RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 PRG4Q92954 1404 aaPredicted RBP5.77□□□□□ -1.49
CSMD3-203ENST00000343508 CCP110O43303 1012 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 LRRFIP1Q32MZ4 808 aaKnown RBP5.76□□□□□ -1.49
CSMD3-203ENST00000343508 PBRM1Q86U86 1689 aa5.76□□□□□ -1.49
CSMD3-203ENST00000343508 PTPRKQ15262 1439 aa5.76□□□□□ -1.49
CSMD3-203ENST00000343508 TPM1P09493 284 aa5.76□□□□□ -1.49
CSMD3-203ENST00000343508 EXOSC9Q06265 439 aaKnown RBP5.76□□□□□ -1.49
CSMD3-203ENST00000343508 TSR1Q2NL82 804 aaKnown RBP5.76□□□□□ -1.49
CSMD3-203ENST00000343508 ALDH1L2Q3SY69 923 aa5.76□□□□□ -1.49
CSMD3-203ENST00000343508 CNTROBQ8N137 903 aa5.76□□□□□ -1.49
CSMD3-203ENST00000343508 XRCC6P12956 609 aaKnown RBP eCLIP5.75□□□□□ -1.49
CSMD3-203ENST00000343508 TNPO1Q92973 898 aaKnown RBP5.75□□□□□ -1.49
CSMD3-203ENST00000343508 NUP160Q12769 1436 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 TAOK2Q9UL54 1235 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 KIAA0586Q9BVV6 1533 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 KDM5CP41229 1560 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 MAGI1Q96QZ7 1491 aaPredicted RBP5.75□□□□□ -1.49
CSMD3-203ENST00000343508 AEBP1Q8IUX7 1158 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 KDM5AP29375 1690 aaKnown RBP5.75□□□□□ -1.49
CSMD3-203ENST00000343508 SCAF11Q99590 1463 aaKnown RBP5.75□□□□□ -1.49
CSMD3-203ENST00000343508 A0A0U1RQG5 324 aaPredicted RBP5.75□□□□□ -1.49
CSMD3-203ENST00000343508 TRIM5Q9C035 493 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 SRCIN1Q9C0H9 1055 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 ZMYM3Q14202 1370 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 SOX12O15370 315 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 PRIMPOLQ96LW4 560 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 ACBD3Q9H3P7 528 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 TEX14Q8IWB6 1497 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 ANKRD1Q15327 319 aa5.75□□□□□ -1.49
CSMD3-203ENST00000343508 IFT140Q96RY7 1462 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 SAMD9Q5K651 1589 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 BMP2KLQ5H9B9 411 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 VPS37CA5D8V6 355 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-203ENST00000343508 HIP1O00291 1037 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 AMPHP49418 695 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 HSP90B2PQ58FF3 399 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 SYCE3A1L190 88 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 IGHDP01880 384 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 SNX21Q969T3 373 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 ARHGEF11O15085 1522 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 CHMP3Q9Y3E7 222 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 GNAI3P08754 354 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 TWISTNBQ3B726 338 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-203ENST00000343508 ABCC11Q96J66 1382 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 UHRF1BP1Q6BDS2 1440 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 RPAP2Q8IXW5 612 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-203ENST00000343508 MNS1Q8NEH6 495 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 LRRCC1Q9C099 1032 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 MRC2Q9UBG0 1479 aa5.74□□□□□ -1.49
CSMD3-203ENST00000343508 HDAC1Q13547 482 aaPredicted RBP5.73□□□□□ -1.49
CSMD3-203ENST00000343508 TSPYL1Q9H0U9 437 aa5.73□□□□□ -1.49
CSMD3-203ENST00000343508 FKBP5Q13451 457 aaPredicted RBP5.73□□□□□ -1.49
CSMD3-203ENST00000343508 NSD3Q9BZ95 1437 aa5.73□□□□□ -1.49
CSMD3-203ENST00000343508 IFIT2P09913 472 aaKnown RBP5.73□□□□□ -1.49
CSMD3-203ENST00000343508 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.73□□□□□ -1.49
CSMD3-203ENST00000343508 GNAI2P04899 355 aa5.73□□□□□ -1.49
CSMD3-203ENST00000343508 SPC24Q8NBT2 197 aa5.73□□□□□ -1.49
CSMD3-203ENST00000343508 NSD2O96028 1365 aa5.73□□□□□ -1.49
CSMD3-203ENST00000343508 CCDC112Q8NEF3 446 aa5.73□□□□□ -1.49
CSMD3-203ENST00000343508 C9orf78Q9NZ63 289 aaPredicted RBP5.73□□□□□ -1.49
CSMD3-203ENST00000343508 CCDC73Q6ZRK6 1079 aa5.73□□□□□ -1.49
CSMD3-203ENST00000343508 WDR62O43379 1518 aa5.73□□□□□ -1.49
CSMD3-203ENST00000343508 BLMP54132 1417 aaPredicted RBP5.73□□□□□ -1.49
CSMD3-203ENST00000343508 GORABQ5T7V8 394 aa5.73□□□□□ -1.49
CSMD3-203ENST00000343508 LEKR1Q6ZMV7 388 aa5.73□□□□□ -1.49
CSMD3-203ENST00000343508 DISP3Q9P2K9 1392 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 DUOX2Q9NRD8 1548 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 LRSAM1Q6UWE0 723 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 PRAG1Q86YV5 1406 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 CPLX2Q6PUV4 134 aaKnown RBP5.72□□□□□ -1.49
CSMD3-203ENST00000343508 TMEM57Q8N5G2 664 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 PIK3C2GO75747 1445 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 CCT4P50991 539 aaKnown RBP5.72□□□□□ -1.49
CSMD3-203ENST00000343508 KRT85P78386 507 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 CCDC30Q5VVM6 783 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 NOC3LQ8WTT2 800 aaKnown RBP5.72□□□□□ -1.49
CSMD3-203ENST00000343508 ERCC4Q92889 916 aaPredicted RBP5.72□□□□□ -1.49
CSMD3-203ENST00000343508 CGNQ9P2M7 1197 aaKnown RBP5.72□□□□□ -1.49
CSMD3-203ENST00000343508 KDM2BQ8NHM5 1336 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 CCDC183Q5T5S1 534 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 AK7Q96M32 723 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 KINO60870 393 aaKnown RBP5.72□□□□□ -1.49
CSMD3-203ENST00000343508 CCAR2Q8N163 923 aaKnown RBP5.72□□□□□ -1.49
CSMD3-203ENST00000343508 CFAP45Q9UL16 551 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 SKAP1Q86WV1 359 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 FCHSD2O94868 740 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 NEXNQ0ZGT2 675 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 TRIM29Q14134 588 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 CFAP70Q5T0N1 1121 aa5.72□□□□□ -1.49
CSMD3-203ENST00000343508 TSR2Q969E8 191 aaKnown RBP5.72□□□□□ -1.49
CSMD3-203ENST00000343508 ZSCAN23Q3MJ62 389 aa5.71□□□□□ -1.49
CSMD3-203ENST00000343508 ANKRD20A12PQ8NF67 263 aa5.71□□□□□ -1.49
CSMD3-203ENST00000343508 HMOX1P09601 288 aa5.71□□□□□ -1.49
CSMD3-203ENST00000343508 CBX1P83916 185 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 CCDC27Q2M243 656 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 PLPPR3Q6T4P5 718 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 IPO7O95373 1038 aaKnown RBP5.71□□□□□ -1.5
CSMD3-203ENST00000343508 UVSSAQ2YD98 709 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 TNMDQ9H2S6 317 aa5.71□□□□□ -1.5
CSMD3-203ENST00000343508 C1orf115Q9H7X2 142 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms