RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 FYB1O15117 783 aa17.23■□□□□ 0.35
CPNE1-201ENST00000317677 CPSF1Q10570 1443 aaKnown RBP17.23■□□□□ 0.35
CPNE1-201ENST00000317677 CDC42BPGQ6DT37 1551 aa17.23■□□□□ 0.35
CPNE1-201ENST00000317677 PPIP5K1Q6PFW1 1433 aa17.23■□□□□ 0.35
CPNE1-201ENST00000317677 GGNBP2Q9H3C7 697 aa17.22■□□□□ 0.35
CPNE1-201ENST00000317677 IRX6P78412 446 aaPredicted RBP17.22■□□□□ 0.35
CPNE1-201ENST00000317677 NUDT16Q96DE0 195 aaKnown RBP17.21■□□□□ 0.35
CPNE1-201ENST00000317677 CCDC136Q96JN2 1154 aa17.21■□□□□ 0.35
CPNE1-201ENST00000317677 PTCH1Q13635 1447 aa17.21■□□□□ 0.35
CPNE1-201ENST00000317677 LRRC7Q96NW7 1537 aa17.21■□□□□ 0.35
CPNE1-201ENST00000317677 ITSN1Q15811 1721 aa17.21■□□□□ 0.35
CPNE1-201ENST00000317677 RTL5Q5HYW3 569 aaPredicted RBP17.2■□□□□ 0.34
CPNE1-201ENST00000317677 HDGFL2Q7Z4V5 671 aaPredicted RBP17.2■□□□□ 0.34
CPNE1-201ENST00000317677 AMOTL2Q9Y2J4 779 aa17.2■□□□□ 0.34
CPNE1-201ENST00000317677 MTHFSP49914 203 aa17.2■□□□□ 0.34
CPNE1-201ENST00000317677 CDCA7LQ96GN5 454 aa17.2■□□□□ 0.34
CPNE1-201ENST00000317677 NBR1Q14596 966 aa17.19■□□□□ 0.34
CPNE1-201ENST00000317677 CCDC146Q8IYE0 955 aa17.19■□□□□ 0.34
CPNE1-201ENST00000317677 IL27Q8NEV9 243 aa17.19■□□□□ 0.34
CPNE1-201ENST00000317677 COL3A1P02461 1466 aaPredicted RBP17.19■□□□□ 0.34
CPNE1-201ENST00000317677 PAK3O75914 559 aaPredicted RBP17.18■□□□□ 0.34
CPNE1-201ENST00000317677 RNF123Q5XPI4 1314 aa17.18■□□□□ 0.34
CPNE1-201ENST00000317677 ZNF521Q96K83 1311 aa17.18■□□□□ 0.34
CPNE1-201ENST00000317677 KCNA6P17658 529 aa17.17■□□□□ 0.34
CPNE1-201ENST00000317677 NKTRP30414 1462 aaKnown RBP17.17■□□□□ 0.34
CPNE1-201ENST00000317677 NRKQ7Z2Y5 1582 aa17.17■□□□□ 0.34
CPNE1-201ENST00000317677 PDE3BQ13370 1112 aa17.17■□□□□ 0.34
CPNE1-201ENST00000317677 CHD2O14647 1828 aaKnown RBP17.17■□□□□ 0.34
CPNE1-201ENST00000317677 EDC4Q6P2E9 1401 aaKnown RBP17.16■□□□□ 0.34
CPNE1-201ENST00000317677 PIP4K2BP78356 416 aa17.16■□□□□ 0.34
CPNE1-201ENST00000317677 CCDC61Q9Y6R9 512 aa17.16■□□□□ 0.34
CPNE1-201ENST00000317677 RGPD8O14715 1765 aaPredicted RBP17.16■□□□□ 0.34
CPNE1-201ENST00000317677 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.15■□□□□ 0.34
CPNE1-201ENST00000317677 IPO9Q96P70 1041 aaKnown RBP17.14■□□□□ 0.33
CPNE1-201ENST00000317677 USP35Q9P2H5 1018 aa17.13■□□□□ 0.33
CPNE1-201ENST00000317677 PIK3R4Q99570 1358 aa17.13■□□□□ 0.33
CPNE1-201ENST00000317677 APAF1O14727 1248 aa17.13■□□□□ 0.33
CPNE1-201ENST00000317677 XIRP1Q702N8 1843 aaKnown RBP17.13■□□□□ 0.33
CPNE1-201ENST00000317677 NWD1Q149M9 1564 aa17.12■□□□□ 0.33
CPNE1-201ENST00000317677 ZRANB1Q9UGI0 708 aa17.12■□□□□ 0.33
CPNE1-201ENST00000317677 MAP2P11137 1827 aaKnown RBP17.12■□□□□ 0.33
CPNE1-201ENST00000317677 PROSER2Q86WR7 435 aaPredicted RBP17.11■□□□□ 0.33
CPNE1-201ENST00000317677 NME9Q86XW9 330 aa17.11■□□□□ 0.33
CPNE1-201ENST00000317677 NUTM2FA1L443 756 aa17.11■□□□□ 0.33
CPNE1-201ENST00000317677 FBLN1P23142 703 aa17.11■□□□□ 0.33
CPNE1-201ENST00000317677 NALCNQ8IZF0 1738 aa17.11■□□□□ 0.33
CPNE1-201ENST00000317677 FMN2Q9NZ56 1722 aa17.1■□□□□ 0.33
CPNE1-201ENST00000317677 TMEM94Q12767 1356 aa17.09■□□□□ 0.33
CPNE1-201ENST00000317677 PNPLA6Q8IY17 1366 aa17.09■□□□□ 0.33
CPNE1-201ENST00000317677 PLEKHG3A1L390 1219 aa17.09■□□□□ 0.33
CPNE1-201ENST00000317677 CFAP53Q96M91 514 aa17.09■□□□□ 0.33
CPNE1-201ENST00000317677 ACEP12821 1306 aa17.08■□□□□ 0.32
CPNE1-201ENST00000317677 SPINK5Q9NQ38 1064 aaPredicted RBP17.07■□□□□ 0.32
CPNE1-201ENST00000317677 USP6P35125 1406 aa17.06■□□□□ 0.32
CPNE1-201ENST00000317677 SSH2Q76I76 1423 aa17.06■□□□□ 0.32
CPNE1-201ENST00000317677 DUSP27Q5VZP5 1158 aa17.06■□□□□ 0.32
CPNE1-201ENST00000317677 POLKQ9UBT6 870 aa17.06■□□□□ 0.32
CPNE1-201ENST00000317677 ZBTB47Q9UFB7 747 aaPredicted RBP17.06■□□□□ 0.32
CPNE1-201ENST00000317677 HSPA1LP34931 641 aa17.06■□□□□ 0.32
CPNE1-201ENST00000317677 ANP32AP39687 249 aaKnown RBP17.06■□□□□ 0.32
CPNE1-201ENST00000317677 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.06■□□□□ 0.32
CPNE1-201ENST00000317677 RCAN3Q9UKA8 241 aa17.06■□□□□ 0.32
CPNE1-201ENST00000317677 TRMT2AQ8IZ69 625 aaKnown RBP17.05■□□□□ 0.32
CPNE1-201ENST00000317677 RUNDC1Q96C34 613 aa17.05■□□□□ 0.32
CPNE1-201ENST00000317677 ZNF692Q9BU19 519 aaPredicted RBP17.05■□□□□ 0.32
CPNE1-201ENST00000317677 SLFN5Q08AF3 891 aa17.04■□□□□ 0.32
CPNE1-201ENST00000317677 TTC21BQ7Z4L5 1316 aa17.04■□□□□ 0.32
CPNE1-201ENST00000317677 MSH6P52701 1360 aa17.04■□□□□ 0.32
CPNE1-201ENST00000317677 GOLGA2Q08379 1002 aa17.04■□□□□ 0.32
CPNE1-201ENST00000317677 OVOS2A0A0J9YW53 1432 aa17.03■□□□□ 0.32
CPNE1-201ENST00000317677 OVOS2Q6IE36 1432 aa17.03■□□□□ 0.32
CPNE1-201ENST00000317677 U2AF1L5P0DN76 240 aaPredicted RBP17.02■□□□□ 0.32
CPNE1-201ENST00000317677 U2AF1Q01081 240 aaKnown RBP eCLIP17.02■□□□□ 0.324e-24■■□□□ 12.7
CPNE1-201ENST00000317677 TCP11L2Q8N4U5 519 aa17.02■□□□□ 0.32
CPNE1-201ENST00000317677 PHF23Q9BUL5 403 aaPredicted RBP17.02■□□□□ 0.32
CPNE1-201ENST00000317677 AATKQ6ZMQ8 1374 aa17.02■□□□□ 0.31
CPNE1-201ENST00000317677 RRP1P56182 461 aaKnown RBP17.02■□□□□ 0.31
CPNE1-201ENST00000317677 RRP7AQ9Y3A4 280 aaKnown RBP17.02■□□□□ 0.31
CPNE1-201ENST00000317677 EMILIN1Q9Y6C2 1016 aa17.02■□□□□ 0.31
CPNE1-201ENST00000317677 ANKARQ7Z5J8 1434 aa17.02■□□□□ 0.31
CPNE1-201ENST00000317677 NCOA3Q9Y6Q9 1424 aa17.02■□□□□ 0.31
CPNE1-201ENST00000317677 PMFBP1Q8TBY8 1022 aa17.01■□□□□ 0.31
CPNE1-201ENST00000317677 RBM33Q96EV2 1170 aaKnown RBP17.01■□□□□ 0.31
CPNE1-201ENST00000317677 PLEKHF1Q96S99 279 aa17.01■□□□□ 0.31
CPNE1-201ENST00000317677 CDK12Q9NYV4 1490 aaPredicted RBP17.01■□□□□ 0.31
CPNE1-201ENST00000317677 C14orf37Q86TY3 774 aa17■□□□□ 0.31
CPNE1-201ENST00000317677 WWC1Q8IX03 1113 aa17■□□□□ 0.31
CPNE1-201ENST00000317677 RTN4Q9NQC3 1192 aaKnown RBP17■□□□□ 0.31
CPNE1-201ENST00000317677 PIK3C2AO00443 1686 aa17■□□□□ 0.31
CPNE1-201ENST00000317677 MARF1Q9Y4F3 1742 aaKnown RBP17■□□□□ 0.31
CPNE1-201ENST00000317677 PEAK1Q9H792 1746 aa16.99■□□□□ 0.31
CPNE1-201ENST00000317677 U2SURPO15042 1029 aaKnown RBP16.99■□□□□ 0.31
CPNE1-201ENST00000317677 DIAPH1O60610 1272 aaKnown RBP16.99■□□□□ 0.31
CPNE1-201ENST00000317677 NGEFQ8N5V2 710 aa16.99■□□□□ 0.31
CPNE1-201ENST00000317677 COG3Q96JB2 828 aa16.99■□□□□ 0.31
CPNE1-201ENST00000317677 PKNOX2Q96KN3 472 aa16.99■□□□□ 0.31
CPNE1-201ENST00000317677 EIF5BO60841 1220 aaKnown RBP16.98■□□□□ 0.31
CPNE1-201ENST00000317677 RRS1Q15050 365 aaKnown RBP16.97■□□□□ 0.31
CPNE1-201ENST00000317677 NEUROD2Q15784 382 aa16.97■□□□□ 0.31
CPNE1-201ENST00000317677 ADGRL3Q9HAR2 1447 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms