RNA–Protein interactions for RNA: ENST00000334859.8

LRCH3-201, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LRCH3, Length 2,258 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-201ENST00000334859 RIMS2Q9UQ26 1411 aa22.79■■□□□ 1.24
LRCH3-201ENST00000334859 KIF20BQ96Q89 1820 aa22.78■■□□□ 1.24
LRCH3-201ENST00000334859 RLBP1P12271 317 aa22.78■■□□□ 1.24
LRCH3-201ENST00000334859 DEKP35659 375 aaKnown RBP22.78■■□□□ 1.24
LRCH3-201ENST00000334859 TSR2Q969E8 191 aaKnown RBP22.78■■□□□ 1.24
LRCH3-201ENST00000334859 SPATA31D1Q6ZQQ2 1576 aa22.78■■□□□ 1.24
LRCH3-201ENST00000334859 PLEKHF1Q96S99 279 aa22.77■■□□□ 1.24
LRCH3-201ENST00000334859 WAPLQ7Z5K2 1190 aa22.77■■□□□ 1.23
LRCH3-201ENST00000334859 TMPOP42166 694 aaKnown RBP22.76■■□□□ 1.23
LRCH3-201ENST00000334859 DIAPH1O60610 1272 aaKnown RBP22.75■■□□□ 1.23
LRCH3-201ENST00000334859 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.75■■□□□ 1.23
LRCH3-201ENST00000334859 DLC1Q96QB1 1528 aa22.74■■□□□ 1.23
LRCH3-201ENST00000334859 AAMPQ13685 434 aa22.73■■□□□ 1.23
LRCH3-201ENST00000334859 SETD1AO15047 1707 aaKnown RBP22.73■■□□□ 1.23
LRCH3-201ENST00000334859 PMFBP1Q8TBY8 1022 aa22.72■■□□□ 1.23
LRCH3-201ENST00000334859 TRIM35Q9UPQ4 493 aa22.72■■□□□ 1.23
LRCH3-201ENST00000334859 DAXXQ9UER7 740 aaPredicted RBP22.71■■□□□ 1.23
LRCH3-201ENST00000334859 ATP7BP35670 1465 aa22.71■■□□□ 1.23
LRCH3-201ENST00000334859 PPM1GO15355 546 aaPredicted RBP22.71■■□□□ 1.23
LRCH3-201ENST00000334859 FTSJ3Q8IY81 847 aaKnown RBP22.71■■□□□ 1.23
LRCH3-201ENST00000334859 EXOSC9Q06265 439 aaKnown RBP22.7■■□□□ 1.22
LRCH3-201ENST00000334859 SMC4Q9NTJ3 1288 aa22.7■■□□□ 1.22
LRCH3-201ENST00000334859 ZKSCAN2Q63HK3 967 aa22.7■■□□□ 1.22
LRCH3-201ENST00000334859 PCDHB15Q9Y5E8 787 aa22.7■■□□□ 1.22
LRCH3-201ENST00000334859 PNPLA6Q8IY17 1366 aa22.69■■□□□ 1.22
LRCH3-201ENST00000334859 VIRMAQ69YN4 1812 aaKnown RBP22.69■■□□□ 1.22
LRCH3-201ENST00000334859 CT47B1P0C2W7 299 aaPredicted RBP22.69■■□□□ 1.22
LRCH3-201ENST00000334859 RIPK4P57078 832 aa22.69■■□□□ 1.22
LRCH3-201ENST00000334859 ESF1Q9H501 851 aaKnown RBP22.68■■□□□ 1.22
LRCH3-201ENST00000334859 NEFMP07197 916 aa22.68■■□□□ 1.22
LRCH3-201ENST00000334859 SLC4A3P48751 1232 aa22.68■■□□□ 1.22
LRCH3-201ENST00000334859 PNNQ9H307 717 aaKnown RBP22.68■■□□□ 1.22
LRCH3-201ENST00000334859 MVPQ14764 893 aaKnown RBP22.67■■□□□ 1.22
LRCH3-201ENST00000334859 LRRC7Q96NW7 1537 aa22.67■■□□□ 1.22
LRCH3-201ENST00000334859 DZIP1LQ8IYY4 767 aaKnown RBP22.66■■□□□ 1.22
LRCH3-201ENST00000334859 FBLN1P23142 703 aa22.66■■□□□ 1.22
LRCH3-201ENST00000334859 IL16Q14005 1332 aa22.66■■□□□ 1.22
LRCH3-201ENST00000334859 NRXN3Q9Y4C0 1643 aa22.65■■□□□ 1.22
LRCH3-201ENST00000334859 PPIP5K1Q6PFW1 1433 aa22.64■■□□□ 1.21
LRCH3-201ENST00000334859 CDC42BPGQ6DT37 1551 aa22.64■■□□□ 1.21
LRCH3-201ENST00000334859 METP08581 1390 aa22.64■■□□□ 1.21
LRCH3-201ENST00000334859 SSH1Q8WYL5 1049 aa22.64■■□□□ 1.21
LRCH3-201ENST00000334859 BCL11AQ9H165 835 aa22.64■■□□□ 1.21
LRCH3-201ENST00000334859 RWDD1Q9H446 243 aaPredicted RBP22.64■■□□□ 1.21
LRCH3-201ENST00000334859 POLKQ9UBT6 870 aa22.64■■□□□ 1.21
LRCH3-201ENST00000334859 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.63■■□□□ 1.21
LRCH3-201ENST00000334859 FCHSD2O94868 740 aa22.62■■□□□ 1.21
LRCH3-201ENST00000334859 PRKAR2BP31323 418 aa22.62■■□□□ 1.21
LRCH3-201ENST00000334859 WASLO00401 505 aaPredicted RBP22.62■■□□□ 1.21
LRCH3-201ENST00000334859 TXNDC2Q86VQ3 553 aa22.62■■□□□ 1.21
LRCH3-201ENST00000334859 TRIM27P14373 513 aa22.61■■□□□ 1.21
LRCH3-201ENST00000334859 EDC4Q6P2E9 1401 aaKnown RBP22.61■■□□□ 1.21
LRCH3-201ENST00000334859 ZMYM3Q14202 1370 aa22.61■■□□□ 1.21
LRCH3-201ENST00000334859 MAP2P11137 1827 aaKnown RBP22.6■■□□□ 1.21
LRCH3-201ENST00000334859 ITPRIPQ8IWB1 547 aa22.6■■□□□ 1.21
LRCH3-201ENST00000334859 RSPH6AQ9H0K4 717 aa22.6■■□□□ 1.21
LRCH3-201ENST00000334859 PDZRN3Q9UPQ7 1066 aa22.6■■□□□ 1.21
LRCH3-201ENST00000334859 FAM135BQ49AJ0 1406 aa22.6■■□□□ 1.21
LRCH3-201ENST00000334859 NME9Q86XW9 330 aa22.59■■□□□ 1.21
LRCH3-201ENST00000334859 USP35Q9P2H5 1018 aa22.59■■□□□ 1.21
LRCH3-201ENST00000334859 ATF7IPQ6VMQ6 1270 aa22.59■■□□□ 1.21
LRCH3-201ENST00000334859 EMILIN1Q9Y6C2 1016 aa22.59■■□□□ 1.21
LRCH3-201ENST00000334859 CPSF1Q10570 1443 aaKnown RBP22.59■■□□□ 1.21
LRCH3-201ENST00000334859 HMOX1P09601 288 aa22.58■■□□□ 1.21
LRCH3-201ENST00000334859 NOB1Q9ULX3 412 aaKnown RBP22.57■■□□□ 1.2
LRCH3-201ENST00000334859 NUDT16Q96DE0 195 aaKnown RBP22.56■■□□□ 1.2
LRCH3-201ENST00000334859 KIF13AQ9H1H9 1805 aa22.56■■□□□ 1.2
LRCH3-201ENST00000334859 DDX19BQ9UMR2 479 aa22.56■■□□□ 1.2
LRCH3-201ENST00000334859 KIF16BQ96L93 1317 aa22.55■■□□□ 1.2
LRCH3-201ENST00000334859 NCKAP5LQ9HCH0 1330 aa22.55■■□□□ 1.2
LRCH3-201ENST00000334859 SEC24BO95487 1268 aa22.55■■□□□ 1.2
LRCH3-201ENST00000334859 ZRANB1Q9UGI0 708 aa22.55■■□□□ 1.2
LRCH3-201ENST00000334859 KNDC1Q76NI1 1749 aa22.55■■□□□ 1.2
LRCH3-201ENST00000334859 TNRQ92752 1358 aa22.54■■□□□ 1.2
LRCH3-201ENST00000334859 HDGFP51858 240 aaKnown RBP22.54■■□□□ 1.2
LRCH3-201ENST00000334859 USP19O94966 1318 aa22.54■■□□□ 1.2
LRCH3-201ENST00000334859 CDK12Q9NYV4 1490 aaPredicted RBP22.54■■□□□ 1.2
LRCH3-201ENST00000334859 NFE2L2Q16236 605 aa22.53■■□□□ 1.2
LRCH3-201ENST00000334859 PHACTR3Q96KR7 559 aa22.53■■□□□ 1.2
LRCH3-201ENST00000334859 COG3Q96JB2 828 aa22.52■■□□□ 1.2
LRCH3-201ENST00000334859 TECPR2O15040 1411 aa22.52■■□□□ 1.2
LRCH3-201ENST00000334859 IPO8O15397 1037 aaKnown RBP22.52■■□□□ 1.2
LRCH3-201ENST00000334859 CCDC61Q9Y6R9 512 aa22.52■■□□□ 1.2
LRCH3-201ENST00000334859 MON2Q7Z3U7 1717 aa22.52■■□□□ 1.2
LRCH3-201ENST00000334859 CPS1P31327 1500 aa22.51■■□□□ 1.19
LRCH3-201ENST00000334859 TMEM57Q8N5G2 664 aa22.51■■□□□ 1.19
LRCH3-201ENST00000334859 THUMPD2Q9BTF0 503 aaKnown RBP22.51■■□□□ 1.19
LRCH3-201ENST00000334859 ITSN1Q15811 1721 aa22.5■■□□□ 1.19
LRCH3-201ENST00000334859 IL13P35225 146 aa22.5■■□□□ 1.19
LRCH3-201ENST00000334859 RRS1Q15050 365 aaKnown RBP22.5■■□□□ 1.19
LRCH3-201ENST00000334859 ALDH1L2Q3SY69 923 aa22.49■■□□□ 1.19
LRCH3-201ENST00000334859 UPF2Q9HAU5 1272 aaKnown RBP22.49■■□□□ 1.19
LRCH3-201ENST00000334859 AATKQ6ZMQ8 1374 aa22.49■■□□□ 1.19
LRCH3-201ENST00000334859 TMEM2Q9UHN6 1383 aa22.49■■□□□ 1.19
LRCH3-201ENST00000334859 CALD1Q05682 793 aaKnown RBP22.48■■□□□ 1.19
LRCH3-201ENST00000334859 HDAC1Q13547 482 aaPredicted RBP22.48■■□□□ 1.19
LRCH3-201ENST00000334859 UBR1Q8IWV7 1749 aa22.48■■□□□ 1.19
LRCH3-201ENST00000334859 NFKBIBQ15653 356 aa22.47■■□□□ 1.19
LRCH3-201ENST00000334859 AKAP12Q02952 1782 aa22.47■■□□□ 1.19
LRCH3-201ENST00000334859 SIRT1Q96EB6 747 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms