RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 C6orf229H3BNL8 230 aa7.74□□□□□ -1.17
HMGB1-204ENST00000399489 REPIN1Q9BWE0 567 aaKnown RBP7.74□□□□□ -1.17
HMGB1-204ENST00000399489 WNT7AO00755 349 aa7.73□□□□□ -1.17
HMGB1-204ENST00000399489 GUCA2AQ02747 115 aa7.73□□□□□ -1.17
HMGB1-204ENST00000399489 GIGYF2Q6Y7W6 1299 aaKnown RBP7.72□□□□□ -1.17
HMGB1-204ENST00000399489 AK7Q96M32 723 aa7.72□□□□□ -1.17
HMGB1-204ENST00000399489 SNIP1Q8TAD8 396 aaKnown RBP7.72□□□□□ -1.17
HMGB1-204ENST00000399489 SPIRE2Q8WWL2 714 aa7.72□□□□□ -1.17
HMGB1-204ENST00000399489 TOR4AQ9NXH8 423 aa7.72□□□□□ -1.17
HMGB1-204ENST00000399489 H3BM21 787 aa7.71□□□□□ -1.18
HMGB1-204ENST00000399489 SPDYE5A6NIY4 337 aa7.7□□□□□ -1.18
HMGB1-204ENST00000399489 SYMPKQ92797 1274 aaKnown RBP7.7□□□□□ -1.18
HMGB1-204ENST00000399489 NUDT12Q9BQG2 462 aa7.7□□□□□ -1.18
HMGB1-204ENST00000399489 BEGAINQ9BUH8 593 aa7.7□□□□□ -1.18
HMGB1-204ENST00000399489 MS4A1P11836 297 aa7.69□□□□□ -1.18
HMGB1-204ENST00000399489 WNT7BP56706 349 aa7.69□□□□□ -1.18
HMGB1-204ENST00000399489 ERBB4Q15303 1308 aa7.68□□□□□ -1.18
HMGB1-204ENST00000399489 MOXD2PA6NHM9 499 aa7.67□□□□□ -1.18
HMGB1-204ENST00000399489 TRIM66O15016 1216 aa7.67□□□□□ -1.18
HMGB1-204ENST00000399489 NDUFV2P19404 249 aa7.67□□□□□ -1.18
HMGB1-204ENST00000399489 MTMR2Q13614 643 aa7.67□□□□□ -1.18
HMGB1-204ENST00000399489 MRGPRX2Q96LB1 330 aa7.67□□□□□ -1.18
HMGB1-204ENST00000399489 GTF3C3Q9Y5Q9 886 aa7.67□□□□□ -1.18
HMGB1-204ENST00000399489 CCNYL3P0C7X3 344 aa7.66□□□□□ -1.18
HMGB1-204ENST00000399489 RC3H1Q5TC82 1133 aaKnown RBP7.66□□□□□ -1.18
HMGB1-204ENST00000399489 HOMEZQ8IX15 550 aa7.66□□□□□ -1.18
HMGB1-204ENST00000399489 PCDHGC3Q9UN70 934 aa7.66□□□□□ -1.18
HMGB1-204ENST00000399489 GJA5P36382 358 aa7.66□□□□□ -1.18
HMGB1-204ENST00000399489 PTPRNQ16849 979 aa7.66□□□□□ -1.18
HMGB1-204ENST00000399489 PARP9Q8IXQ6 854 aa7.65□□□□□ -1.18
HMGB1-204ENST00000399489 PRR7Q8TB68 274 aa7.65□□□□□ -1.18
HMGB1-204ENST00000399489 TBC1D2Q9BYX2 928 aa7.65□□□□□ -1.18
HMGB1-204ENST00000399489 ERICH6Q7L0X2 663 aa7.64□□□□□ -1.19
HMGB1-204ENST00000399489 EHBP1Q8NDI1 1231 aa7.64□□□□□ -1.19
HMGB1-204ENST00000399489 GOLGA2P5Q9HBQ8 144 aa7.64□□□□□ -1.19
HMGB1-204ENST00000399489 DESI1Q6ICB0 168 aa7.64□□□□□ -1.19
HMGB1-204ENST00000399489 SMPD1P17405 629 aa7.63□□□□□ -1.19
HMGB1-204ENST00000399489 RSBN1LQ6PCB5 846 aaPredicted RBP7.63□□□□□ -1.19
HMGB1-204ENST00000399489 ZBTB3Q9H5J0 574 aa7.62□□□□□ -1.19
HMGB1-204ENST00000399489 SPTLC1O15269 473 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 SKOR1P84550 965 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 PDE4DQ08499 809 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 KCNH2Q12809 1159 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 EVA1BQ9NVM1 165 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 J3QL48 77 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 ALDH1A1P00352 501 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 CTHP32929 405 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 RIC3Q7Z5B4 369 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 UNC93B1Q9H1C4 597 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 WASF2Q9Y6W5 498 aa7.61□□□□□ -1.19
HMGB1-204ENST00000399489 PRPF38BQ5VTL8 546 aaKnown RBP7.6□□□□□ -1.19
HMGB1-204ENST00000399489 PTCRAQ6ISU1 281 aaPredicted RBP7.6□□□□□ -1.19
HMGB1-204ENST00000399489 KRTAP5-3Q6L8H2 238 aa7.59□□□□□ -1.19
HMGB1-204ENST00000399489 ADAMTS8Q9UP79 889 aa7.59□□□□□ -1.19
HMGB1-204ENST00000399489 NUTM2BA6NNL0 878 aaPredicted RBP7.58□□□□□ -1.2
HMGB1-204ENST00000399489 NUTM2EB1AL46 878 aaPredicted RBP7.58□□□□□ -1.2
HMGB1-204ENST00000399489 MSTNO14793 375 aa7.58□□□□□ -1.2
HMGB1-204ENST00000399489 NUTM2DQ5VT03 806 aaPredicted RBP7.58□□□□□ -1.2
HMGB1-204ENST00000399489 KANK3Q6NY19 840 aa7.58□□□□□ -1.2
HMGB1-204ENST00000399489 NUTM2AQ8IVF1 878 aaPredicted RBP7.58□□□□□ -1.2
HMGB1-204ENST00000399489 SLC24A3Q9HC58 644 aa7.58□□□□□ -1.2
HMGB1-204ENST00000399489 PLEKHG3A1L390 1219 aa7.58□□□□□ -1.2
HMGB1-204ENST00000399489 LINC01559Q495D7 138 aa7.58□□□□□ -1.2
HMGB1-204ENST00000399489 HRCP23327 699 aa7.57□□□□□ -1.2
HMGB1-204ENST00000399489 SH3BP2P78314 561 aa7.57□□□□□ -1.2
HMGB1-204ENST00000399489 CSPP1Q1MSJ5 1256 aa7.57□□□□□ -1.2
HMGB1-204ENST00000399489 LYPD8Q6UX82 237 aa7.57□□□□□ -1.2
HMGB1-204ENST00000399489 BAP1Q92560 729 aa7.57□□□□□ -1.2
HMGB1-204ENST00000399489 HPS1Q92902 700 aa7.57□□□□□ -1.2
HMGB1-204ENST00000399489 RSPH6AQ9H0K4 717 aa7.57□□□□□ -1.2
HMGB1-204ENST00000399489 VARSP26640 1264 aaKnown RBP7.56□□□□□ -1.2
HMGB1-204ENST00000399489 TSC1Q92574 1164 aa7.56□□□□□ -1.2
HMGB1-204ENST00000399489 PCDHB15Q9Y5E8 787 aa7.56□□□□□ -1.2
HMGB1-204ENST00000399489 K7ELQ4 463 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-204ENST00000399489 ZNF511Q8NB15 262 aa7.55□□□□□ -1.2
HMGB1-204ENST00000399489 TUSC1Q2TAM9 212 aa7.55□□□□□ -1.2
HMGB1-204ENST00000399489 SIAH2O43255 324 aa7.54□□□□□ -1.2
HMGB1-204ENST00000399489 VEGFBP49765 207 aa7.54□□□□□ -1.2
HMGB1-204ENST00000399489 TMEM132AQ24JP5 1023 aa7.54□□□□□ -1.2
HMGB1-204ENST00000399489 HELBQ8NG08 1087 aaPredicted RBP7.54□□□□□ -1.2
HMGB1-204ENST00000399489 FAM174AQ8TBP5 190 aa7.54□□□□□ -1.2
HMGB1-204ENST00000399489 CFAP99D6REC4 459 aa7.53□□□□□ -1.2
HMGB1-204ENST00000399489 MYSM1Q5VVJ2 828 aa7.53□□□□□ -1.2
HMGB1-204ENST00000399489 ARMC2Q8NEN0 867 aa7.53□□□□□ -1.2
HMGB1-204ENST00000399489 CABLES1Q8TDN4 633 aa7.53□□□□□ -1.2
HMGB1-204ENST00000399489 VSIG8P0DPA2 414 aa7.52□□□□□ -1.2
HMGB1-204ENST00000399489 AGERQ15109 404 aa7.52□□□□□ -1.2
HMGB1-204ENST00000399489 CAPN5O15484 640 aaPredicted RBP7.52□□□□□ -1.21
HMGB1-204ENST00000399489 IRS1P35568 1242 aa7.52□□□□□ -1.21
HMGB1-204ENST00000399489 CLK2P49760 499 aaKnown RBP7.52□□□□□ -1.21
HMGB1-204ENST00000399489 MPNDQ8N594 471 aa7.52□□□□□ -1.21
HMGB1-204ENST00000399489 ATP1B4Q9UN42 357 aaPredicted RBP7.52□□□□□ -1.21
HMGB1-204ENST00000399489 LIMD1Q9UGP4 676 aa7.51□□□□□ -1.21
HMGB1-204ENST00000399489 LILRB3O75022 631 aa7.49□□□□□ -1.21
HMGB1-204ENST00000399489 BPHLQ86WA6 291 aaPredicted RBP7.49□□□□□ -1.21
HMGB1-204ENST00000399489 MAP10Q9P2G4 905 aa7.49□□□□□ -1.21
HMGB1-204ENST00000399489 F12P00748 615 aaPredicted RBP7.49□□□□□ -1.21
HMGB1-204ENST00000399489 NBPF14Q5TI25 921 aa7.49□□□□□ -1.21
HMGB1-204ENST00000399489 TLL2Q9Y6L7 1015 aa7.49□□□□□ -1.21
HMGB1-204ENST00000399489 NNTQ13423 1086 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms