ 8.4
SMG1-202ENST00000446231 SYNE3Q6ZMZ3 975 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 FAM193AP78312 1265 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 SKILP12757 684 aa9.32□□□□□ -0.92
SMG1-202ENST00000446231 SH2B1Q9NRF2 756 aaPredicted RBP9.32□□□□□ -0.92
SMG1-202ENST00000446231 CBFA2T2O43439 604 aa9.31□□□□□ -0.92
SMG1-202ENST00000446231 PES1O00541 588 aaKnown RBP9.31□□□□□ -0.92
SMG1-202ENST00000446231 SOX12O15370 315 aa9.31□□□□□ -0.92
SMG1-202ENST00000446231 UPF3BQ9BZI7 483 aaKnown RBP9.31□□□□□ -0.92
SMG1-202ENST00000446231 CYP46A1Q9Y6A2 500 aa9.31□□□□□ -0.92
SMG1-202ENST00000446231 JAKMIP3Q5VZ66 844 aa9.31□□□□□ -0.92
SMG1-202ENST00000446231 V9GYY5 206 aaPredicted RBP9.31□□□□□ -0.92
SMG1-202ENST00000446231 TTC31Q49AM3 519 aaPredicted RBP9.31□□□□□ -0.92
SMG1-202ENST00000446231 RRP12Q5JTH9 1297 aaKnown RBP9.31□□□□□ -0.92
SMG1-202ENST00000446231 CCDC102AQ96A19 550 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms