RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 PRPF40AO75400 957 aaKnown RBP11.42□□□□□ -0.58
SNX1-202ENST00000380285 CCDC30Q5VVM6 783 aa11.42□□□□□ -0.58
SNX1-202ENST00000380285 GOLGA6L7A0A1B0GV03 622 aa11.42□□□□□ -0.58
SNX1-202ENST00000380285 TXLNAP40222 546 aa11.42□□□□□ -0.58
SNX1-202ENST00000380285 EPS15P42566 896 aa11.42□□□□□ -0.58
SNX1-202ENST00000380285 BRPF3Q9ULD4 1205 aa11.42□□□□□ -0.58
SNX1-202ENST00000380285 PDZRN3Q9UPQ7 1066 aa11.42□□□□□ -0.58
SNX1-202ENST00000380285 POLA1P09884 1462 aaPredicted RBP11.42□□□□□ -0.58
SNX1-202ENST00000380285 HECW1Q76N89 1606 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 NEK4P51957 841 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 LTV1Q96GA3 475 aaPredicted RBP11.41□□□□□ -0.58
SNX1-202ENST00000380285 ADAMTS8Q9UP79 889 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 FGD5Q6ZNL6 1462 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 GOLGA6L10A6NI86 522 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 KRT85P78386 507 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 ZSCAN30Q86W11 494 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 OFD1O75665 1012 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 HOMEZQ8IX15 550 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 PDILTQ8N807 584 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 ZNHIT6Q9NWK9 470 aaKnown RBP11.41□□□□□ -0.58
SNX1-202ENST00000380285 KIAA0754O94854 1291 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 SMC2O95347 1197 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 MCM4P33991 863 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 RNF214Q8ND24 703 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 PLEKHH1Q9ULM0 1364 aa11.41□□□□□ -0.58
SNX1-202ENST00000380285 CCT4P50991 539 aaKnown RBP11.4□□□□□ -0.58
SNX1-202ENST00000380285 ZRSR2Q15696 482 aaKnown RBP11.4□□□□□ -0.58
SNX1-202ENST00000380285 MAGEC2Q9UBF1 373 aaPredicted RBP11.4□□□□□ -0.58
SNX1-202ENST00000380285 TRIM34Q9BYJ4 488 aa11.4□□□□□ -0.58
SNX1-202ENST00000380285 KIAA1107Q9UPP5 1409 aa11.4□□□□□ -0.58
SNX1-202ENST00000380285 TIAM1Q13009 1591 aa11.4□□□□□ -0.58
SNX1-202ENST00000380285 PPP2R1AP30153 589 aa11.4□□□□□ -0.58
SNX1-202ENST00000380285 PDE4CQ08493 712 aa11.4□□□□□ -0.58
SNX1-202ENST00000380285 CT47A1Q5JQC4 288 aaPredicted RBP11.4□□□□□ -0.58
SNX1-202ENST00000380285 ZSCAN31Q96LW9 406 aaPredicted RBP11.4□□□□□ -0.58
SNX1-202ENST00000380285 GAS2L2Q8NHY3 880 aa11.4□□□□□ -0.59
SNX1-202ENST00000380285 UQCRHLA0A096LP55 91 aa11.39□□□□□ -0.59
SNX1-202ENST00000380285 UQCRHP07919 91 aa11.39□□□□□ -0.59
SNX1-202ENST00000380285 CFAP45Q9UL16 551 aa11.39□□□□□ -0.59
SNX1-202ENST00000380285 GNAI2P04899 355 aa11.39□□□□□ -0.59
SNX1-202ENST00000380285 IGF1RP08069 1367 aa11.39□□□□□ -0.59
SNX1-202ENST00000380285 EIF2S2P20042 333 aaKnown RBP11.39□□□□□ -0.59
SNX1-202ENST00000380285 AKNAQ7Z591 1439 aa11.39□□□□□ -0.59
SNX1-202ENST00000380285 ODF2Q5BJF6 829 aa11.39□□□□□ -0.59
SNX1-202ENST00000380285 PATL2C9JE40 543 aaKnown RBP11.39□□□□□ -0.59
SNX1-202ENST00000380285 TNMDQ9H2S6 317 aa11.39□□□□□ -0.59
SNX1-202ENST00000380285 CYP46A1Q9Y6A2 500 aa11.38□□□□□ -0.59
SNX1-202ENST00000380285 MCM5P33992 734 aa11.38□□□□□ -0.59
SNX1-202ENST00000380285 VPS37DQ86XT2 251 aa11.38□□□□□ -0.59
SNX1-202ENST00000380285 TCP11L2Q8N4U5 519 aa11.38□□□□□ -0.59
SNX1-202ENST00000380285 MINK1Q8N4C8 1332 aaPredicted RBP11.38□□□□□ -0.59
SNX1-202ENST00000380285 PNISRQ8TF01 805 aaKnown RBP11.38□□□□□ -0.59
SNX1-202ENST00000380285 GBP3Q9H0R5 595 aa11.38□□□□□ -0.59
SNX1-202ENST00000380285 STIM1Q13586 685 aa11.38□□□□□ -0.59
SNX1-202ENST00000380285 MVPQ14764 893 aaKnown RBP11.37□□□□□ -0.59
SNX1-202ENST00000380285 DHX29Q7Z478 1369 aaKnown RBP11.37□□□□□ -0.59
SNX1-202ENST00000380285 CCDC43Q96MW1 224 aaKnown RBP11.37□□□□□ -0.59
SNX1-202ENST00000380285 FSD1Q9BTV5 496 aa11.37□□□□□ -0.59
SNX1-202ENST00000380285 PPFIBP1Q86W92 1011 aa11.37□□□□□ -0.59
SNX1-202ENST00000380285 SMTNL1A8MU46 457 aa11.36□□□□□ -0.59
SNX1-202ENST00000380285 STK38Q15208 465 aa11.36□□□□□ -0.59
SNX1-202ENST00000380285 AXDND1Q5T1B0 1012 aaPredicted RBP11.36□□□□□ -0.59
SNX1-202ENST00000380285 TBC1D2BQ9UPU7 963 aa11.36□□□□□ -0.59
SNX1-202ENST00000380285 MCM3P25205 808 aa11.36□□□□□ -0.59
SNX1-202ENST00000380285 KRT32Q14532 448 aa11.36□□□□□ -0.59
SNX1-202ENST00000380285 SLC3A2P08195 630 aaKnown RBP11.36□□□□□ -0.59
SNX1-202ENST00000380285 ATF7IPQ6VMQ6 1270 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 CEP57L1Q8IYX8 460 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 CDKL5O76039 1030 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 RIC3Q7Z5B4 369 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 PPP6R1Q9UPN7 881 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 HSP90AB2PQ58FF8 381 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 LRRCC1Q9C099 1032 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 DEF6Q9H4E7 631 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 FIBPO43427 364 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 SERPINC1P01008 464 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 MTHFSP49914 203 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 CHD1LQ86WJ1 897 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 FAM107BQ9H098 131 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 INCENPQ9NQS7 918 aa11.35□□□□□ -0.59
SNX1-202ENST00000380285 CTDP1Q9Y5B0 961 aaPredicted RBP11.34□□□□□ -0.59
SNX1-202ENST00000380285 WDR97A6NE52 1622 aa11.34□□□□□ -0.59
SNX1-202ENST00000380285 PDCL3Q9H2J4 239 aa11.34□□□□□ -0.59
SNX1-202ENST00000380285 ANKRD18AQ8IVF6 992 aa11.34□□□□□ -0.59
SNX1-202ENST00000380285 ERBINQ96RT1 1412 aa11.34□□□□□ -0.59
SNX1-202ENST00000380285 NUTM2DQ5VT03 806 aaPredicted RBP11.34□□□□□ -0.59
SNX1-202ENST00000380285 WASHC4Q2M389 1173 aa11.33□□□□□ -0.59
SNX1-202ENST00000380285 ARHGAP5Q13017 1502 aa11.33□□□□□ -0.6
SNX1-202ENST00000380285 NEMFO60524 1076 aa11.33□□□□□ -0.6
SNX1-202ENST00000380285 TWISTNBQ3B726 338 aaPredicted RBP11.33□□□□□ -0.6
SNX1-202ENST00000380285 SURF6O75683 361 aaKnown RBP11.33□□□□□ -0.6
SNX1-202ENST00000380285 CCDC9Q9Y3X0 531 aaKnown RBP11.33□□□□□ -0.6
SNX1-202ENST00000380285 TOP2BQ02880 1626 aa11.33□□□□□ -0.6
SNX1-202ENST00000380285 NUP62CLQ9H1M0 184 aa11.33□□□□□ -0.6
SNX1-202ENST00000380285 CCDC27Q2M243 656 aa11.33□□□□□ -0.6
SNX1-202ENST00000380285 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.33□□□□□ -0.62e-6■■□□□ 13.8
SNX1-202ENST00000380285 TRIM22Q8IYM9 498 aa11.32□□□□□ -0.6
SNX1-202ENST00000380285 FBXW7Q969H0 707 aa11.32□□□□□ -0.6
SNX1-202ENST00000380285 NOB1Q9ULX3 412 aaKnown RBP11.32□□□□□ -0.6
SNX1-202ENST00000380285 MAP9Q49MG5 647 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms