RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 SYNMO15061 1565 aa21.42■■□□□ 1.02
PTPRA-205ENST00000399903 TPM2P07951 284 aa21.41■■□□□ 1.02
PTPRA-205ENST00000399903 MYOM1P52179 1685 aa21.41■■□□□ 1.02
PTPRA-205ENST00000399903 TNPO1Q92973 898 aaKnown RBP21.41■■□□□ 1.02
PTPRA-205ENST00000399903 GGNBP2Q9H3C7 697 aa21.41■■□□□ 1.02
PTPRA-205ENST00000399903 MTHFSP49914 203 aa21.4■■□□□ 1.02
PTPRA-205ENST00000399903 KDM5AP29375 1690 aaKnown RBP21.4■■□□□ 1.02
PTPRA-205ENST00000399903 FBLN1P23142 703 aa21.4■■□□□ 1.02
PTPRA-205ENST00000399903 WAPLQ7Z5K2 1190 aa21.39■■□□□ 1.02
PTPRA-205ENST00000399903 RPGRIP1LQ68CZ1 1315 aa21.39■■□□□ 1.01
PTPRA-205ENST00000399903 NRXN1Q9ULB1 1477 aa21.39■■□□□ 1.01
PTPRA-205ENST00000399903 CAMSAP1Q5T5Y3 1602 aa21.39■■□□□ 1.01
PTPRA-205ENST00000399903 SLC52A1Q9NWF4 448 aa21.38■■□□□ 1.01
PTPRA-205ENST00000399903 EVC2Q86UK5 1308 aa21.38■■□□□ 1.01
PTPRA-205ENST00000399903 WWC1Q8IX03 1113 aa21.38■■□□□ 1.01
PTPRA-205ENST00000399903 GBP4Q96PP9 640 aa21.38■■□□□ 1.01
PTPRA-205ENST00000399903 NLRP1Q9C000 1473 aa21.38■■□□□ 1.01
PTPRA-205ENST00000399903 NASPP49321 788 aaPredicted RBP21.37■■□□□ 1.01
PTPRA-205ENST00000399903 TRMT2AQ8IZ69 625 aaKnown RBP21.37■■□□□ 1.01
PTPRA-205ENST00000399903 RIMBP3CA6NJZ7 1639 aa21.37■■□□□ 1.01
PTPRA-205ENST00000399903 RIMBP3BA6NNM3 1639 aa21.37■■□□□ 1.01
PTPRA-205ENST00000399903 RIMBP3Q9UFD9 1639 aa21.37■■□□□ 1.01
PTPRA-205ENST00000399903 RARSP54136 660 aaKnown RBP21.35■■□□□ 1.01
PTPRA-205ENST00000399903 ADGRB1O14514 1584 aa21.35■■□□□ 1.01
PTPRA-205ENST00000399903 IFT172Q9UG01 1749 aa21.35■■□□□ 1.01
PTPRA-205ENST00000399903 RICTORQ6R327 1708 aa21.34■■□□□ 1.01
PTPRA-205ENST00000399903 PRDM10Q9NQV6 1147 aa21.34■■□□□ 1.01
PTPRA-205ENST00000399903 DDX49Q9Y6V7 483 aaKnown RBP21.34■■□□□ 1.01
PTPRA-205ENST00000399903 PPLO60437 1756 aa21.33■■□□□ 1.01
PTPRA-205ENST00000399903 ITPRIPQ8IWB1 547 aa21.33■■□□□ 1
PTPRA-205ENST00000399903 ESF1Q9H501 851 aaKnown RBP21.33■■□□□ 1
PTPRA-205ENST00000399903 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.32■■□□□ 11e-6■■■□□ 16.5
PTPRA-205ENST00000399903 KIAA1210Q9ULL0 1709 aa21.32■■□□□ 1
PTPRA-205ENST00000399903 U2SURPO15042 1029 aaKnown RBP21.31■■□□□ 1
PTPRA-205ENST00000399903 INSRP06213 1382 aa21.31■■□□□ 1
PTPRA-205ENST00000399903 XPCQ01831 940 aaPredicted RBP21.31■■□□□ 1
PTPRA-205ENST00000399903 U2AF1L5P0DN76 240 aaPredicted RBP21.31■■□□□ 1
PTPRA-205ENST00000399903 U2AF1Q01081 240 aaKnown RBP eCLIP21.31■■□□□ 17e-6■■■■□ 20
PTPRA-205ENST00000399903 NEXMIFQ5QGS0 1516 aa21.3■■□□□ 1
PTPRA-205ENST00000399903 ZSCAN30Q86W11 494 aa21.3■■□□□ 1
PTPRA-205ENST00000399903 LNPKQ9C0E8 428 aa21.3■■□□□ 1
PTPRA-205ENST00000399903 CABP1Q9NZU7 370 aa21.29■■□□□ 1
PTPRA-205ENST00000399903 NUTM2FA1L443 756 aa21.29■■□□□ 1
PTPRA-205ENST00000399903 QRICH2Q9H0J4 1663 aa21.29■■□□□ 1
PTPRA-205ENST00000399903 GOLGA6L22H0YM25 854 aa21.29■■□□□ 1
PTPRA-205ENST00000399903 GLI2P10070 1586 aa21.28■■□□□ 1
PTPRA-205ENST00000399903 TCP11L2Q8N4U5 519 aa21.28■■□□□ 1
PTPRA-205ENST00000399903 MYO5BQ9ULV0 1848 aa21.28■■□□□ 1
PTPRA-205ENST00000399903 NCKAP5LQ9HCH0 1330 aa21.28■■□□□ 1
PTPRA-205ENST00000399903 SSFA2P28290 1259 aa21.28■■□□□ 1
PTPRA-205ENST00000399903 CDK19Q9BWU1 502 aa21.28■■□□□ 1
PTPRA-205ENST00000399903 SBNO2Q9Y2G9 1366 aa21.28■■□□□ 1
PTPRA-205ENST00000399903 PIK3C2BO00750 1634 aa21.27■■□□□ 1
PTPRA-205ENST00000399903 CCDC173Q0VFZ6 552 aa21.27■■□□□ 1
PTPRA-205ENST00000399903 NPC1L1Q9UHC9 1359 aa21.27■■□□□ 1
PTPRA-205ENST00000399903 RBM42Q9BTD8 480 aaKnown RBP21.27■□□□□ 0.99
PTPRA-205ENST00000399903 ZHX1Q9UKY1 873 aaPredicted RBP21.26■□□□□ 0.99
PTPRA-205ENST00000399903 TXNDC2Q86VQ3 553 aa21.26■□□□□ 0.99
PTPRA-205ENST00000399903 A0A1W2PP64 1363 aa21.26■□□□□ 0.99
PTPRA-205ENST00000399903 CEBPAP49715 358 aaPredicted RBP21.26■□□□□ 0.99
PTPRA-205ENST00000399903 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.26■□□□□ 0.99
PTPRA-205ENST00000399903 SMC4Q9NTJ3 1288 aa21.26■□□□□ 0.99
PTPRA-205ENST00000399903 TULP4Q9NRJ4 1543 aa21.25■□□□□ 0.99
PTPRA-205ENST00000399903 NEURL4Q96JN8 1562 aa21.25■□□□□ 0.99
PTPRA-205ENST00000399903 RIPK4P57078 832 aa21.25■□□□□ 0.99
PTPRA-205ENST00000399903 TSR2Q969E8 191 aaKnown RBP21.25■□□□□ 0.99
PTPRA-205ENST00000399903 UQCRHLA0A096LP55 91 aa21.24■□□□□ 0.99
PTPRA-205ENST00000399903 UQCRHP07919 91 aa21.24■□□□□ 0.99
PTPRA-205ENST00000399903 DZIP1LQ8IYY4 767 aaKnown RBP21.24■□□□□ 0.99
PTPRA-205ENST00000399903 CAVIN1Q6NZI2 390 aaKnown RBP21.24■□□□□ 0.99
PTPRA-205ENST00000399903 ZNF692Q9BU19 519 aaPredicted RBP21.24■□□□□ 0.99
PTPRA-205ENST00000399903 DIP2BQ9P265 1576 aa21.24■□□□□ 0.99
PTPRA-205ENST00000399903 MVPQ14764 893 aaKnown RBP21.24■□□□□ 0.99
PTPRA-205ENST00000399903 SKOR2Q2VWA4 1001 aaPredicted RBP21.24■□□□□ 0.99
PTPRA-205ENST00000399903 ISY1Q9ULR0 285 aaKnown RBP21.23■□□□□ 0.99
PTPRA-205ENST00000399903 ARHGAP31Q2M1Z3 1444 aa21.23■□□□□ 0.99
PTPRA-205ENST00000399903 SETBP1Q9Y6X0 1596 aa21.23■□□□□ 0.99
PTPRA-205ENST00000399903 ZKSCAN2Q63HK3 967 aa21.22■□□□□ 0.99
PTPRA-205ENST00000399903 MCTP1Q6DN14 999 aa21.22■□□□□ 0.99
PTPRA-205ENST00000399903 OFD1O75665 1012 aa21.22■□□□□ 0.99
PTPRA-205ENST00000399903 MPNDQ8N594 471 aa21.22■□□□□ 0.99
PTPRA-205ENST00000399903 YTHDC2Q9H6S0 1430 aaKnown RBP21.21■□□□□ 0.99
PTPRA-205ENST00000399903 CD2BP2O95400 341 aaKnown RBP21.21■□□□□ 0.99
PTPRA-205ENST00000399903 CFAP53Q96M91 514 aa21.21■□□□□ 0.99
PTPRA-205ENST00000399903 FOXD4L5Q5VV16 416 aaPredicted RBP21.21■□□□□ 0.99
PTPRA-205ENST00000399903 FOXD4L4Q8WXT5 416 aaPredicted RBP21.21■□□□□ 0.99
PTPRA-205ENST00000399903 FYB1O15117 783 aa21.2■□□□□ 0.98
PTPRA-205ENST00000399903 CALD1Q05682 793 aaKnown RBP21.2■□□□□ 0.98
PTPRA-205ENST00000399903 TPRNQ4KMQ1 711 aa21.2■□□□□ 0.98
PTPRA-205ENST00000399903 ANKRD36BQ8N2N9 1353 aa21.19■□□□□ 0.98
PTPRA-205ENST00000399903 ZRANB1Q9UGI0 708 aa21.19■□□□□ 0.98
PTPRA-205ENST00000399903 DNTTIP2Q5QJE6 756 aaKnown RBP21.19■□□□□ 0.98
PTPRA-205ENST00000399903 RAB3GAP1Q15042 981 aa21.18■□□□□ 0.98
PTPRA-205ENST00000399903 RUNDC1Q96C34 613 aa21.18■□□□□ 0.98
PTPRA-205ENST00000399903 POLR3AO14802 1390 aaPredicted RBP21.18■□□□□ 0.98
PTPRA-205ENST00000399903 PREX1Q8TCU6 1659 aa21.18■□□□□ 0.98
PTPRA-205ENST00000399903 NINLQ9Y2I6 1382 aa21.17■□□□□ 0.98
PTPRA-205ENST00000399903 TERF2IPQ9NYB0 399 aa21.16■□□□□ 0.98
PTPRA-205ENST00000399903 MYO3AQ8NEV4 1616 aa21.16■□□□□ 0.98
PTPRA-205ENST00000399903 RNF214Q8ND24 703 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms