RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ESF1Q9H501 851 aaKnown RBP25.01■■□□□ 1.59
COL9A3-201ENST00000343916 ANKRD26Q9UPS8 1709 aa25■■□□□ 1.59
COL9A3-201ENST00000343916 CLUAP1Q96AJ1 413 aa25■■□□□ 1.59
COL9A3-201ENST00000343916 MYH16Q9H6N6 1097 aa25■■□□□ 1.59
COL9A3-201ENST00000343916 MED14O60244 1454 aa25■■□□□ 1.59
COL9A3-201ENST00000343916 ZMYM3Q14202 1370 aa25■■□□□ 1.59
COL9A3-201ENST00000343916 SETD1AO15047 1707 aaKnown RBP25■■□□□ 1.59
COL9A3-201ENST00000343916 RLBP1P12271 317 aa25■■□□□ 1.59
COL9A3-201ENST00000343916 TMPOP42166 694 aaKnown RBP24.99■■□□□ 1.59
COL9A3-201ENST00000343916 METP08581 1390 aa24.99■■□□□ 1.59
COL9A3-201ENST00000343916 PPM1GO15355 546 aaPredicted RBP24.98■■□□□ 1.59
COL9A3-201ENST00000343916 DIAPH1O60610 1272 aaKnown RBP24.97■■□□□ 1.59
COL9A3-201ENST00000343916 TXNDC2Q86VQ3 553 aa24.97■■□□□ 1.59
COL9A3-201ENST00000343916 MAPK8IP3Q9UPT6 1336 aa24.97■■□□□ 1.59
COL9A3-201ENST00000343916 DLC1Q96QB1 1528 aa24.97■■□□□ 1.59
COL9A3-201ENST00000343916 TRIM35Q9UPQ4 493 aa24.97■■□□□ 1.59
COL9A3-201ENST00000343916 NRXN3Q9Y4C0 1643 aa24.95■■□□□ 1.58
COL9A3-201ENST00000343916 C8orf34Q49A92 452 aa24.95■■□□□ 1.58
COL9A3-201ENST00000343916 NCBP3Q53F19 620 aaKnown RBP24.95■■□□□ 1.58
COL9A3-201ENST00000343916 KIF20BQ96Q89 1820 aa24.94■■□□□ 1.58
COL9A3-201ENST00000343916 PNPLA6Q8IY17 1366 aa24.94■■□□□ 1.58
COL9A3-201ENST00000343916 NCKAP5LQ9HCH0 1330 aa24.93■■□□□ 1.58
COL9A3-201ENST00000343916 FAM161AQ3B820 660 aa24.93■■□□□ 1.58
COL9A3-201ENST00000343916 WASLO00401 505 aaPredicted RBP24.92■■□□□ 1.58
COL9A3-201ENST00000343916 RIPK4P57078 832 aa24.92■■□□□ 1.58
COL9A3-201ENST00000343916 POLKQ9UBT6 870 aa24.92■■□□□ 1.58
COL9A3-201ENST00000343916 EXOSC9Q06265 439 aaKnown RBP24.91■■□□□ 1.58
COL9A3-201ENST00000343916 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.91■■□□□ 1.58
COL9A3-201ENST00000343916 ATP7BP35670 1465 aa24.91■■□□□ 1.58
COL9A3-201ENST00000343916 PPIP5K1Q6PFW1 1433 aa24.89■■□□□ 1.58
COL9A3-201ENST00000343916 ZRANB1Q9UGI0 708 aa24.89■■□□□ 1.57
COL9A3-201ENST00000343916 PCDHB15Q9Y5E8 787 aa24.89■■□□□ 1.57
COL9A3-201ENST00000343916 NME9Q86XW9 330 aa24.88■■□□□ 1.57
COL9A3-201ENST00000343916 DNAJC5Q9H3Z4 198 aa24.88■■□□□ 1.57
COL9A3-201ENST00000343916 EMILIN1Q9Y6C2 1016 aa24.87■■□□□ 1.57
COL9A3-201ENST00000343916 PRKAR2BP31323 418 aa24.86■■□□□ 1.57
COL9A3-201ENST00000343916 NUDT16Q96DE0 195 aaKnown RBP24.86■■□□□ 1.57
COL9A3-201ENST00000343916 TNRQ92752 1358 aa24.85■■□□□ 1.57
COL9A3-201ENST00000343916 SMC4Q9NTJ3 1288 aa24.85■■□□□ 1.57
COL9A3-201ENST00000343916 CPSF1Q10570 1443 aaKnown RBP24.85■■□□□ 1.57
COL9A3-201ENST00000343916 HMOX1P09601 288 aa24.85■■□□□ 1.57
COL9A3-201ENST00000343916 FCHSD2O94868 740 aa24.84■■□□□ 1.57
COL9A3-201ENST00000343916 ZKSCAN2Q63HK3 967 aa24.84■■□□□ 1.57
COL9A3-201ENST00000343916 LRRC7Q96NW7 1537 aa24.83■■□□□ 1.57
COL9A3-201ENST00000343916 MAP2P11137 1827 aaKnown RBP24.83■■□□□ 1.57
COL9A3-201ENST00000343916 SSH1Q8WYL5 1049 aa24.83■■□□□ 1.57
COL9A3-201ENST00000343916 RSPH6AQ9H0K4 717 aa24.83■■□□□ 1.57
COL9A3-201ENST00000343916 FTSJ3Q8IY81 847 aaKnown RBP24.83■■□□□ 1.56
COL9A3-201ENST00000343916 EDC4Q6P2E9 1401 aaKnown RBP24.82■■□□□ 1.56
COL9A3-201ENST00000343916 LAS1LQ9Y4W2 734 aaKnown RBP24.82■■□□□ 1.56
COL9A3-201ENST00000343916 MVPQ14764 893 aaKnown RBP24.81■■□□□ 1.56
COL9A3-201ENST00000343916 PNNQ9H307 717 aaKnown RBP24.81■■□□□ 1.56
COL9A3-201ENST00000343916 CT47B1P0C2W7 299 aaPredicted RBP24.81■■□□□ 1.56
COL9A3-201ENST00000343916 HDGFP51858 240 aaKnown RBP24.81■■□□□ 1.56
COL9A3-201ENST00000343916 DZIP1LQ8IYY4 767 aaKnown RBP24.81■■□□□ 1.56
COL9A3-201ENST00000343916 CCDC61Q9Y6R9 512 aa24.81■■□□□ 1.56
COL9A3-201ENST00000343916 PMFBP1Q8TBY8 1022 aa24.8■■□□□ 1.56
COL9A3-201ENST00000343916 PHACTR3Q96KR7 559 aa24.8■■□□□ 1.56
COL9A3-201ENST00000343916 TMEM2Q9UHN6 1383 aa24.8■■□□□ 1.56
COL9A3-201ENST00000343916 IL16Q14005 1332 aa24.8■■□□□ 1.56
COL9A3-201ENST00000343916 TRIM27P14373 513 aa24.79■■□□□ 1.56
COL9A3-201ENST00000343916 SLC4A3P48751 1232 aa24.78■■□□□ 1.56
COL9A3-201ENST00000343916 RRS1Q15050 365 aaKnown RBP24.78■■□□□ 1.56
COL9A3-201ENST00000343916 RTL5Q5HYW3 569 aaPredicted RBP24.78■■□□□ 1.56
COL9A3-201ENST00000343916 DDRGK1Q96HY6 314 aa24.78■■□□□ 1.56
COL9A3-201ENST00000343916 FAM135BQ49AJ0 1406 aa24.78■■□□□ 1.56
COL9A3-201ENST00000343916 PRR36Q9H6K5 1346 aa24.78■■□□□ 1.56
COL9A3-201ENST00000343916 CDC42BPGQ6DT37 1551 aa24.78■■□□□ 1.56
COL9A3-201ENST00000343916 CPS1P31327 1500 aa24.77■■□□□ 1.56
COL9A3-201ENST00000343916 AAMPQ13685 434 aa24.77■■□□□ 1.56
COL9A3-201ENST00000343916 ROBO2Q9HCK4 1378 aa24.77■■□□□ 1.56
COL9A3-201ENST00000343916 TECPR2O15040 1411 aa24.77■■□□□ 1.56
COL9A3-201ENST00000343916 CEBPAP49715 358 aaPredicted RBP24.77■■□□□ 1.56
COL9A3-201ENST00000343916 THUMPD2Q9BTF0 503 aaKnown RBP24.77■■□□□ 1.56
COL9A3-201ENST00000343916 NUTM2FA1L443 756 aa24.76■■□□□ 1.55
COL9A3-201ENST00000343916 NEFMP07197 916 aa24.76■■□□□ 1.55
COL9A3-201ENST00000343916 COG3Q96JB2 828 aa24.76■■□□□ 1.55
COL9A3-201ENST00000343916 NOB1Q9ULX3 412 aaKnown RBP24.76■■□□□ 1.55
COL9A3-201ENST00000343916 UBR1Q8IWV7 1749 aa24.75■■□□□ 1.55
COL9A3-201ENST00000343916 LTKP29376 864 aa24.75■■□□□ 1.55
COL9A3-201ENST00000343916 IL13P35225 146 aa24.75■■□□□ 1.55
COL9A3-201ENST00000343916 KNDC1Q76NI1 1749 aa24.74■■□□□ 1.55
COL9A3-201ENST00000343916 PLPPR3Q6T4P5 718 aa24.74■■□□□ 1.55
COL9A3-201ENST00000343916 ATF7IPQ6VMQ6 1270 aa24.74■■□□□ 1.55
COL9A3-201ENST00000343916 SIRT1Q96EB6 747 aa24.74■■□□□ 1.55
COL9A3-201ENST00000343916 ITPRIPQ8IWB1 547 aa24.73■■□□□ 1.55
COL9A3-201ENST00000343916 ADAMTS13Q76LX8 1427 aa24.73■■□□□ 1.55
COL9A3-201ENST00000343916 PDZRN3Q9UPQ7 1066 aa24.73■■□□□ 1.55
COL9A3-201ENST00000343916 RWDD1Q9H446 243 aaPredicted RBP24.72■■□□□ 1.55
COL9A3-201ENST00000343916 NFE2L2Q16236 605 aa24.71■■□□□ 1.55
COL9A3-201ENST00000343916 SEC24BO95487 1268 aa24.7■■□□□ 1.54
COL9A3-201ENST00000343916 SLC26A8Q96RN1 970 aa24.7■■□□□ 1.54
COL9A3-201ENST00000343916 AATKQ6ZMQ8 1374 aa24.7■■□□□ 1.54
COL9A3-201ENST00000343916 MON2Q7Z3U7 1717 aa24.7■■□□□ 1.54
COL9A3-201ENST00000343916 CDK12Q9NYV4 1490 aaPredicted RBP24.7■■□□□ 1.54
COL9A3-201ENST00000343916 TMEM57Q8N5G2 664 aa24.69■■□□□ 1.54
COL9A3-201ENST00000343916 ZNF692Q9BU19 519 aaPredicted RBP24.67■■□□□ 1.54
COL9A3-201ENST00000343916 DDX19BQ9UMR2 479 aa24.67■■□□□ 1.54
COL9A3-201ENST00000343916 C3P01024 1663 aa24.66■■□□□ 1.54
COL9A3-201ENST00000343916 VIRMAQ69YN4 1812 aaKnown RBP24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms