RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 NPM2Q86SE8 214 aaKnown RBP18.41■□□□□ 0.54
LIMD1-202ENST00000440097 WWC1Q8IX03 1113 aa18.41■□□□□ 0.54
LIMD1-202ENST00000440097 NGEFQ8N5V2 710 aa18.41■□□□□ 0.54
LIMD1-202ENST00000440097 FBLN1P23142 703 aa18.4■□□□□ 0.54
LIMD1-202ENST00000440097 SHPRHQ149N8 1683 aa18.39■□□□□ 0.53
LIMD1-202ENST00000440097 SIRT1Q96EB6 747 aa18.39■□□□□ 0.53
LIMD1-202ENST00000440097 ATP7BP35670 1465 aa18.38■□□□□ 0.53
LIMD1-202ENST00000440097 C20orf194Q5TEA3 1177 aa18.38■□□□□ 0.53
LIMD1-202ENST00000440097 TECPR2O15040 1411 aa18.38■□□□□ 0.53
LIMD1-202ENST00000440097 AMOTL2Q9Y2J4 779 aa18.38■□□□□ 0.53
LIMD1-202ENST00000440097 NME9Q86XW9 330 aa18.37■□□□□ 0.53
LIMD1-202ENST00000440097 RTN4Q9NQC3 1192 aaKnown RBP18.37■□□□□ 0.53
LIMD1-202ENST00000440097 DIAPH1O60610 1272 aaKnown RBP18.36■□□□□ 0.53
LIMD1-202ENST00000440097 LAS1LQ9Y4W2 734 aaKnown RBP18.36■□□□□ 0.53
LIMD1-202ENST00000440097 MAPK8IP3Q9UPT6 1336 aa18.36■□□□□ 0.53
LIMD1-202ENST00000440097 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.36■□□□□ 0.53
LIMD1-202ENST00000440097 RBM33Q96EV2 1170 aaKnown RBP18.35■□□□□ 0.53
LIMD1-202ENST00000440097 CRBNQ96SW2 442 aa18.35■□□□□ 0.53
LIMD1-202ENST00000440097 CPS1P31327 1500 aa18.35■□□□□ 0.53
LIMD1-202ENST00000440097 NKTRP30414 1462 aaKnown RBP18.34■□□□□ 0.53
LIMD1-202ENST00000440097 ZRANB1Q9UGI0 708 aa18.34■□□□□ 0.53
LIMD1-202ENST00000440097 MED14O60244 1454 aa18.34■□□□□ 0.53
LIMD1-202ENST00000440097 KNDC1Q76NI1 1749 aa18.34■□□□□ 0.53
LIMD1-202ENST00000440097 NEFMP07197 916 aa18.34■□□□□ 0.53
LIMD1-202ENST00000440097 COG3Q96JB2 828 aa18.34■□□□□ 0.53
LIMD1-202ENST00000440097 EDC4Q6P2E9 1401 aaKnown RBP18.33■□□□□ 0.53
LIMD1-202ENST00000440097 PRR36Q9H6K5 1346 aa18.33■□□□□ 0.53
LIMD1-202ENST00000440097 TRMT2AQ8IZ69 625 aaKnown RBP18.33■□□□□ 0.52
LIMD1-202ENST00000440097 TBX22Q9Y458 520 aa18.32■□□□□ 0.52
LIMD1-202ENST00000440097 KIF20BQ96Q89 1820 aa18.32■□□□□ 0.52
LIMD1-202ENST00000440097 ANKRD26Q9UPS8 1709 aa18.31■□□□□ 0.52
LIMD1-202ENST00000440097 CPSF1Q10570 1443 aaKnown RBP18.31■□□□□ 0.52
LIMD1-202ENST00000440097 POLKQ9UBT6 870 aa18.31■□□□□ 0.52
LIMD1-202ENST00000440097 TCERG1O14776 1098 aaKnown RBP18.31■□□□□ 0.52
LIMD1-202ENST00000440097 ZNF692Q9BU19 519 aaPredicted RBP18.31■□□□□ 0.52
LIMD1-202ENST00000440097 PTPRUQ92729 1446 aa18.31■□□□□ 0.52
LIMD1-202ENST00000440097 BCAR3O75815 825 aa18.3■□□□□ 0.52
LIMD1-202ENST00000440097 PDE4AP27815 886 aa18.3■□□□□ 0.52
LIMD1-202ENST00000440097 CANXP27824 592 aaKnown RBP18.3■□□□□ 0.52
LIMD1-202ENST00000440097 EMILIN1Q9Y6C2 1016 aa18.3■□□□□ 0.52
LIMD1-202ENST00000440097 SLIT1O75093 1534 aa18.3■□□□□ 0.52
LIMD1-202ENST00000440097 ACEP12821 1306 aa18.29■□□□□ 0.52
LIMD1-202ENST00000440097 ARHGAP23Q9P227 1491 aa18.29■□□□□ 0.52
LIMD1-202ENST00000440097 RRS1Q15050 365 aaKnown RBP18.29■□□□□ 0.52
LIMD1-202ENST00000440097 PMFBP1Q8TBY8 1022 aa18.29■□□□□ 0.52
LIMD1-202ENST00000440097 WDR63Q8IWG1 891 aa18.28■□□□□ 0.52
LIMD1-202ENST00000440097 USP35Q9P2H5 1018 aa18.28■□□□□ 0.52
LIMD1-202ENST00000440097 IQSEC2Q5JU85 1478 aa18.28■□□□□ 0.52
LIMD1-202ENST00000440097 RIMS1Q86UR5 1692 aaKnown RBP18.27■□□□□ 0.52
LIMD1-202ENST00000440097 CDC42BPGQ6DT37 1551 aa18.27■□□□□ 0.52
LIMD1-202ENST00000440097 SOX12O15370 315 aa18.27■□□□□ 0.52
LIMD1-202ENST00000440097 SKAP1Q86WV1 359 aa18.27■□□□□ 0.51
LIMD1-202ENST00000440097 PNNQ9H307 717 aaKnown RBP18.27■□□□□ 0.51
LIMD1-202ENST00000440097 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.26■□□□□ 0.51
LIMD1-202ENST00000440097 HMOX1P09601 288 aa18.26■□□□□ 0.51
LIMD1-202ENST00000440097 TMPOP42166 694 aaKnown RBP18.26■□□□□ 0.51
LIMD1-202ENST00000440097 BACH2Q9BYV9 841 aa18.26■□□□□ 0.51
LIMD1-202ENST00000440097 COL3A1P02461 1466 aaPredicted RBP18.26■□□□□ 0.51
LIMD1-202ENST00000440097 CCDC27Q2M243 656 aa18.26■□□□□ 0.51
LIMD1-202ENST00000440097 MYH16Q9H6N6 1097 aa18.26■□□□□ 0.51
LIMD1-202ENST00000440097 KCNA6P17658 529 aa18.25■□□□□ 0.51
LIMD1-202ENST00000440097 FRAT1Q92837 279 aaPredicted RBP18.25■□□□□ 0.51
LIMD1-202ENST00000440097 PLEKHF1Q96S99 279 aa18.25■□□□□ 0.51
LIMD1-202ENST00000440097 RIPK4P57078 832 aa18.25■□□□□ 0.51
LIMD1-202ENST00000440097 NGDNQ8NEJ9 315 aaKnown RBP18.25■□□□□ 0.51
LIMD1-202ENST00000440097 ANKLE2Q86XL3 938 aa18.25■□□□□ 0.51
LIMD1-202ENST00000440097 PNPLA6Q8IY17 1366 aa18.24■□□□□ 0.51
LIMD1-202ENST00000440097 PRKAR2BP31323 418 aa18.24■□□□□ 0.51
LIMD1-202ENST00000440097 CEP170BQ9Y4F5 1589 aaPredicted RBP18.24■□□□□ 0.51
LIMD1-202ENST00000440097 PHF23Q9BUL5 403 aaPredicted RBP18.24■□□□□ 0.51
LIMD1-202ENST00000440097 BCL2L13Q9BXK5 485 aa18.23■□□□□ 0.51
LIMD1-202ENST00000440097 ITSN1Q15811 1721 aa18.23■□□□□ 0.51
LIMD1-202ENST00000440097 TTC21BQ7Z4L5 1316 aa18.23■□□□□ 0.51
LIMD1-202ENST00000440097 MAP2P11137 1827 aaKnown RBP18.23■□□□□ 0.51
LIMD1-202ENST00000440097 FCHSD2O94868 740 aa18.22■□□□□ 0.51
LIMD1-202ENST00000440097 TSR2Q969E8 191 aaKnown RBP18.22■□□□□ 0.51
LIMD1-202ENST00000440097 PLEKHG3A1L390 1219 aa18.21■□□□□ 0.51
LIMD1-202ENST00000440097 MS4A1P11836 297 aa18.21■□□□□ 0.51
LIMD1-202ENST00000440097 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.21■□□□□ 0.51
LIMD1-202ENST00000440097 PLEKHG5O94827 1062 aa18.2■□□□□ 0.5
LIMD1-202ENST00000440097 ADGRB2O60241 1585 aa18.2■□□□□ 0.5
LIMD1-202ENST00000440097 HSPA2P54652 639 aa18.2■□□□□ 0.5
LIMD1-202ENST00000440097 PTCH1Q13635 1447 aa18.2■□□□□ 0.5
LIMD1-202ENST00000440097 MON2Q7Z3U7 1717 aa18.2■□□□□ 0.5
LIMD1-202ENST00000440097 TRIM35Q9UPQ4 493 aa18.19■□□□□ 0.5
LIMD1-202ENST00000440097 RSPH6AQ9H0K4 717 aa18.19■□□□□ 0.5
LIMD1-202ENST00000440097 USP6P35125 1406 aa18.18■□□□□ 0.5
LIMD1-202ENST00000440097 DIP2AQ14689 1571 aa18.18■□□□□ 0.5
LIMD1-202ENST00000440097 RARSP54136 660 aaKnown RBP18.18■□□□□ 0.5
LIMD1-202ENST00000440097 AATKQ6ZMQ8 1374 aa18.18■□□□□ 0.5
LIMD1-202ENST00000440097 AKAP12Q02952 1782 aa18.17■□□□□ 0.5
LIMD1-202ENST00000440097 IL13P35225 146 aa18.17■□□□□ 0.5
LIMD1-202ENST00000440097 NCBP3Q53F19 620 aaKnown RBP18.16■□□□□ 0.5
LIMD1-202ENST00000440097 PHACTR3Q96KR7 559 aa18.16■□□□□ 0.5
LIMD1-202ENST00000440097 C14orf37Q86TY3 774 aa18.16■□□□□ 0.5
LIMD1-202ENST00000440097 PANK1Q8TE04 598 aa18.16■□□□□ 0.5
LIMD1-202ENST00000440097 LRRC7Q96NW7 1537 aa18.15■□□□□ 0.5
LIMD1-202ENST00000440097 CDK12Q9NYV4 1490 aaPredicted RBP18.15■□□□□ 0.5
LIMD1-202ENST00000440097 EXOSC9Q06265 439 aaKnown RBP18.15■□□□□ 0.5
LIMD1-202ENST00000440097 COG6Q9Y2V7 657 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms