RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 GCC1Q96CN9 775 aa19.91■□□□□ 0.78
PCDH1-203ENST00000394536 PTMSP20962 102 aa19.9■□□□□ 0.78
PCDH1-203ENST00000394536 TXNDC2Q86VQ3 553 aa19.9■□□□□ 0.78
PCDH1-203ENST00000394536 NPC1L1Q9UHC9 1359 aa19.9■□□□□ 0.78
PCDH1-203ENST00000394536 MCCP23508 829 aa19.9■□□□□ 0.78
PCDH1-203ENST00000394536 CAVIN1Q6NZI2 390 aaKnown RBP19.9■□□□□ 0.78
PCDH1-203ENST00000394536 K7ELQ4 463 aaPredicted RBP19.89■□□□□ 0.77
PCDH1-203ENST00000394536 ABCA8O94911 1581 aa19.89■□□□□ 0.77
PCDH1-203ENST00000394536 FBXO31Q5XUX0 539 aaPredicted RBP19.89■□□□□ 0.77
PCDH1-203ENST00000394536 CFAP44Q96MT7 982 aa19.89■□□□□ 0.77
PCDH1-203ENST00000394536 CYB5RLQ6IPT4 315 aa19.89■□□□□ 0.77
PCDH1-203ENST00000394536 RPGRIP1LQ68CZ1 1315 aa19.88■□□□□ 0.77
PCDH1-203ENST00000394536 FAM83GA6ND36 823 aa19.88■□□□□ 0.77
PCDH1-203ENST00000394536 NASPP49321 788 aaPredicted RBP19.88■□□□□ 0.77
PCDH1-203ENST00000394536 SULT6B1Q6IMI4 303 aa19.88■□□□□ 0.77
PCDH1-203ENST00000394536 CCDC27Q2M243 656 aa19.88■□□□□ 0.77
PCDH1-203ENST00000394536 LMOD2Q6P5Q4 547 aa19.88■□□□□ 0.77
PCDH1-203ENST00000394536 HDAC1Q13547 482 aaPredicted RBP19.87■□□□□ 0.77
PCDH1-203ENST00000394536 CDC42BPAQ5VT25 1732 aa19.87■□□□□ 0.77
PCDH1-203ENST00000394536 NFE2L2Q16236 605 aa19.87■□□□□ 0.77
PCDH1-203ENST00000394536 USP19O94966 1318 aa19.86■□□□□ 0.77
PCDH1-203ENST00000394536 SMARCA5O60264 1052 aaPredicted RBP19.86■□□□□ 0.77
PCDH1-203ENST00000394536 INTS3Q68E01 1043 aaKnown RBP19.86■□□□□ 0.77
PCDH1-203ENST00000394536 TSPYL6Q8N831 410 aa19.86■□□□□ 0.77
PCDH1-203ENST00000394536 MIS18AQ9NYP9 233 aa19.86■□□□□ 0.77
PCDH1-203ENST00000394536 ARHGEF5Q12774 1597 aa19.86■□□□□ 0.77
PCDH1-203ENST00000394536 SSFA2P28290 1259 aa19.86■□□□□ 0.77
PCDH1-203ENST00000394536 AMPHP49418 695 aa19.86■□□□□ 0.77
PCDH1-203ENST00000394536 KCNJ4P48050 445 aa19.86■□□□□ 0.77
PCDH1-203ENST00000394536 TBC1D9Q6ZT07 1266 aa19.86■□□□□ 0.77
PCDH1-203ENST00000394536 NME9Q86XW9 330 aa19.86■□□□□ 0.77
PCDH1-203ENST00000394536 ANO2Q9NQ90 1003 aa19.86■□□□□ 0.77
PCDH1-203ENST00000394536 PRPF40AO75400 957 aaKnown RBP19.85■□□□□ 0.77
PCDH1-203ENST00000394536 RNF214Q8ND24 703 aa19.85■□□□□ 0.77
PCDH1-203ENST00000394536 ESPNB1AK53 854 aa19.85■□□□□ 0.77
PCDH1-203ENST00000394536 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.85■□□□□ 0.77
PCDH1-203ENST00000394536 SLC52A1Q9NWF4 448 aa19.85■□□□□ 0.77
PCDH1-203ENST00000394536 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.85■□□□□ 0.77
PCDH1-203ENST00000394536 REC8O95072 547 aa19.84■□□□□ 0.77
PCDH1-203ENST00000394536 VSIG10Q8N0Z9 540 aa19.84■□□□□ 0.77
PCDH1-203ENST00000394536 ZBTB40Q9NUA8 1239 aa19.84■□□□□ 0.77
PCDH1-203ENST00000394536 NGDNQ8NEJ9 315 aaKnown RBP19.84■□□□□ 0.77
PCDH1-203ENST00000394536 CFAP65Q6ZU64 1925 aaKnown RBP19.84■□□□□ 0.77
PCDH1-203ENST00000394536 PRDM15P57071 1507 aaPredicted RBP19.84■□□□□ 0.77
PCDH1-203ENST00000394536 PHACTR3Q96KR7 559 aa19.84■□□□□ 0.77
PCDH1-203ENST00000394536 RRAGDQ9NQL2 400 aaPredicted RBP19.84■□□□□ 0.77
PCDH1-203ENST00000394536 TRIM35Q9UPQ4 493 aa19.84■□□□□ 0.77
PCDH1-203ENST00000394536 SLC4A2P04920 1241 aa19.83■□□□□ 0.77
PCDH1-203ENST00000394536 NUCB1Q02818 461 aa19.83■□□□□ 0.77
PCDH1-203ENST00000394536 OSCARQ8IYS5 282 aa19.83■□□□□ 0.77
PCDH1-203ENST00000394536 NEK4P51957 841 aa19.83■□□□□ 0.77
PCDH1-203ENST00000394536 FKBP5Q13451 457 aaPredicted RBP19.83■□□□□ 0.76
PCDH1-203ENST00000394536 SMC5Q8IY18 1101 aa19.83■□□□□ 0.76
PCDH1-203ENST00000394536 NUCB2P80303 420 aa19.82■□□□□ 0.76
PCDH1-203ENST00000394536 MAST1Q9Y2H9 1570 aa19.82■□□□□ 0.76
PCDH1-203ENST00000394536 MCM10Q7L590 875 aa19.82■□□□□ 0.76
PCDH1-203ENST00000394536 TSPYL4Q9UJ04 414 aa19.82■□□□□ 0.76
PCDH1-203ENST00000394536 PTPRTO14522 1441 aa19.82■□□□□ 0.76
PCDH1-203ENST00000394536 ATP10AO60312 1499 aa19.82■□□□□ 0.76
PCDH1-203ENST00000394536 HDGFP51858 240 aaKnown RBP19.81■□□□□ 0.76
PCDH1-203ENST00000394536 ALDH1L2Q3SY69 923 aa19.81■□□□□ 0.76
PCDH1-203ENST00000394536 ZRANB1Q9UGI0 708 aa19.81■□□□□ 0.76
PCDH1-203ENST00000394536 ATAD2Q6PL18 1390 aa19.81■□□□□ 0.76
PCDH1-203ENST00000394536 ANKRD36BQ8N2N9 1353 aa19.81■□□□□ 0.76
PCDH1-203ENST00000394536 TRPM1Q7Z4N2 1603 aa19.8■□□□□ 0.76
PCDH1-203ENST00000394536 MPNDQ8N594 471 aa19.8■□□□□ 0.76
PCDH1-203ENST00000394536 BMP2KLQ5H9B9 411 aa19.8■□□□□ 0.76
PCDH1-203ENST00000394536 KIAA1211Q6ZU35 1233 aa19.8■□□□□ 0.76
PCDH1-203ENST00000394536 MBIPQ9NS73 344 aa19.8■□□□□ 0.76
PCDH1-203ENST00000394536 C16orf71Q8IYS4 520 aaPredicted RBP19.8■□□□□ 0.76
PCDH1-203ENST00000394536 UGGT1Q9NYU2 1555 aa19.8■□□□□ 0.76
PCDH1-203ENST00000394536 NUTM2GQ5VZR2 741 aa19.79■□□□□ 0.76
PCDH1-203ENST00000394536 RABEP1Q15276 862 aa19.79■□□□□ 0.76
PCDH1-203ENST00000394536 ERVK-7P63135 1459 aa19.79■□□□□ 0.76
PCDH1-203ENST00000394536 EIF2S2P20042 333 aaKnown RBP19.78■□□□□ 0.76
PCDH1-203ENST00000394536 TTC37Q6PGP7 1564 aa19.78■□□□□ 0.76
PCDH1-203ENST00000394536 C8orf58Q8NAV2 365 aa19.78■□□□□ 0.76
PCDH1-203ENST00000394536 CIZ1Q9ULV3 898 aaPredicted RBP19.77■□□□□ 0.76
PCDH1-203ENST00000394536 KRT24Q2M2I5 525 aa19.77■□□□□ 0.76
PCDH1-203ENST00000394536 A0A1W2PP64 1363 aa19.77■□□□□ 0.76
PCDH1-203ENST00000394536 TAOK2Q9UL54 1235 aa19.76■□□□□ 0.75
PCDH1-203ENST00000394536 ABCC11Q96J66 1382 aa19.76■□□□□ 0.75
PCDH1-203ENST00000394536 EXOC6BQ9Y2D4 811 aa19.76■□□□□ 0.75
PCDH1-203ENST00000394536 POLR1AO95602 1720 aaPredicted RBP19.76■□□□□ 0.75
PCDH1-203ENST00000394536 F6X3S4 739 aa19.76■□□□□ 0.75
PCDH1-203ENST00000394536 POLKQ9UBT6 870 aa19.76■□□□□ 0.75
PCDH1-203ENST00000394536 CD109Q6YHK3 1445 aa19.75■□□□□ 0.75
PCDH1-203ENST00000394536 VAMP4O75379 141 aa19.75■□□□□ 0.75
PCDH1-203ENST00000394536 ANTXR1Q9H6X2 564 aa19.75■□□□□ 0.75
PCDH1-203ENST00000394536 FAM13BQ9NYF5 915 aa19.75■□□□□ 0.75
PCDH1-203ENST00000394536 TSHZ3Q63HK5 1081 aa19.74■□□□□ 0.75
PCDH1-203ENST00000394536 GAS2L2Q8NHY3 880 aa19.74■□□□□ 0.75
PCDH1-203ENST00000394536 ZNF428Q96B54 188 aa19.74■□□□□ 0.75
PCDH1-203ENST00000394536 RTEL1-TNFRSF6BF6WH68 1400 aa19.74■□□□□ 0.75
PCDH1-203ENST00000394536 ABCC2Q92887 1545 aa19.74■□□□□ 0.75
PCDH1-203ENST00000394536 FAM69CQ0P6D2 419 aa19.73■□□□□ 0.75
PCDH1-203ENST00000394536 IFT57Q9NWB7 429 aa19.73■□□□□ 0.75
PCDH1-203ENST00000394536 R3HCC1Q9Y3T6 440 aaKnown RBP19.73■□□□□ 0.75
PCDH1-203ENST00000394536 NCKAP5LQ9HCH0 1330 aa19.73■□□□□ 0.75
PCDH1-203ENST00000394536 NUDT16Q96DE0 195 aaKnown RBP19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms