RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 EP400NLQ6ZTU2 488 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 E9PCH4 1651 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 DHX57Q6P158 1386 aaKnown RBP4.32□□□□□ -1.72
SYNE1-201ENST00000341594 CALD1Q05682 793 aaKnown RBP4.32□□□□□ -1.72
SYNE1-201ENST00000341594 A6NNZ2 444 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 TUBB8Q3ZCM7 444 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 CGNQ9P2M7 1197 aaKnown RBP4.32□□□□□ -1.72
SYNE1-201ENST00000341594 HFM1A2PYH4 1435 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 AKAP12Q02952 1782 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 SSR1P43307 286 aaKnown RBP4.31□□□□□ -1.72
SYNE1-201ENST00000341594 RCAN3Q9UKA8 241 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 POLD1P28340 1107 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 GBP4Q96PP9 640 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 TMX4Q9H1E5 349 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-201ENST00000341594 PRXQ9BXM0 1461 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 CLCN1P35523 988 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 WDR81Q562E7 1941 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 IGHDP01880 384 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 CENPQQ7L2Z9 268 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-201ENST00000341594 ARHGAP35Q9NRY4 1499 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 SLC20A2Q08357 652 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 A0A087WWV3 80 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 CCDC97Q96F63 343 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-201ENST00000341594 KIF2AO00139 706 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-201ENST00000341594 NEURL4Q96JN8 1562 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 FAM160A1Q05DH4 1040 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 DLG5Q8TDM6 1919 aa4.31□□□□□ -1.72
SYNE1-201ENST00000341594 PROCA1Q8NCQ7 364 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-201ENST00000341594 TTC3P53804 2025 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 TRAK2O60296 914 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 PDE3AQ14432 1141 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 ZRSR1Q15695 479 aaKnown RBP4.3□□□□□ -1.72
SYNE1-201ENST00000341594 HSP90AB3PQ58FF7 597 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 RILPL2Q969X0 211 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 YY1P25490 414 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 FAM212AQ96EL1 285 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 MRPS25P82663 173 aaKnown RBP4.3□□□□□ -1.72
SYNE1-201ENST00000341594 ZSWIM4Q9H7M6 989 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 SYAP1Q96A49 352 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-201ENST00000341594 VASPP50552 380 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-201ENST00000341594 CENPHQ9H3R5 247 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 LETM1O95202 739 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-201ENST00000341594 PPM1EQ8WY54 764 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 GNL2Q13823 731 aaKnown RBP4.3□□□□□ -1.72
SYNE1-201ENST00000341594 SCHIP1Q9P0W5 487 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-201ENST00000341594 ANKRD13AQ8IZ07 590 aa4.3□□□□□ -1.72
SYNE1-201ENST00000341594 SF3B2Q13435 895 aaKnown RBP4.29□□□□□ -1.72
SYNE1-201ENST00000341594 UTP14CQ5TAP6 766 aaKnown RBP4.29□□□□□ -1.72
SYNE1-201ENST00000341594 FEZ1Q99689 392 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 BAZ2BQ9UIF8 2168 aaKnown RBP4.29□□□□□ -1.72
SYNE1-201ENST00000341594 NCAPD3P42695 1498 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 PPP4R3CPQ6ZMV5 832 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 IRX3P78415 501 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-201ENST00000341594 FHOD3Q2V2M9 1422 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 CCDC66A2RUB6 948 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 CEP120Q8N960 986 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 NPC1L1Q9UHC9 1359 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 UTP14AQ9BVJ6 771 aaKnown RBP4.29□□□□□ -1.72
SYNE1-201ENST00000341594 APAF1O14727 1248 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 BRPF1P55201 1214 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-201ENST00000341594 BACH2Q9BYV9 841 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 CCDC141Q6ZP82 1450 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 PRIMPOLQ96LW4 560 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 CASKIN1Q8WXD9 1431 aa4.29□□□□□ -1.72
SYNE1-201ENST00000341594 RBM33Q96EV2 1170 aaKnown RBP4.28□□□□□ -1.72
SYNE1-201ENST00000341594 CDC42BPBQ9Y5S2 1711 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 NUTM1Q86Y26 1132 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 ANKRD26Q9UPS8 1709 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 NOC3LQ8WTT2 800 aaKnown RBP4.28□□□□□ -1.72
SYNE1-201ENST00000341594 EPB41L2O43491 1005 aaKnown RBP4.28□□□□□ -1.72
SYNE1-201ENST00000341594 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.28□□□□□ -1.72
SYNE1-201ENST00000341594 ERCC6Q03468 1493 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 CDC42BPAQ5VT25 1732 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 MCM2P49736 904 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 ATAD5Q96QE3 1844 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 NAA30Q147X3 362 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-201ENST00000341594 FLIIQ13045 1269 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 N4BP2Q86UW6 1770 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-201ENST00000341594 PPP4R3BQ5MIZ7 849 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 LRRC9Q6ZRR7 1453 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 TSHZ3Q63HK5 1081 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 LOC102724159A0A0B4J2E5 919 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 PWP2Q15269 919 aaKnown RBP4.28□□□□□ -1.72
SYNE1-201ENST00000341594 PLXNC1O60486 1568 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 FGD5Q6ZNL6 1462 aa4.28□□□□□ -1.72
SYNE1-201ENST00000341594 STK3Q13188 491 aa4.28□□□□□ -1.73
SYNE1-201ENST00000341594 DIAPH3Q9NSV4 1193 aa4.28□□□□□ -1.73
SYNE1-201ENST00000341594 KIF14Q15058 1648 aa4.28□□□□□ -1.73
SYNE1-201ENST00000341594 TRIP11Q15643 1979 aa4.28□□□□□ -1.73
SYNE1-201ENST00000341594 GAPVD1Q14C86 1478 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 DNA2P51530 1060 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 MYO16Q9Y6X6 1858 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 NRDCO43847 1150 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 KIF15Q9NS87 1388 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 DISP3Q9P2K9 1392 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 ENOX2Q16206 610 aaKnown RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 PCM1Q15154 2024 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 PES1O00541 588 aaKnown RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 HSP90AA4PQ58FG1 418 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 KIAA1211Q6ZU35 1233 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms