RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 NBPF4Q96M43 638 aa11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 HTATSF1O43719 755 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 FCHSD2O94868 740 aa11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 IRX6P78412 446 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 EP400NLQ6ZTU2 488 aa11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 RTCBQ9Y3I0 505 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 FEZ1Q99689 392 aa11.3□□□□□ -0.6
LIMCH1-202ENST00000381753 CCDC87Q9NVE4 849 aa11.29□□□□□ -0.6
LIMCH1-202ENST00000381753 PPP4R2Q9NY27 417 aa11.29□□□□□ -0.6
LIMCH1-202ENST00000381753 CFAP70Q5T0N1 1121 aa11.29□□□□□ -0.6
LIMCH1-202ENST00000381753 TRIM29Q14134 588 aa11.29□□□□□ -0.6
LIMCH1-202ENST00000381753 VSIG10Q8N0Z9 540 aa11.29□□□□□ -0.6
LIMCH1-202ENST00000381753 PNISRQ8TF01 805 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-202ENST00000381753 NUDT16Q96DE0 195 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-202ENST00000381753 CCDC57Q2TAC2 916 aa11.28□□□□□ -0.6
LIMCH1-202ENST00000381753 TTC39AQ5SRH9 613 aa11.28□□□□□ -0.6
LIMCH1-202ENST00000381753 RIPK4P57078 832 aa11.28□□□□□ -0.6
LIMCH1-202ENST00000381753 PANK3Q9H999 370 aa11.28□□□□□ -0.6
LIMCH1-202ENST00000381753 GLIPR1L2Q4G1C9 344 aa11.28□□□□□ -0.6
LIMCH1-202ENST00000381753 BTG4Q9NY30 223 aa11.28□□□□□ -0.6
LIMCH1-202ENST00000381753 RALBP1Q15311 655 aa11.28□□□□□ -0.6
LIMCH1-202ENST00000381753 ABT1Q9ULW3 272 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-202ENST00000381753 KIF3AQ9Y496 699 aa11.28□□□□□ -0.6
LIMCH1-202ENST00000381753 C11orf95C9JLR9 678 aaPredicted RBP11.27□□□□□ -0.6
LIMCH1-202ENST00000381753 PTMAP06454 111 aaKnown RBP11.27□□□□□ -0.6
LIMCH1-202ENST00000381753 ASXL2Q76L83 1435 aa11.27□□□□□ -0.6
LIMCH1-202ENST00000381753 ZNF428Q96B54 188 aa11.27□□□□□ -0.61
LIMCH1-202ENST00000381753 SETDB2Q96T68 719 aa11.27□□□□□ -0.61
LIMCH1-202ENST00000381753 MPHOSPH6Q99547 160 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-202ENST00000381753 POLA1P09884 1462 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-202ENST00000381753 CFTRP13569 1480 aa11.27□□□□□ -0.61
LIMCH1-202ENST00000381753 BTBD11A6QL63 1104 aa11.27□□□□□ -0.61
LIMCH1-202ENST00000381753 B4GALNT3Q6L9W6 998 aa11.26□□□□□ -0.61
LIMCH1-202ENST00000381753 RILPL2Q969X0 211 aa11.26□□□□□ -0.61
LIMCH1-202ENST00000381753 VPS8Q8N3P4 1428 aa11.26□□□□□ -0.61
LIMCH1-202ENST00000381753 RPGRIP1LQ68CZ1 1315 aa11.26□□□□□ -0.61
LIMCH1-202ENST00000381753 CAVIN4Q5BKX8 364 aa11.26□□□□□ -0.61
LIMCH1-202ENST00000381753 DIAPH3Q9NSV4 1193 aa11.26□□□□□ -0.61
LIMCH1-202ENST00000381753 RAI14Q9P0K7 980 aa11.26□□□□□ -0.61
LIMCH1-202ENST00000381753 PHLDB1Q86UU1 1377 aa11.26□□□□□ -0.61
LIMCH1-202ENST00000381753 FBXO3Q9UK99 471 aa11.26□□□□□ -0.61
LIMCH1-202ENST00000381753 CCDC158Q5M9N0 1113 aa11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 WAPLQ7Z5K2 1190 aa11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 L3MBTL2Q969R5 705 aa11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 HMGXB3Q12766 1538 aa11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 PES1O00541 588 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 DRC1Q96MC2 740 aa11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 CCDC47Q96A33 483 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 CHMP4CQ96CF2 233 aa11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 CCDC85AQ96PX6 553 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 SLKQ9H2G2 1235 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 CCNL1Q9UK58 526 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 ANKRD50Q9ULJ7 1429 aa11.25□□□□□ -0.61
LIMCH1-202ENST00000381753 SLF2Q8IX21 1173 aa11.24□□□□□ -0.61
LIMCH1-202ENST00000381753 TRAPPC3LQ5T215 181 aa11.24□□□□□ -0.61
LIMCH1-202ENST00000381753 CABLES1Q8TDN4 633 aa11.24□□□□□ -0.61
LIMCH1-202ENST00000381753 DNMBPQ6XZF7 1577 aa11.24□□□□□ -0.61
LIMCH1-202ENST00000381753 CCDC30Q5VVM6 783 aa11.24□□□□□ -0.61
LIMCH1-202ENST00000381753 CLUAP1Q96AJ1 413 aa11.24□□□□□ -0.61
LIMCH1-202ENST00000381753 PRKAG2Q9UGJ0 569 aa11.24□□□□□ -0.61
LIMCH1-202ENST00000381753 HSP90AB3PQ58FF7 597 aa11.24□□□□□ -0.61
LIMCH1-202ENST00000381753 CPLX1O14810 134 aa11.23□□□□□ -0.61
LIMCH1-202ENST00000381753 VEZTQ9HBM0 779 aa11.23□□□□□ -0.61
LIMCH1-202ENST00000381753 KIAA0586Q9BVV6 1533 aa11.23□□□□□ -0.61
LIMCH1-202ENST00000381753 ERBINQ96RT1 1412 aa11.23□□□□□ -0.61
LIMCH1-202ENST00000381753 CCDC61Q9Y6R9 512 aa11.23□□□□□ -0.61
LIMCH1-202ENST00000381753 SF3A1Q15459 793 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-202ENST00000381753 SLAIN2Q9P270 581 aa11.23□□□□□ -0.61
LIMCH1-202ENST00000381753 TRMT112Q9UI30 125 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-202ENST00000381753 SULT6B1Q6IMI4 303 aa11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 ATF5Q9Y2D1 282 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 PPP1R42Q7Z4L9 355 aa11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 RALYLQ86SE5 291 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 TEX13AQ9BXU3 409 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 SART3Q15020 963 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 RRP12Q5JTH9 1297 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 HSP90AB4PQ58FF6 505 aa11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 ATF7IPQ6VMQ6 1270 aa11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 CDCA7Q9BWT1 371 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 DZIP1Q86YF9 867 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 RWDD1Q9H446 243 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-202ENST00000381753 GRIN2AQ12879 1464 aa11.21□□□□□ -0.61
LIMCH1-202ENST00000381753 H0YIN7 160 aa11.21□□□□□ -0.61
LIMCH1-202ENST00000381753 GNPATO15228 680 aa11.21□□□□□ -0.61
LIMCH1-202ENST00000381753 GNAI1P63096 354 aa11.21□□□□□ -0.61
LIMCH1-202ENST00000381753 TPD52L1Q16890 204 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-202ENST00000381753 ZCRB1Q8TBF4 217 aaKnown RBP11.21□□□□□ -0.62
LIMCH1-202ENST00000381753 STK11IPQ8N1F8 1099 aa11.21□□□□□ -0.62
LIMCH1-202ENST00000381753 USHBP1Q8N6Y0 703 aa11.21□□□□□ -0.62
LIMCH1-202ENST00000381753 USP47Q96K76 1375 aa11.21□□□□□ -0.62
LIMCH1-202ENST00000381753 TRIM21P19474 475 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 MATR3P43243 847 aaKnown RBP eCLIP11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 USP5P45974 858 aa11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 FAM184AQ8NB25 1140 aa11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 POLR3DP05423 398 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 LRP2BPQ9P2M1 347 aa11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 UBTFL1P0CB47 393 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-202ENST00000381753 MSL1Q68DK7 614 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms