RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 STK26Q9P289 416 aa18.09■□□□□ 0.49
COL5A1-201ENST00000371817 PTPN14Q15678 1187 aa18.09■□□□□ 0.49
COL5A1-201ENST00000371817 CCDC148Q8NFR7 591 aa18.09■□□□□ 0.49
COL5A1-201ENST00000371817 GTF2F1P35269 517 aaKnown RBP eCLIP18.09■□□□□ 0.49
COL5A1-201ENST00000371817 RNF187Q5TA31 235 aaPredicted RBP18.09■□□□□ 0.49
COL5A1-201ENST00000371817 POLR3GO15318 223 aaPredicted RBP18.08■□□□□ 0.49
COL5A1-201ENST00000371817 FOXD1Q16676 465 aa18.08■□□□□ 0.49
COL5A1-201ENST00000371817 NGEFQ8N5V2 710 aa18.08■□□□□ 0.48
COL5A1-201ENST00000371817 DHX16O60231 1041 aaKnown RBP18.08■□□□□ 0.48
COL5A1-201ENST00000371817 PKD2Q13563 968 aa18.08■□□□□ 0.48
COL5A1-201ENST00000371817 BCCIPQ9P287 314 aaKnown RBP eCLIP18.08■□□□□ 0.48
COL5A1-201ENST00000371817 FILIP1Q7Z7B0 1213 aa18.07■□□□□ 0.48
COL5A1-201ENST00000371817 MPNDQ8N594 471 aa18.07■□□□□ 0.48
COL5A1-201ENST00000371817 JMYQ8N9B5 988 aa18.07■□□□□ 0.48
COL5A1-201ENST00000371817 CLGNO14967 610 aa18.07■□□□□ 0.48
COL5A1-201ENST00000371817 STIM1Q13586 685 aa18.07■□□□□ 0.48
COL5A1-201ENST00000371817 KIAA1328Q86T90 577 aa18.07■□□□□ 0.48
COL5A1-201ENST00000371817 CFAP57Q96MR6 1250 aa18.07■□□□□ 0.48
COL5A1-201ENST00000371817 PRKRIP1Q9H875 184 aaPredicted RBP18.06■□□□□ 0.48
COL5A1-201ENST00000371817 STAMBPO95630 424 aa18.05■□□□□ 0.48
COL5A1-201ENST00000371817 NBPF1Q3BBV0 1214 aa18.05■□□□□ 0.48
COL5A1-201ENST00000371817 WDR33Q9C0J8 1336 aaKnown RBP18.05■□□□□ 0.48
COL5A1-201ENST00000371817 CTR9Q6PD62 1173 aa18.04■□□□□ 0.48
COL5A1-201ENST00000371817 JAKMIP3Q5VZ66 844 aa18.04■□□□□ 0.48
COL5A1-201ENST00000371817 RAD21O60216 631 aa18.04■□□□□ 0.48
COL5A1-201ENST00000371817 MPHOSPH9Q99550 1183 aa18.04■□□□□ 0.48
COL5A1-201ENST00000371817 CSB-PGBD3P0DP91 1061 aa18.04■□□□□ 0.48
COL5A1-201ENST00000371817 CASQ1P31415 396 aa18.04■□□□□ 0.48
COL5A1-201ENST00000371817 NEK4P51957 841 aa18.03■□□□□ 0.48
COL5A1-201ENST00000371817 ARHGAP29Q52LW3 1261 aa18.03■□□□□ 0.48
COL5A1-201ENST00000371817 CPSF2Q9P2I0 782 aaKnown RBP18.03■□□□□ 0.48
COL5A1-201ENST00000371817 EPB41L2O43491 1005 aaKnown RBP18.03■□□□□ 0.48
COL5A1-201ENST00000371817 CCDC175P0C221 793 aa18.03■□□□□ 0.48
COL5A1-201ENST00000371817 FMN1Q68DA7 1419 aa18.03■□□□□ 0.48
COL5A1-201ENST00000371817 IVLP07476 585 aa18.03■□□□□ 0.48
COL5A1-201ENST00000371817 TDO2P48775 406 aa18.03■□□□□ 0.48
COL5A1-201ENST00000371817 VPS8Q8N3P4 1428 aa18.03■□□□□ 0.48
COL5A1-201ENST00000371817 MCM4P33991 863 aa18.02■□□□□ 0.48
COL5A1-201ENST00000371817 KRT85P78386 507 aa18.02■□□□□ 0.48
COL5A1-201ENST00000371817 CNTROBQ8N137 903 aa18.02■□□□□ 0.48
COL5A1-201ENST00000371817 WRNQ14191 1432 aaPredicted RBP eCLIP18.02■□□□□ 0.47
COL5A1-201ENST00000371817 CTDP1Q9Y5B0 961 aaPredicted RBP18.02■□□□□ 0.47
COL5A1-201ENST00000371817 API5Q9BZZ5 524 aaKnown RBP18.01■□□□□ 0.47
COL5A1-201ENST00000371817 ELL2O00472 640 aaPredicted RBP18.01■□□□□ 0.47
COL5A1-201ENST00000371817 GTF2E1P29083 439 aaPredicted RBP18.01■□□□□ 0.47
COL5A1-201ENST00000371817 SEPT6Q14141 434 aa18.01■□□□□ 0.47
COL5A1-201ENST00000371817 CDK5RAP3Q96JB5 506 aa18.01■□□□□ 0.47
COL5A1-201ENST00000371817 ERCC6Q03468 1493 aa18.01■□□□□ 0.47
COL5A1-201ENST00000371817 KIF3BO15066 747 aa18.01■□□□□ 0.47
COL5A1-201ENST00000371817 ZSCAN12O43309 604 aa18.01■□□□□ 0.47
COL5A1-201ENST00000371817 G3BP1Q13283 466 aaKnown RBP eCLIP18.01■□□□□ 0.47
COL5A1-201ENST00000371817 DAAM2Q86T65 1068 aa18.01■□□□□ 0.47
COL5A1-201ENST00000371817 STK38Q15208 465 aa18■□□□□ 0.47
COL5A1-201ENST00000371817 HSP90AB4PQ58FF6 505 aa18■□□□□ 0.47
COL5A1-201ENST00000371817 LMAN1P49257 510 aa18■□□□□ 0.47
COL5A1-201ENST00000371817 K7ELQ4 463 aaPredicted RBP18■□□□□ 0.47
COL5A1-201ENST00000371817 CEBPZQ03701 1054 aaKnown RBP18■□□□□ 0.47
COL5A1-201ENST00000371817 IMMTQ16891 758 aaKnown RBP18■□□□□ 0.47
COL5A1-201ENST00000371817 CIZ1Q9ULV3 898 aaPredicted RBP17.99■□□□□ 0.47
COL5A1-201ENST00000371817 ME1P48163 572 aa17.99■□□□□ 0.47
COL5A1-201ENST00000371817 SMC1AQ14683 1233 aaKnown RBP17.99■□□□□ 0.47
COL5A1-201ENST00000371817 GIGYF2Q6Y7W6 1299 aaKnown RBP17.99■□□□□ 0.47
COL5A1-201ENST00000371817 CCDC113Q9H0I3 377 aa17.99■□□□□ 0.47
COL5A1-201ENST00000371817 SPDYE4A6NLX3 237 aa17.99■□□□□ 0.47
COL5A1-201ENST00000371817 KIF5CO60282 957 aa17.99■□□□□ 0.47
COL5A1-201ENST00000371817 SPECC1LQ69YQ0 1117 aa17.99■□□□□ 0.47
COL5A1-201ENST00000371817 CEP57L1Q8IYX8 460 aa17.99■□□□□ 0.47
COL5A1-201ENST00000371817 GCOM1H8Y6P7 765 aaPredicted RBP17.98■□□□□ 0.47
COL5A1-201ENST00000371817 MYZAPP0CAP1 466 aa17.98■□□□□ 0.47
COL5A1-201ENST00000371817 SMTNL1A8MU46 457 aa17.98■□□□□ 0.47
COL5A1-201ENST00000371817 WDR66Q8TBY9 1149 aa17.98■□□□□ 0.47
COL5A1-201ENST00000371817 SMARCC1Q92922 1105 aaPredicted RBP17.98■□□□□ 0.47
COL5A1-201ENST00000371817 SFPQP23246 707 aaKnown RBP eCLIP17.98■□□□□ 0.47
COL5A1-201ENST00000371817 AMPHP49418 695 aa17.97■□□□□ 0.47
COL5A1-201ENST00000371817 BACH2Q9BYV9 841 aa17.97■□□□□ 0.47
COL5A1-201ENST00000371817 GTPBP4Q9BZE4 634 aaKnown RBP17.97■□□□□ 0.47
COL5A1-201ENST00000371817 POTEB2H3BUK9 544 aa17.97■□□□□ 0.47
COL5A1-201ENST00000371817 IFFO1Q0D2I5 559 aa17.97■□□□□ 0.47
COL5A1-201ENST00000371817 VPS37DQ86XT2 251 aa17.97■□□□□ 0.47
COL5A1-201ENST00000371817 KRT222Q8N1A0 295 aa17.97■□□□□ 0.47
COL5A1-201ENST00000371817 UPF3BQ9BZI7 483 aaKnown RBP17.97■□□□□ 0.47
COL5A1-201ENST00000371817 MCM5P33992 734 aa17.96■□□□□ 0.47
COL5A1-201ENST00000371817 SYCE3A1L190 88 aa17.96■□□□□ 0.47
COL5A1-201ENST00000371817 HSPA4P34932 840 aa17.96■□□□□ 0.47
COL5A1-201ENST00000371817 NUP62CLQ9H1M0 184 aa17.96■□□□□ 0.47
COL5A1-201ENST00000371817 SART3Q15020 963 aaKnown RBP17.96■□□□□ 0.47
COL5A1-201ENST00000371817 BMS1Q14692 1282 aaKnown RBP17.96■□□□□ 0.47
COL5A1-201ENST00000371817 ANKRD1Q15327 319 aa17.96■□□□□ 0.47
COL5A1-201ENST00000371817 ZNF397Q8NF99 534 aaPredicted RBP17.95■□□□□ 0.46
COL5A1-201ENST00000371817 PANK3Q9H999 370 aa17.95■□□□□ 0.46
COL5A1-201ENST00000371817 TAF4BQ92750 862 aa17.95■□□□□ 0.46
COL5A1-201ENST00000371817 ANKRD30AQ9BXX3 1397 aa17.95■□□□□ 0.46
COL5A1-201ENST00000371817 XPCQ01831 940 aaPredicted RBP17.95■□□□□ 0.46
COL5A1-201ENST00000371817 PRIMPOLQ96LW4 560 aa17.95■□□□□ 0.46
COL5A1-201ENST00000371817 TMCO5BA8MYB1 307 aa17.94■□□□□ 0.46
COL5A1-201ENST00000371817 TTC31Q49AM3 519 aaPredicted RBP17.94■□□□□ 0.46
COL5A1-201ENST00000371817 L3MBTL2Q969R5 705 aa17.94■□□□□ 0.46
COL5A1-201ENST00000371817 FEZ1Q99689 392 aa17.94■□□□□ 0.46
COL5A1-201ENST00000371817 HIP1O00291 1037 aa17.94■□□□□ 0.46
COL5A1-201ENST00000371817 NUP155O75694 1391 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms