RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ITPRIPQ8IWB1 547 aa26.26■■□□□ 1.79
CLK3-202ENST00000395066 PUS7Q96PZ0 661 aaKnown RBP26.26■■□□□ 1.79
CLK3-202ENST00000395066 FBXO31Q5XUX0 539 aaPredicted RBP26.25■■□□□ 1.79
CLK3-202ENST00000395066 OSCARQ8IYS5 282 aa26.25■■□□□ 1.79
CLK3-202ENST00000395066 SPRYD3Q8NCJ5 442 aa26.24■■□□□ 1.79
CLK3-202ENST00000395066 RIPK4P57078 832 aa26.23■■□□□ 1.79
CLK3-202ENST00000395066 NOB1Q9ULX3 412 aaKnown RBP26.23■■□□□ 1.79
CLK3-202ENST00000395066 COL3A1P02461 1466 aaPredicted RBP26.22■■□□□ 1.79
CLK3-202ENST00000395066 TBC1D32Q96NH3 1257 aa26.22■■□□□ 1.79
CLK3-202ENST00000395066 AAMPQ13685 434 aa26.21■■□□□ 1.79
CLK3-202ENST00000395066 BECN1Q14457 450 aa26.21■■□□□ 1.79
CLK3-202ENST00000395066 PTPRMP28827 1452 aa26.21■■□□□ 1.79
CLK3-202ENST00000395066 CD163L1Q9NR16 1453 aa26.21■■□□□ 1.79
CLK3-202ENST00000395066 UPF2Q9HAU5 1272 aaKnown RBP26.2■■□□□ 1.79
CLK3-202ENST00000395066 CABP1Q9NZU7 370 aa26.2■■□□□ 1.78
CLK3-202ENST00000395066 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.19■■□□□ 1.78
CLK3-202ENST00000395066 TERF2IPQ9NYB0 399 aa26.19■■□□□ 1.78
CLK3-202ENST00000395066 TMEM57Q8N5G2 664 aa26.18■■□□□ 1.78
CLK3-202ENST00000395066 TBC1D2Q9BYX2 928 aa26.18■■□□□ 1.78
CLK3-202ENST00000395066 ATF7IPQ6VMQ6 1270 aa26.18■■□□□ 1.78
CLK3-202ENST00000395066 CDK19Q9BWU1 502 aa26.18■■□□□ 1.78
CLK3-202ENST00000395066 DIAPH1O60610 1272 aaKnown RBP26.18■■□□□ 1.78
CLK3-202ENST00000395066 SLC52A1Q9NWF4 448 aa26.18■■□□□ 1.78
CLK3-202ENST00000395066 YTHDC2Q9H6S0 1430 aaKnown RBP26.17■■□□□ 1.78
CLK3-202ENST00000395066 MFAP1P55081 439 aaKnown RBP26.16■■□□□ 1.78
CLK3-202ENST00000395066 ATAD2Q6PL18 1390 aa26.15■■□□□ 1.78
CLK3-202ENST00000395066 ARHGAP31Q2M1Z3 1444 aa26.14■■□□□ 1.78
CLK3-202ENST00000395066 NEO1Q92859 1461 aa26.14■■□□□ 1.78
CLK3-202ENST00000395066 ANTXR1Q9H6X2 564 aa26.14■■□□□ 1.77
CLK3-202ENST00000395066 NCBP3Q53F19 620 aaKnown RBP26.13■■□□□ 1.77
CLK3-202ENST00000395066 WAPLQ7Z5K2 1190 aa26.13■■□□□ 1.77
CLK3-202ENST00000395066 THUMPD2Q9BTF0 503 aaKnown RBP26.13■■□□□ 1.77
CLK3-202ENST00000395066 TMEM131LA2VDJ0 1609 aa26.13■■□□□ 1.77
CLK3-202ENST00000395066 DDX19BQ9UMR2 479 aa26.13■■□□□ 1.77
CLK3-202ENST00000395066 CT47B1P0C2W7 299 aaPredicted RBP26.12■■□□□ 1.77
CLK3-202ENST00000395066 HDGFL2Q7Z4V5 671 aaPredicted RBP26.12■■□□□ 1.77
CLK3-202ENST00000395066 ZFYVE9O95405 1425 aa26.12■■□□□ 1.77
CLK3-202ENST00000395066 HMOX1P09601 288 aa26.11■■□□□ 1.77
CLK3-202ENST00000395066 STAG3Q9UJ98 1225 aa26.11■■□□□ 1.77
CLK3-202ENST00000395066 PRKAR2BP31323 418 aa26.11■■□□□ 1.77
CLK3-202ENST00000395066 FAM43AQ8N2R8 423 aa26.11■■□□□ 1.77
CLK3-202ENST00000395066 PREX1Q8TCU6 1659 aa26.1■■□□□ 1.77
CLK3-202ENST00000395066 RICTORQ6R327 1708 aa26.1■■□□□ 1.77
CLK3-202ENST00000395066 HDAC1Q13547 482 aaPredicted RBP26.08■■□□□ 1.77
CLK3-202ENST00000395066 PHACTR3Q96KR7 559 aa26.08■■□□□ 1.77
CLK3-202ENST00000395066 C22orf23Q9BZE7 217 aa26.07■■□□□ 1.76
CLK3-202ENST00000395066 ZBTB40Q9NUA8 1239 aa26.07■■□□□ 1.76
CLK3-202ENST00000395066 ZMYM3Q14202 1370 aa26.07■■□□□ 1.76
CLK3-202ENST00000395066 ANKRD26Q9UPS8 1709 aa26.06■■□□□ 1.76
CLK3-202ENST00000395066 LRRC7Q96NW7 1537 aa26.06■■□□□ 1.76
CLK3-202ENST00000395066 POLKQ9UBT6 870 aa26.06■■□□□ 1.76
CLK3-202ENST00000395066 ELL2O00472 640 aaPredicted RBP26.05■■□□□ 1.76
CLK3-202ENST00000395066 LNPKQ9C0E8 428 aa26.05■■□□□ 1.76
CLK3-202ENST00000395066 IL16Q14005 1332 aa26.05■■□□□ 1.76
CLK3-202ENST00000395066 ALKQ9UM73 1620 aa26.05■■□□□ 1.76
CLK3-202ENST00000395066 PNPLA6Q8IY17 1366 aa26.05■■□□□ 1.76
CLK3-202ENST00000395066 RSPH6AQ9H0K4 717 aa26.04■■□□□ 1.76
CLK3-202ENST00000395066 C1orf115Q9H7X2 142 aa26.04■■□□□ 1.76
CLK3-202ENST00000395066 SMC5Q8IY18 1101 aa26.04■■□□□ 1.76
CLK3-202ENST00000395066 ZRANB1Q9UGI0 708 aa26.04■■□□□ 1.76
CLK3-202ENST00000395066 ARHGEF40Q8TER5 1519 aa26.04■■□□□ 1.76
CLK3-202ENST00000395066 ARXQ96QS3 562 aa26.03■■□□□ 1.76
CLK3-202ENST00000395066 EMILIN1Q9Y6C2 1016 aa26.03■■□□□ 1.76
CLK3-202ENST00000395066 TSPYL6Q8N831 410 aa26.02■■□□□ 1.76
CLK3-202ENST00000395066 MED14O60244 1454 aa26.02■■□□□ 1.76
CLK3-202ENST00000395066 CLTCQ00610 1675 aaKnown RBP26.02■■□□□ 1.76
CLK3-202ENST00000395066 KIF16BQ96L93 1317 aa26.01■■□□□ 1.76
CLK3-202ENST00000395066 FCHSD2O94868 740 aa26.01■■□□□ 1.75
CLK3-202ENST00000395066 NCKAP5LQ9HCH0 1330 aa26■■□□□ 1.75
CLK3-202ENST00000395066 KIF20BQ96Q89 1820 aa25.99■■□□□ 1.75
CLK3-202ENST00000395066 IPO8O15397 1037 aaKnown RBP25.99■■□□□ 1.75
CLK3-202ENST00000395066 L1TD1Q5T7N2 865 aaKnown RBP25.98■■□□□ 1.75
CLK3-202ENST00000395066 NME9Q86XW9 330 aa25.98■■□□□ 1.75
CLK3-202ENST00000395066 MLECQ14165 292 aa25.97■■□□□ 1.75
CLK3-202ENST00000395066 FAM135BQ49AJ0 1406 aa25.97■■□□□ 1.75
CLK3-202ENST00000395066 EIF5BO60841 1220 aaKnown RBP25.96■■□□□ 1.75
CLK3-202ENST00000395066 NUCB1Q02818 461 aa25.96■■□□□ 1.75
CLK3-202ENST00000395066 PNNQ9H307 717 aaKnown RBP25.96■■□□□ 1.75
CLK3-202ENST00000395066 ALDH1L2Q3SY69 923 aa25.95■■□□□ 1.74
CLK3-202ENST00000395066 VAMP4O75379 141 aa25.94■■□□□ 1.74
CLK3-202ENST00000395066 NFE2L2Q16236 605 aa25.94■■□□□ 1.74
CLK3-202ENST00000395066 GZF1Q9H116 711 aaPredicted RBP25.94■■□□□ 1.74
CLK3-202ENST00000395066 MAP2P11137 1827 aaKnown RBP25.94■■□□□ 1.74
CLK3-202ENST00000395066 RRS1Q15050 365 aaKnown RBP25.93■■□□□ 1.74
CLK3-202ENST00000395066 CHD1LQ86WJ1 897 aa25.93■■□□□ 1.74
CLK3-202ENST00000395066 FAM83GA6ND36 823 aa25.92■■□□□ 1.74
CLK3-202ENST00000395066 CYB5RLQ6IPT4 315 aa25.92■■□□□ 1.74
CLK3-202ENST00000395066 ANKRD45Q5TZF3 282 aa25.92■■□□□ 1.74
CLK3-202ENST00000395066 MBIPQ9NS73 344 aa25.91■■□□□ 1.74
CLK3-202ENST00000395066 DCTN1Q14203 1278 aa25.91■■□□□ 1.74
CLK3-202ENST00000395066 MRPL50Q8N5N7 158 aaKnown RBP25.91■■□□□ 1.74
CLK3-202ENST00000395066 ZBTB7BO15156 539 aaPredicted RBP25.9■■□□□ 1.74
CLK3-202ENST00000395066 PPIP5K1Q6PFW1 1433 aa25.9■■□□□ 1.74
CLK3-202ENST00000395066 TXNDC2Q86VQ3 553 aa25.89■■□□□ 1.74
CLK3-202ENST00000395066 IL13P35225 146 aa25.89■■□□□ 1.73
CLK3-202ENST00000395066 CDC42BPGQ6DT37 1551 aa25.88■■□□□ 1.73
CLK3-202ENST00000395066 MCM4P33991 863 aa25.88■■□□□ 1.73
CLK3-202ENST00000395066 C8orf58Q8NAV2 365 aa25.87■■□□□ 1.73
CLK3-202ENST00000395066 HSCBQ8IWL3 235 aa25.86■■□□□ 1.73
CLK3-202ENST00000395066 SIRT2Q8IXJ6 389 aa25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms