RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 ACBD3Q9H3P7 528 aa19.1■□□□□ 0.65
COL17A1-202ENST00000369733 PDCP20941 246 aa19.1■□□□□ 0.65
COL17A1-202ENST00000369733 SURF6O75683 361 aaKnown RBP19.09■□□□□ 0.65
COL17A1-202ENST00000369733 ANKRD30BQ9BXX2 1392 aa19.09■□□□□ 0.65
COL17A1-202ENST00000369733 NCAPD3P42695 1498 aa19.09■□□□□ 0.65
COL17A1-202ENST00000369733 HSP90B2PQ58FF3 399 aa19.09■□□□□ 0.65
COL17A1-202ENST00000369733 PCMTD1Q96MG8 357 aaPredicted RBP19.08■□□□□ 0.65
COL17A1-202ENST00000369733 PDE4CQ08493 712 aa19.08■□□□□ 0.64
COL17A1-202ENST00000369733 TRDNQ13061 729 aa19.08■□□□□ 0.64
COL17A1-202ENST00000369733 NKTRP30414 1462 aaKnown RBP19.07■□□□□ 0.64
COL17A1-202ENST00000369733 KINO60870 393 aaKnown RBP19.07■□□□□ 0.64
COL17A1-202ENST00000369733 PCF11O94913 1555 aaKnown RBP19.07■□□□□ 0.64
COL17A1-202ENST00000369733 SMC2O95347 1197 aa19.07■□□□□ 0.64
COL17A1-202ENST00000369733 CCDC112Q8NEF3 446 aa19.07■□□□□ 0.64
COL17A1-202ENST00000369733 CWC15Q9P013 229 aaKnown RBP19.07■□□□□ 0.64
COL17A1-202ENST00000369733 SYCE3A1L190 88 aa19.07■□□□□ 0.64
COL17A1-202ENST00000369733 GNAI2P04899 355 aa19.07■□□□□ 0.64
COL17A1-202ENST00000369733 PDILTQ8N807 584 aa19.07■□□□□ 0.64
COL17A1-202ENST00000369733 AQRO60306 1485 aaKnown RBP eCLIP19.07■□□□□ 0.64
COL17A1-202ENST00000369733 HECW1Q76N89 1606 aa19.07■□□□□ 0.64
COL17A1-202ENST00000369733 APPP05067 770 aa19.07■□□□□ 0.64
COL17A1-202ENST00000369733 OLFM4Q6UX06 510 aa19.07■□□□□ 0.64
COL17A1-202ENST00000369733 CLASRPQ8N2M8 674 aaKnown RBP19.06■□□□□ 0.64
COL17A1-202ENST00000369733 ARHGAP5Q13017 1502 aa19.06■□□□□ 0.64
COL17A1-202ENST00000369733 TMEM57Q8N5G2 664 aa19.06■□□□□ 0.64
COL17A1-202ENST00000369733 FSD1Q9BTV5 496 aa19.06■□□□□ 0.64
COL17A1-202ENST00000369733 MARCH6O60337 910 aa19.05■□□□□ 0.64
COL17A1-202ENST00000369733 NFXL1Q6ZNB6 911 aa19.04■□□□□ 0.64
COL17A1-202ENST00000369733 AEBP1Q8IUX7 1158 aa19.04■□□□□ 0.64
COL17A1-202ENST00000369733 RARSP54136 660 aaKnown RBP19.04■□□□□ 0.64
COL17A1-202ENST00000369733 CCDC30Q5VVM6 783 aa19.04■□□□□ 0.64
COL17A1-202ENST00000369733 TNMDQ9H2S6 317 aa19.04■□□□□ 0.64
COL17A1-202ENST00000369733 LRPPRCP42704 1394 aaKnown RBP19.04■□□□□ 0.64
COL17A1-202ENST00000369733 TNPO1Q92973 898 aaKnown RBP19.04■□□□□ 0.64
COL17A1-202ENST00000369733 TTC5Q8N0Z6 440 aa19.04■□□□□ 0.64
COL17A1-202ENST00000369733 MAP3K1Q13233 1512 aa19.03■□□□□ 0.64
COL17A1-202ENST00000369733 CCP110O43303 1012 aa19.03■□□□□ 0.64
COL17A1-202ENST00000369733 LRRCC1Q9C099 1032 aa19.03■□□□□ 0.64
COL17A1-202ENST00000369733 UBE2Q2Q8WVN8 375 aa19.03■□□□□ 0.64
COL17A1-202ENST00000369733 AK7Q96M32 723 aa19.03■□□□□ 0.64
COL17A1-202ENST00000369733 PRG4Q92954 1404 aaPredicted RBP19.03■□□□□ 0.64
COL17A1-202ENST00000369733 DUSP27Q5VZP5 1158 aa19.02■□□□□ 0.64
COL17A1-202ENST00000369733 FMNL2Q96PY5 1086 aa19.02■□□□□ 0.64
COL17A1-202ENST00000369733 SLC4A2P04920 1241 aa19.02■□□□□ 0.64
COL17A1-202ENST00000369733 CEP89Q96ST8 783 aa19.02■□□□□ 0.64
COL17A1-202ENST00000369733 CYP46A1Q9Y6A2 500 aa19.02■□□□□ 0.64
COL17A1-202ENST00000369733 RUFY1Q96T51 708 aa19.02■□□□□ 0.63
COL17A1-202ENST00000369733 PDCL3Q9H2J4 239 aa19.01■□□□□ 0.63
COL17A1-202ENST00000369733 SAFBQ15424 915 aaKnown RBP eCLIP19.01■□□□□ 0.63
COL17A1-202ENST00000369733 CEBPZQ03701 1054 aaKnown RBP19.01■□□□□ 0.63
COL17A1-202ENST00000369733 KRT85P78386 507 aa19.01■□□□□ 0.63
COL17A1-202ENST00000369733 RALYLQ86SE5 291 aaKnown RBP19.01■□□□□ 0.63
COL17A1-202ENST00000369733 MAPKBP1O60336 1514 aa19■□□□□ 0.63
COL17A1-202ENST00000369733 SSFA2P28290 1259 aa19■□□□□ 0.63
COL17A1-202ENST00000369733 XPCQ01831 940 aaPredicted RBP19■□□□□ 0.63
COL17A1-202ENST00000369733 TROQ12816 1431 aaPredicted RBP19■□□□□ 0.63
COL17A1-202ENST00000369733 PDCL2Q8N4E4 241 aa19■□□□□ 0.63
COL17A1-202ENST00000369733 CCDC47Q96A33 483 aaKnown RBP19■□□□□ 0.63
COL17A1-202ENST00000369733 PTPN23Q9H3S7 1636 aa19■□□□□ 0.63
COL17A1-202ENST00000369733 HIP1O00291 1037 aa19■□□□□ 0.63
COL17A1-202ENST00000369733 CCT4P50991 539 aaKnown RBP19■□□□□ 0.63
COL17A1-202ENST00000369733 NEUROD6Q96NK8 337 aa18.99■□□□□ 0.63
COL17A1-202ENST00000369733 ZNF396Q96N95 335 aaPredicted RBP18.99■□□□□ 0.63
COL17A1-202ENST00000369733 RIC3Q7Z5B4 369 aa18.98■□□□□ 0.63
COL17A1-202ENST00000369733 AIMP1Q12904 312 aaKnown RBP18.97■□□□□ 0.63
COL17A1-202ENST00000369733 ERCC4Q92889 916 aaPredicted RBP18.97■□□□□ 0.63
COL17A1-202ENST00000369733 TBC1D32Q96NH3 1257 aa18.97■□□□□ 0.63
COL17A1-202ENST00000369733 LARP1BQ659C4 914 aaKnown RBP18.97■□□□□ 0.63
COL17A1-202ENST00000369733 ZNF428Q96B54 188 aa18.97■□□□□ 0.63
COL17A1-202ENST00000369733 IGHDP01880 384 aa18.97■□□□□ 0.63
COL17A1-202ENST00000369733 AFAP1Q8N556 730 aa18.97■□□□□ 0.63
COL17A1-202ENST00000369733 MAP4K4O95819 1239 aaPredicted RBP18.97■□□□□ 0.63
COL17A1-202ENST00000369733 TMPOP42166 694 aaKnown RBP18.97■□□□□ 0.63
COL17A1-202ENST00000369733 PRDM10Q9NQV6 1147 aa18.97■□□□□ 0.63
COL17A1-202ENST00000369733 WASHC4Q2M389 1173 aa18.96■□□□□ 0.63
COL17A1-202ENST00000369733 PATL2C9JE40 543 aaKnown RBP18.96■□□□□ 0.63
COL17A1-202ENST00000369733 NUP62CLQ9H1M0 184 aa18.96■□□□□ 0.63
COL17A1-202ENST00000369733 SRCIN1Q9C0H9 1055 aa18.96■□□□□ 0.63
COL17A1-202ENST00000369733 ERICH2A1L162 156 aa18.95■□□□□ 0.62
COL17A1-202ENST00000369733 STK3Q13188 491 aa18.95■□□□□ 0.62
COL17A1-202ENST00000369733 GAS2L2Q8NHY3 880 aa18.95■□□□□ 0.62
COL17A1-202ENST00000369733 NSD3Q9BZ95 1437 aa18.95■□□□□ 0.62
COL17A1-202ENST00000369733 TTLL5Q6EMB2 1281 aa18.95■□□□□ 0.62
COL17A1-202ENST00000369733 RPAP2Q8IXW5 612 aaPredicted RBP18.95■□□□□ 0.62
COL17A1-202ENST00000369733 ANKRD1Q15327 319 aa18.95■□□□□ 0.62
COL17A1-202ENST00000369733 LEKR1Q6ZMV7 388 aa18.95■□□□□ 0.62
COL17A1-202ENST00000369733 STK38Q15208 465 aa18.95■□□□□ 0.62
COL17A1-202ENST00000369733 SSH1Q8WYL5 1049 aa18.95■□□□□ 0.62
COL17A1-202ENST00000369733 RPRD2Q5VT52 1461 aaKnown RBP18.94■□□□□ 0.62
COL17A1-202ENST00000369733 CDK13Q14004 1512 aaKnown RBP18.94■□□□□ 0.62
COL17A1-202ENST00000369733 GRIN2BQ13224 1484 aa18.94■□□□□ 0.62
COL17A1-202ENST00000369733 ERC1Q8IUD2 1116 aa18.94■□□□□ 0.62
COL17A1-202ENST00000369733 VPS53Q5VIR6 699 aa18.94■□□□□ 0.62
COL17A1-202ENST00000369733 EPRSP07814 1512 aaKnown RBP18.94■□□□□ 0.62
COL17A1-202ENST00000369733 CBX1P83916 185 aa18.94■□□□□ 0.62
COL17A1-202ENST00000369733 DHX8Q14562 1220 aaKnown RBP18.94■□□□□ 0.62
COL17A1-202ENST00000369733 SPATA32Q96LK8 384 aa18.94■□□□□ 0.62
COL17A1-202ENST00000369733 PRAM1Q96QH2 718 aa18.94■□□□□ 0.62
COL17A1-202ENST00000369733 CLCN1P35523 988 aa18.93■□□□□ 0.62
COL17A1-202ENST00000369733 CAGE1Q8TC20 777 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms