RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 TMEM131LA2VDJ0 1609 aa15.1■□□□□ 0.01
CD44-209ENST00000433892 SMC4Q9NTJ3 1288 aa15.09■□□□□ 0.01
CD44-209ENST00000433892 DZIP1LQ8IYY4 767 aaKnown RBP15.09■□□□□ 0.01
CD44-209ENST00000433892 COL3A1P02461 1466 aaPredicted RBP15.09■□□□□ 0.01
CD44-209ENST00000433892 CD163L1Q9NR16 1453 aa15.09■□□□□ 0.01
CD44-209ENST00000433892 CDK19Q9BWU1 502 aa15.08■□□□□ 0
CD44-209ENST00000433892 PREX1Q8TCU6 1659 aa15.08■□□□□ 0
CD44-209ENST00000433892 CABP1Q9NZU7 370 aa15.08■□□□□ 0
CD44-209ENST00000433892 CT47B1P0C2W7 299 aaPredicted RBP15.07■□□□□ 0
CD44-209ENST00000433892 HDGFL2Q7Z4V5 671 aaPredicted RBP15.07■□□□□ 0
CD44-209ENST00000433892 SSH1Q8WYL5 1049 aa15.07■□□□□ 0
CD44-209ENST00000433892 STAG3Q9UJ98 1225 aa15.07■□□□□ 0
CD44-209ENST00000433892 NLRP1Q9C000 1473 aa15.07■□□□□ 0
CD44-209ENST00000433892 DIAPH1O60610 1272 aaKnown RBP15.06■□□□□ 0
CD44-209ENST00000433892 TRIM27P14373 513 aa15.06■□□□□ 0
CD44-209ENST00000433892 RIPK4P57078 832 aa15.06■□□□□ 0
CD44-209ENST00000433892 FRAT2O75474 233 aaPredicted RBP15.06■□□□□ 0
CD44-209ENST00000433892 GSE1Q14687 1217 aa15.06■□□□□ 0
CD44-209ENST00000433892 FBLN1P23142 703 aa15.04■□□□□ -0
CD44-209ENST00000433892 ITPRIPQ8IWB1 547 aa15.04■□□□□ -0
CD44-209ENST00000433892 MED14O60244 1454 aa15.04■□□□□ -0
CD44-209ENST00000433892 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.04■□□□□ -0
CD44-209ENST00000433892 NOB1Q9ULX3 412 aaKnown RBP15.04■□□□□ -0
CD44-209ENST00000433892 ALKQ9UM73 1620 aa15.03■□□□□ -0
CD44-209ENST00000433892 ATF7IPQ6VMQ6 1270 aa15.03■□□□□ -0
CD44-209ENST00000433892 WAPLQ7Z5K2 1190 aa15.03■□□□□ -0
CD44-209ENST00000433892 UPF2Q9HAU5 1272 aaKnown RBP15.03■□□□□ -0
CD44-209ENST00000433892 CLTCQ00610 1675 aaKnown RBP15.03■□□□□ -0
CD44-209ENST00000433892 IL16Q14005 1332 aa15.02■□□□□ -0
CD44-209ENST00000433892 PNPLA6Q8IY17 1366 aa15.02■□□□□ -0
CD44-209ENST00000433892 ARHGEF40Q8TER5 1519 aa15.02■□□□□ -0
CD44-209ENST00000433892 BECN1Q14457 450 aa15.02□□□□□ -0.01
CD44-209ENST00000433892 IL27Q8NEV9 243 aa15.02□□□□□ -0.01
CD44-209ENST00000433892 ANKRD26Q9UPS8 1709 aa15.02□□□□□ -0.01
CD44-209ENST00000433892 CYB5RLQ6IPT4 315 aa15.01□□□□□ -0.01
CD44-209ENST00000433892 ZMYM3Q14202 1370 aa15.01□□□□□ -0.01
CD44-209ENST00000433892 TBC1D32Q96NH3 1257 aa15.01□□□□□ -0.01
CD44-209ENST00000433892 DDX19BQ9UMR2 479 aa15.01□□□□□ -0.01
CD44-209ENST00000433892 PNNQ9H307 717 aaKnown RBP15□□□□□ -0.01
CD44-209ENST00000433892 TMEM57Q8N5G2 664 aa15□□□□□ -0.01
CD44-209ENST00000433892 SLKQ9H2G2 1235 aaPredicted RBP15□□□□□ -0.01
CD44-209ENST00000433892 FCHSD2O94868 740 aa14.99□□□□□ -0.01
CD44-209ENST00000433892 PRKAR2BP31323 418 aa14.99□□□□□ -0.01
CD44-209ENST00000433892 POLKQ9UBT6 870 aa14.99□□□□□ -0.01
CD44-209ENST00000433892 HDAC1Q13547 482 aaPredicted RBP14.99□□□□□ -0.01
CD44-209ENST00000433892 FAM69CQ0P6D2 419 aa14.98□□□□□ -0.01
CD44-209ENST00000433892 RSPH6AQ9H0K4 717 aa14.97□□□□□ -0.01
CD44-209ENST00000433892 HMOX1P09601 288 aa14.97□□□□□ -0.01
CD44-209ENST00000433892 LRRC7Q96NW7 1537 aa14.97□□□□□ -0.01
CD44-209ENST00000433892 KIF16BQ96L93 1317 aa14.97□□□□□ -0.01
CD44-209ENST00000433892 IPO8O15397 1037 aaKnown RBP14.96□□□□□ -0.01
CD44-209ENST00000433892 ZBTB40Q9NUA8 1239 aa14.96□□□□□ -0.01
CD44-209ENST00000433892 KIF20BQ96Q89 1820 aa14.96□□□□□ -0.01
CD44-209ENST00000433892 PHACTR3Q96KR7 559 aa14.96□□□□□ -0.01
CD44-209ENST00000433892 MLECQ14165 292 aa14.95□□□□□ -0.02
CD44-209ENST00000433892 THUMPD2Q9BTF0 503 aaKnown RBP14.95□□□□□ -0.02
CD44-209ENST00000433892 TBC1D2Q9BYX2 928 aa14.95□□□□□ -0.02
CD44-209ENST00000433892 EMILIN1Q9Y6C2 1016 aa14.95□□□□□ -0.02
CD44-209ENST00000433892 A2ML1A8K2U0 1454 aa14.95□□□□□ -0.02
CD44-209ENST00000433892 FAM135BQ49AJ0 1406 aa14.94□□□□□ -0.02
CD44-209ENST00000433892 ALDH1L2Q3SY69 923 aa14.94□□□□□ -0.02
CD44-209ENST00000433892 SMC5Q8IY18 1101 aa14.94□□□□□ -0.02
CD44-209ENST00000433892 RTN4Q9NQC3 1192 aaKnown RBP14.94□□□□□ -0.02
CD44-209ENST00000433892 RIMS2Q9UQ26 1411 aa14.94□□□□□ -0.02
CD44-209ENST00000433892 MFAP1P55081 439 aaKnown RBP14.94□□□□□ -0.02
CD44-209ENST00000433892 BRPF3Q9ULD4 1205 aa14.94□□□□□ -0.02
CD44-209ENST00000433892 ATP7BP35670 1465 aa14.93□□□□□ -0.02
CD44-209ENST00000433892 NME9Q86XW9 330 aa14.93□□□□□ -0.02
CD44-209ENST00000433892 ANTXR1Q9H6X2 564 aa14.93□□□□□ -0.02
CD44-209ENST00000433892 ZRANB1Q9UGI0 708 aa14.93□□□□□ -0.02
CD44-209ENST00000433892 CDC42BPGQ6DT37 1551 aa14.93□□□□□ -0.02
CD44-209ENST00000433892 NFE2L2Q16236 605 aa14.92□□□□□ -0.02
CD44-209ENST00000433892 DLC1Q96QB1 1528 aa14.91□□□□□ -0.02
CD44-209ENST00000433892 SPRYD3Q8NCJ5 442 aa14.91□□□□□ -0.02
CD44-209ENST00000433892 C22orf23Q9BZE7 217 aa14.91□□□□□ -0.02
CD44-209ENST00000433892 WASLO00401 505 aaPredicted RBP14.91□□□□□ -0.02
CD44-209ENST00000433892 ELL2O00472 640 aaPredicted RBP14.91□□□□□ -0.02
CD44-209ENST00000433892 TSPYL6Q8N831 410 aa14.91□□□□□ -0.02
CD44-209ENST00000433892 PPP6R1Q9UPN7 881 aa14.91□□□□□ -0.02
CD44-209ENST00000433892 NCKAP5LQ9HCH0 1330 aa14.91□□□□□ -0.02
CD44-209ENST00000433892 MAP2P11137 1827 aaKnown RBP14.91□□□□□ -0.02
CD44-209ENST00000433892 PPIP5K1Q6PFW1 1433 aa14.9□□□□□ -0.02
CD44-209ENST00000433892 IL13P35225 146 aa14.9□□□□□ -0.02
CD44-209ENST00000433892 TXNDC2Q86VQ3 553 aa14.9□□□□□ -0.02
CD44-209ENST00000433892 VAMP4O75379 141 aa14.9□□□□□ -0.02
CD44-209ENST00000433892 LNPKQ9C0E8 428 aa14.9□□□□□ -0.02
CD44-209ENST00000433892 TSPOAP1O95153 1857 aa14.89□□□□□ -0.03
CD44-209ENST00000433892 NUCB1Q02818 461 aa14.89□□□□□ -0.03
CD44-209ENST00000433892 ZNF428Q96B54 188 aa14.89□□□□□ -0.03
CD44-209ENST00000433892 METP08581 1390 aa14.89□□□□□ -0.03
CD44-209ENST00000433892 CPSF1Q10570 1443 aaKnown RBP14.89□□□□□ -0.03
CD44-209ENST00000433892 EDC4Q6P2E9 1401 aaKnown RBP14.89□□□□□ -0.03
CD44-209ENST00000433892 RRS1Q15050 365 aaKnown RBP14.89□□□□□ -0.03
CD44-209ENST00000433892 RIMBP3CA6NJZ7 1639 aa14.88□□□□□ -0.03
CD44-209ENST00000433892 RIMBP3BA6NNM3 1639 aa14.88□□□□□ -0.03
CD44-209ENST00000433892 RIMBP3Q9UFD9 1639 aa14.88□□□□□ -0.03
CD44-209ENST00000433892 BRPF1P55201 1214 aaPredicted RBP14.88□□□□□ -0.03
CD44-209ENST00000433892 MRPL50Q8N5N7 158 aaKnown RBP14.88□□□□□ -0.03
CD44-209ENST00000433892 NUDT16Q96DE0 195 aaKnown RBP14.88□□□□□ -0.03
CD44-209ENST00000433892 SETD1AO15047 1707 aaKnown RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms