RNA–Protein interactions for RNA: ENST00000377342.9

CBWD3-202, Transcript of COBW domain containing 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CBWD3, Length 1,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-202ENST00000377342 XPCQ01831 940 aaPredicted RBP29.27■■■□□ 2.28
CBWD3-202ENST00000377342 USP54Q70EL1 1684 aa29.27■■■□□ 2.28
CBWD3-202ENST00000377342 PHLPP1O60346 1717 aa29.25■■■□□ 2.27
CBWD3-202ENST00000377342 BRD4O60885 1362 aaPredicted RBP29.25■■■□□ 2.27
CBWD3-202ENST00000377342 COL16A1Q07092 1604 aaPredicted RBP29.25■■■□□ 2.27
CBWD3-202ENST00000377342 PIP4K2BP78356 416 aa29.25■■■□□ 2.27
CBWD3-202ENST00000377342 TTC21BQ7Z4L5 1316 aa29.24■■■□□ 2.27
CBWD3-202ENST00000377342 PSME1Q06323 249 aa29.24■■■□□ 2.27
CBWD3-202ENST00000377342 AMER1Q5JTC6 1135 aaPredicted RBP29.24■■■□□ 2.27
CBWD3-202ENST00000377342 SOS2Q07890 1332 aaPredicted RBP29.23■■■□□ 2.27
CBWD3-202ENST00000377342 KRT28Q7Z3Y7 464 aa29.22■■■□□ 2.27
CBWD3-202ENST00000377342 KNSTRNQ9Y448 316 aa29.22■■■□□ 2.27
CBWD3-202ENST00000377342 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.21■■■□□ 2.27
CBWD3-202ENST00000377342 SBNO1A3KN83 1393 aa29.2■■■□□ 2.27
CBWD3-202ENST00000377342 NPC1L1Q9UHC9 1359 aa29.2■■■□□ 2.27
CBWD3-202ENST00000377342 CGNL1Q0VF96 1302 aa29.2■■■□□ 2.26
CBWD3-202ENST00000377342 TTC21AQ8NDW8 1320 aa29.2■■■□□ 2.26
CBWD3-202ENST00000377342 TNS3Q68CZ2 1445 aa29.19■■■□□ 2.26
CBWD3-202ENST00000377342 SCAF1Q9H7N4 1312 aaKnown RBP29.19■■■□□ 2.26
CBWD3-202ENST00000377342 CRYBG1Q9Y4K1 1723 aa29.18■■■□□ 2.26
CBWD3-202ENST00000377342 NME9Q86XW9 330 aa29.18■■■□□ 2.26
CBWD3-202ENST00000377342 NSD2O96028 1365 aa29.17■■■□□ 2.26
CBWD3-202ENST00000377342 OVOS2A0A0J9YW53 1432 aa29.17■■■□□ 2.26
CBWD3-202ENST00000377342 OVOS2Q6IE36 1432 aa29.17■■■□□ 2.26
CBWD3-202ENST00000377342 FYB1O15117 783 aa29.16■■■□□ 2.26
CBWD3-202ENST00000377342 DIEXFQ68CQ4 756 aaKnown RBP29.16■■■□□ 2.26
CBWD3-202ENST00000377342 PAK3O75914 559 aaPredicted RBP29.14■■■□□ 2.26
CBWD3-202ENST00000377342 ZRANB1Q9UGI0 708 aa29.14■■■□□ 2.26
CBWD3-202ENST00000377342 MED1Q15648 1581 aaPredicted RBP29.13■■■□□ 2.25
CBWD3-202ENST00000377342 SPATA31A3Q5VYP0 1347 aa29.13■■■□□ 2.25
CBWD3-202ENST00000377342 ABCA3Q99758 1704 aa29.13■■■□□ 2.25
CBWD3-202ENST00000377342 GGNBP2Q9H3C7 697 aa29.12■■■□□ 2.25
CBWD3-202ENST00000377342 USP31Q70CQ4 1352 aa29.12■■■□□ 2.25
CBWD3-202ENST00000377342 CC2D1BQ5T0F9 858 aaKnown RBP29.12■■■□□ 2.25
CBWD3-202ENST00000377342 PHRF1Q9P1Y6 1649 aaKnown RBP29.12■■■□□ 2.25
CBWD3-202ENST00000377342 PARD3Q8TEW0 1356 aa29.09■■■□□ 2.25
CBWD3-202ENST00000377342 COL22A1Q8NFW1 1626 aaPredicted RBP29.09■■■□□ 2.25
CBWD3-202ENST00000377342 CNGB1Q14028 1251 aaPredicted RBP29.09■■■□□ 2.25
CBWD3-202ENST00000377342 ABTB2Q8N961 1025 aa29.09■■■□□ 2.25
CBWD3-202ENST00000377342 SLIT3O75094 1523 aa29.08■■■□□ 2.25
CBWD3-202ENST00000377342 ARHGEF10O15013 1369 aa29.07■■■□□ 2.24
CBWD3-202ENST00000377342 NUTM2GQ5VZR2 741 aa29.05■■■□□ 2.24
CBWD3-202ENST00000377342 SHPRHQ149N8 1683 aa29.05■■■□□ 2.24
CBWD3-202ENST00000377342 PRKRIP1Q9H875 184 aaPredicted RBP29.04■■■□□ 2.24
CBWD3-202ENST00000377342 USP19O94966 1318 aa29.04■■■□□ 2.24
CBWD3-202ENST00000377342 NFAT5O94916 1531 aa29.03■■■□□ 2.24
CBWD3-202ENST00000377342 NLRP6P59044 892 aa29.03■■■□□ 2.24
CBWD3-202ENST00000377342 LMOD2Q6P5Q4 547 aa29.02■■■□□ 2.24
CBWD3-202ENST00000377342 COG3Q96JB2 828 aa29.02■■■□□ 2.24
CBWD3-202ENST00000377342 PNPLA6Q8IY17 1366 aa29.02■■■□□ 2.24
CBWD3-202ENST00000377342 LRRC59Q96AG4 307 aaKnown RBP29■■■□□ 2.23
CBWD3-202ENST00000377342 MAP2P11137 1827 aaKnown RBP29■■■□□ 2.23
CBWD3-202ENST00000377342 MORC1Q86VD1 984 aa28.99■■■□□ 2.23
CBWD3-202ENST00000377342 LTN1O94822 1766 aa28.99■■■□□ 2.23
CBWD3-202ENST00000377342 NLRP13Q86W25 1043 aa28.99■■■□□ 2.23
CBWD3-202ENST00000377342 ANP32CO43423 234 aa28.98■■■□□ 2.23
CBWD3-202ENST00000377342 HSPA1LP34931 641 aa28.97■■■□□ 2.23
CBWD3-202ENST00000377342 RALBP1Q15311 655 aa28.96■■■□□ 2.23
CBWD3-202ENST00000377342 PEAK1Q9H792 1746 aa28.95■■■□□ 2.22
CBWD3-202ENST00000377342 TNNT2P45379 298 aaPredicted RBP28.94■■■□□ 2.22
CBWD3-202ENST00000377342 AATKQ6ZMQ8 1374 aa28.94■■■□□ 2.22
CBWD3-202ENST00000377342 FBLN1P23142 703 aa28.93■■■□□ 2.22
CBWD3-202ENST00000377342 CABLES1Q8TDN4 633 aa28.93■■■□□ 2.22
CBWD3-202ENST00000377342 SMG6Q86US8 1419 aaKnown RBP28.93■■■□□ 2.22
CBWD3-202ENST00000377342 PLEKHG5O94827 1062 aa28.91■■■□□ 2.22
CBWD3-202ENST00000377342 JCADQ9P266 1359 aa28.9■■■□□ 2.22
CBWD3-202ENST00000377342 SOX12O15370 315 aa28.9■■■□□ 2.22
CBWD3-202ENST00000377342 PPP2R1AP30153 589 aa28.9■■■□□ 2.22
CBWD3-202ENST00000377342 FBXO41Q8TF61 875 aa28.9■■■□□ 2.22
CBWD3-202ENST00000377342 MYBBP1AQ9BQG0 1328 aaKnown RBP28.9■■■□□ 2.22
CBWD3-202ENST00000377342 GCP02774 474 aa28.88■■■□□ 2.21
CBWD3-202ENST00000377342 MIER1Q8N108 512 aa28.88■■■□□ 2.21
CBWD3-202ENST00000377342 KCNH5Q8NCM2 988 aa28.86■■■□□ 2.21
CBWD3-202ENST00000377342 COL18A1P39060 1754 aa28.86■■■□□ 2.21
CBWD3-202ENST00000377342 RRS1Q15050 365 aaKnown RBP28.85■■■□□ 2.21
CBWD3-202ENST00000377342 CDK12Q9NYV4 1490 aaPredicted RBP28.84■■■□□ 2.21
CBWD3-202ENST00000377342 MAP3K19Q56UN5 1328 aa28.84■■■□□ 2.21
CBWD3-202ENST00000377342 POLKQ9UBT6 870 aa28.83■■■□□ 2.21
CBWD3-202ENST00000377342 EMILIN1Q9Y6C2 1016 aa28.83■■■□□ 2.21
CBWD3-202ENST00000377342 RGPD5Q99666 1765 aa28.82■■■□□ 2.2
CBWD3-202ENST00000377342 LMO7Q8WWI1 1683 aa28.82■■■□□ 2.2
CBWD3-202ENST00000377342 COL3A1P02461 1466 aaPredicted RBP28.82■■■□□ 2.2
CBWD3-202ENST00000377342 CPDO75976 1380 aa28.82■■■□□ 2.2
CBWD3-202ENST00000377342 LRP6O75581 1613 aa28.81■■■□□ 2.2
CBWD3-202ENST00000377342 ABCC6O95255 1503 aa28.8■■■□□ 2.2
CBWD3-202ENST00000377342 ARHGEF25Q86VW2 580 aa28.8■■■□□ 2.2
CBWD3-202ENST00000377342 KIAA0232Q92628 1395 aa28.8■■■□□ 2.2
CBWD3-202ENST00000377342 MTHFSP49914 203 aa28.79■■■□□ 2.2
CBWD3-202ENST00000377342 RTL1A6NKG5 1358 aa28.78■■■□□ 2.2
CBWD3-202ENST00000377342 ZC3H6P61129 1189 aaKnown RBP28.78■■■□□ 2.2
CBWD3-202ENST00000377342 CCDC184Q52MB2 194 aa28.77■■■□□ 2.2
CBWD3-202ENST00000377342 KIF24Q5T7B8 1368 aa28.77■■■□□ 2.2
CBWD3-202ENST00000377342 COL14A1Q05707 1796 aaKnown RBP28.77■■■□□ 2.2
CBWD3-202ENST00000377342 FLT4P35916 1363 aa28.76■■■□□ 2.19
CBWD3-202ENST00000377342 PLCH1Q4KWH8 1693 aa28.76■■■□□ 2.19
CBWD3-202ENST00000377342 HAP1P54257 671 aaPredicted RBP28.75■■■□□ 2.19
CBWD3-202ENST00000377342 SPATA31A6Q5VVP1 1343 aa28.75■■■□□ 2.19
CBWD3-202ENST00000377342 INSRP06213 1382 aa28.73■■■□□ 2.19
CBWD3-202ENST00000377342 PPM1GO15355 546 aaPredicted RBP28.73■■■□□ 2.19
CBWD3-202ENST00000377342 HOXC9P31274 260 aa28.72■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms