RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 TET3O43151 1660 aa12.43□□□□□ -0.42
RNF40-202ENST00000357890 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.43□□□□□ -0.42
RNF40-202ENST00000357890 C22orf23Q9BZE7 217 aa12.43□□□□□ -0.42
RNF40-202ENST00000357890 GGNBP2Q9H3C7 697 aa12.43□□□□□ -0.42
RNF40-202ENST00000357890 TNNQ9UQP3 1299 aa12.43□□□□□ -0.42
RNF40-202ENST00000357890 IPO8O15397 1037 aaKnown RBP12.43□□□□□ -0.42
RNF40-202ENST00000357890 KDM5AP29375 1690 aaKnown RBP12.43□□□□□ -0.42
RNF40-202ENST00000357890 MINK1Q8N4C8 1332 aaPredicted RBP12.43□□□□□ -0.42
RNF40-202ENST00000357890 MYOM2P54296 1465 aa12.42□□□□□ -0.42
RNF40-202ENST00000357890 SBNO2Q9Y2G9 1366 aa12.42□□□□□ -0.42
RNF40-202ENST00000357890 ELL2O00472 640 aaPredicted RBP12.42□□□□□ -0.42
RNF40-202ENST00000357890 MPNDQ8N594 471 aa12.42□□□□□ -0.42
RNF40-202ENST00000357890 CALD1Q05682 793 aaKnown RBP12.42□□□□□ -0.42
RNF40-202ENST00000357890 PCDHB15Q9Y5E8 787 aa12.42□□□□□ -0.42
RNF40-202ENST00000357890 UGGT1Q9NYU2 1555 aa12.41□□□□□ -0.42
RNF40-202ENST00000357890 SPHKAPQ2M3C7 1700 aa12.41□□□□□ -0.42
RNF40-202ENST00000357890 RNF17Q9BXT8 1623 aaKnown RBP12.41□□□□□ -0.42
RNF40-202ENST00000357890 EXOSC9Q06265 439 aaKnown RBP12.41□□□□□ -0.42
RNF40-202ENST00000357890 LNPKQ9C0E8 428 aa12.4□□□□□ -0.42
RNF40-202ENST00000357890 SLC52A1Q9NWF4 448 aa12.4□□□□□ -0.42
RNF40-202ENST00000357890 POGZQ7Z3K3 1410 aa12.4□□□□□ -0.43
RNF40-202ENST00000357890 RLBP1P12271 317 aa12.4□□□□□ -0.43
RNF40-202ENST00000357890 RIPK4P57078 832 aa12.4□□□□□ -0.43
RNF40-202ENST00000357890 DDX19BQ9UMR2 479 aa12.39□□□□□ -0.43
RNF40-202ENST00000357890 GLI2P10070 1586 aa12.39□□□□□ -0.43
RNF40-202ENST00000357890 MAPK8IP2Q13387 824 aaPredicted RBP12.39□□□□□ -0.43
RNF40-202ENST00000357890 UQCRHLA0A096LP55 91 aa12.39□□□□□ -0.43
RNF40-202ENST00000357890 UQCRHP07919 91 aa12.39□□□□□ -0.43
RNF40-202ENST00000357890 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.39□□□□□ -0.43
RNF40-202ENST00000357890 IQGAP1P46940 1657 aa12.38□□□□□ -0.43
RNF40-202ENST00000357890 DIAPH1O60610 1272 aaKnown RBP12.38□□□□□ -0.43
RNF40-202ENST00000357890 MVPQ14764 893 aaKnown RBP12.38□□□□□ -0.43
RNF40-202ENST00000357890 NSD2O96028 1365 aa12.38□□□□□ -0.43
RNF40-202ENST00000357890 FOXD4L6Q3SYB3 417 aaPredicted RBP12.38□□□□□ -0.43
RNF40-202ENST00000357890 ANKRD45Q5TZF3 282 aa12.38□□□□□ -0.43
RNF40-202ENST00000357890 FOXD4L3Q6VB84 417 aaPredicted RBP12.38□□□□□ -0.43
RNF40-202ENST00000357890 APBB1O00213 710 aa12.37□□□□□ -0.43
RNF40-202ENST00000357890 XPCQ01831 940 aaPredicted RBP12.37□□□□□ -0.43
RNF40-202ENST00000357890 PUS7Q96PZ0 661 aaKnown RBP12.37□□□□□ -0.43
RNF40-202ENST00000357890 CT47B1P0C2W7 299 aaPredicted RBP12.37□□□□□ -0.43
RNF40-202ENST00000357890 IDI1Q13907 227 aa12.37□□□□□ -0.43
RNF40-202ENST00000357890 CCDC27Q2M243 656 aa12.37□□□□□ -0.43
RNF40-202ENST00000357890 RNF214Q8ND24 703 aa12.37□□□□□ -0.43
RNF40-202ENST00000357890 MAP3K4Q9Y6R4 1608 aa12.37□□□□□ -0.43
RNF40-202ENST00000357890 PRAM1Q96QH2 718 aa12.37□□□□□ -0.43
RNF40-202ENST00000357890 CHMP4BQ9H444 224 aaKnown RBP12.36□□□□□ -0.43
RNF40-202ENST00000357890 CEP152O94986 1710 aa12.36□□□□□ -0.43
RNF40-202ENST00000357890 ANKRD36BQ8N2N9 1353 aa12.36□□□□□ -0.43
RNF40-202ENST00000357890 NPATQ14207 1427 aa12.36□□□□□ -0.43
RNF40-202ENST00000357890 BCL11BQ9C0K0 894 aaPredicted RBP12.35□□□□□ -0.43
RNF40-202ENST00000357890 NOB1Q9ULX3 412 aaKnown RBP12.35□□□□□ -0.43
RNF40-202ENST00000357890 EFCAB6Q5THR3 1501 aa12.35□□□□□ -0.43
RNF40-202ENST00000357890 CAVIN1Q6NZI2 390 aaKnown RBP12.35□□□□□ -0.43
RNF40-202ENST00000357890 SKOR2Q2VWA4 1001 aaPredicted RBP12.35□□□□□ -0.43
RNF40-202ENST00000357890 ATAD2Q6PL18 1390 aa12.35□□□□□ -0.43
RNF40-202ENST00000357890 MLH3Q9UHC1 1453 aa12.35□□□□□ -0.43
RNF40-202ENST00000357890 TMPOP42166 694 aaKnown RBP12.34□□□□□ -0.43
RNF40-202ENST00000357890 MCTP1Q6DN14 999 aa12.34□□□□□ -0.43
RNF40-202ENST00000357890 ZSCAN30Q86W11 494 aa12.34□□□□□ -0.43
RNF40-202ENST00000357890 KIF1BO60333 1816 aa12.34□□□□□ -0.43
RNF40-202ENST00000357890 MLECQ14165 292 aa12.34□□□□□ -0.43
RNF40-202ENST00000357890 ATF7IPQ6VMQ6 1270 aa12.34□□□□□ -0.43
RNF40-202ENST00000357890 TBC1D32Q96NH3 1257 aa12.34□□□□□ -0.43
RNF40-202ENST00000357890 KIAA2012Q0VF49 1180 aa12.33□□□□□ -0.43
RNF40-202ENST00000357890 SSH1Q8WYL5 1049 aa12.33□□□□□ -0.43
RNF40-202ENST00000357890 CCDC173Q0VFZ6 552 aa12.33□□□□□ -0.44
RNF40-202ENST00000357890 MAP7D2Q96T17 732 aa12.33□□□□□ -0.44
RNF40-202ENST00000357890 KIF16BQ96L93 1317 aa12.33□□□□□ -0.44
RNF40-202ENST00000357890 INO80Q9ULG1 1556 aaPredicted RBP12.33□□□□□ -0.44
RNF40-202ENST00000357890 HMOX1P09601 288 aa12.32□□□□□ -0.44
RNF40-202ENST00000357890 ABCA6Q8N139 1617 aa12.32□□□□□ -0.44
RNF40-202ENST00000357890 DIP2BQ9P265 1576 aa12.32□□□□□ -0.44
RNF40-202ENST00000357890 TRIM27P14373 513 aa12.32□□□□□ -0.44
RNF40-202ENST00000357890 NOL8Q76FK4 1167 aaKnown RBP12.32□□□□□ -0.44
RNF40-202ENST00000357890 C1orf115Q9H7X2 142 aa12.32□□□□□ -0.44
RNF40-202ENST00000357890 TMEM57Q8N5G2 664 aa12.31□□□□□ -0.44
RNF40-202ENST00000357890 PPP6R1Q9UPN7 881 aa12.31□□□□□ -0.44
RNF40-202ENST00000357890 SOX12O15370 315 aa12.31□□□□□ -0.44
RNF40-202ENST00000357890 CDK19Q9BWU1 502 aa12.31□□□□□ -0.44
RNF40-202ENST00000357890 CABP1Q9NZU7 370 aa12.31□□□□□ -0.44
RNF40-202ENST00000357890 KIAA1210Q9ULL0 1709 aa12.31□□□□□ -0.44
RNF40-202ENST00000357890 CFAP65Q6ZU64 1925 aaKnown RBP12.31□□□□□ -0.44
RNF40-202ENST00000357890 CBX1P83916 185 aa12.31□□□□□ -0.44
RNF40-202ENST00000357890 ZNF771Q7L3S4 317 aaPredicted RBP12.31□□□□□ -0.44
RNF40-202ENST00000357890 DEPDC5O75140 1603 aa12.3□□□□□ -0.44
RNF40-202ENST00000357890 CHAF1AQ13111 956 aaPredicted RBP12.3□□□□□ -0.44
RNF40-202ENST00000357890 PTMSP20962 102 aa12.3□□□□□ -0.44
RNF40-202ENST00000357890 VWDEQ8N2E2 1590 aa12.3□□□□□ -0.44
RNF40-202ENST00000357890 TNPO1Q92973 898 aaKnown RBP12.29□□□□□ -0.44
RNF40-202ENST00000357890 ABCC11Q96J66 1382 aa12.29□□□□□ -0.44
RNF40-202ENST00000357890 NCBP3Q53F19 620 aaKnown RBP12.29□□□□□ -0.44
RNF40-202ENST00000357890 FYB1O15117 783 aa12.29□□□□□ -0.44
RNF40-202ENST00000357890 PRKAR2BP31323 418 aa12.29□□□□□ -0.44
RNF40-202ENST00000357890 NEURL4Q96JN8 1562 aa12.28□□□□□ -0.44
RNF40-202ENST00000357890 PDE4CQ08493 712 aa12.28□□□□□ -0.44
RNF40-202ENST00000357890 HECW2Q9P2P5 1572 aa12.28□□□□□ -0.44
RNF40-202ENST00000357890 A0A1W2PP64 1363 aa12.28□□□□□ -0.44
RNF40-202ENST00000357890 FCHSD2O94868 740 aa12.28□□□□□ -0.44
RNF40-202ENST00000357890 CASC1Q6TDU7 716 aa12.28□□□□□ -0.44
RNF40-202ENST00000357890 BBXQ8WY36 941 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms