RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 PRR36Q9H6K5 1346 aa18.78■□□□□ 0.6
VRK3-201ENST00000316763 CPSF1Q10570 1443 aaKnown RBP18.76■□□□□ 0.59
VRK3-201ENST00000316763 PPIP5K1Q6PFW1 1433 aa18.76■□□□□ 0.59
VRK3-201ENST00000316763 HDGFL2Q7Z4V5 671 aaPredicted RBP18.76■□□□□ 0.59
VRK3-201ENST00000316763 CERKQ8TCT0 537 aa18.76■□□□□ 0.59
VRK3-201ENST00000316763 CCDC136Q96JN2 1154 aa18.76■□□□□ 0.59
VRK3-201ENST00000316763 NSD2O96028 1365 aa18.76■□□□□ 0.59
VRK3-201ENST00000316763 PPP2R1AP30153 589 aa18.74■□□□□ 0.59
VRK3-201ENST00000316763 RCAN3Q9UKA8 241 aa18.74■□□□□ 0.59
VRK3-201ENST00000316763 MST1RQ04912 1400 aa18.74■□□□□ 0.59
VRK3-201ENST00000316763 ANKARQ7Z5J8 1434 aa18.73■□□□□ 0.59
VRK3-201ENST00000316763 FANCIQ9NVI1 1328 aa18.73■□□□□ 0.59
VRK3-201ENST00000316763 SALL2Q9Y467 1007 aaPredicted RBP18.73■□□□□ 0.59
VRK3-201ENST00000316763 RRP1P56182 461 aaKnown RBP18.72■□□□□ 0.59
VRK3-201ENST00000316763 ANP32EQ9BTT0 268 aa18.72■□□□□ 0.59
VRK3-201ENST00000316763 SLAIN2Q9P270 581 aa18.72■□□□□ 0.59
VRK3-201ENST00000316763 C1orf167Q5SNV9 1468 aa18.72■□□□□ 0.59
VRK3-201ENST00000316763 TOPAZ1Q8N9V7 1692 aa18.71■□□□□ 0.59
VRK3-201ENST00000316763 PLEKHG3A1L390 1219 aa18.71■□□□□ 0.59
VRK3-201ENST00000316763 WDR43Q15061 677 aaKnown RBP eCLIP18.71■□□□□ 0.59
VRK3-201ENST00000316763 ITSN1Q15811 1721 aa18.71■□□□□ 0.59
VRK3-201ENST00000316763 IQSEC2Q5JU85 1478 aa18.71■□□□□ 0.59
VRK3-201ENST00000316763 ESCO1Q5FWF5 840 aa18.7■□□□□ 0.58
VRK3-201ENST00000316763 ORAI2Q96SN7 254 aa18.7■□□□□ 0.58
VRK3-201ENST00000316763 EDC4Q6P2E9 1401 aaKnown RBP18.69■□□□□ 0.58
VRK3-201ENST00000316763 FYB1O15117 783 aa18.68■□□□□ 0.58
VRK3-201ENST00000316763 MORC1Q86VD1 984 aa18.68■□□□□ 0.58
VRK3-201ENST00000316763 PMFBP1Q8TBY8 1022 aa18.68■□□□□ 0.58
VRK3-201ENST00000316763 ZNF692Q9BU19 519 aaPredicted RBP18.68■□□□□ 0.58
VRK3-201ENST00000316763 ADAMTS8Q9UP79 889 aa18.67■□□□□ 0.58
VRK3-201ENST00000316763 PHF8Q9UPP1 1060 aa18.67■□□□□ 0.58
VRK3-201ENST00000316763 TOM1O60784 492 aa18.66■□□□□ 0.58
VRK3-201ENST00000316763 UBAP1LF5GYI3 381 aa18.65■□□□□ 0.58
VRK3-201ENST00000316763 ACEP12821 1306 aa18.65■□□□□ 0.58
VRK3-201ENST00000316763 AKAP12Q02952 1782 aa18.65■□□□□ 0.58
VRK3-201ENST00000316763 BRINP3Q76B58 766 aa18.64■□□□□ 0.58
VRK3-201ENST00000316763 MON2Q7Z3U7 1717 aa18.64■□□□□ 0.57
VRK3-201ENST00000316763 POLR3AO14802 1390 aaPredicted RBP18.64■□□□□ 0.57
VRK3-201ENST00000316763 CDCA7LQ96GN5 454 aa18.64■□□□□ 0.57
VRK3-201ENST00000316763 GGNBP2Q9H3C7 697 aa18.64■□□□□ 0.57
VRK3-201ENST00000316763 NGDNQ8NEJ9 315 aaKnown RBP18.63■□□□□ 0.57
VRK3-201ENST00000316763 FOXO3O43524 673 aa18.62■□□□□ 0.57
VRK3-201ENST00000316763 KIF1AQ12756 1690 aa18.62■□□□□ 0.57
VRK3-201ENST00000316763 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.62■□□□□ 0.57
VRK3-201ENST00000316763 USP6P35125 1406 aa18.61■□□□□ 0.57
VRK3-201ENST00000316763 ANKRD26Q9UPS8 1709 aa18.61■□□□□ 0.57
VRK3-201ENST00000316763 SSH2Q76I76 1423 aa18.61■□□□□ 0.57
VRK3-201ENST00000316763 PIP4K2BP78356 416 aa18.61■□□□□ 0.57
VRK3-201ENST00000316763 ROBO1Q9Y6N7 1651 aa18.6■□□□□ 0.57
VRK3-201ENST00000316763 DDX17Q92841 729 aaKnown RBP18.6■□□□□ 0.57
VRK3-201ENST00000316763 KIF20BQ96Q89 1820 aa18.6■□□□□ 0.57
VRK3-201ENST00000316763 TNNT2P45379 298 aaPredicted RBP18.59■□□□□ 0.57
VRK3-201ENST00000316763 EXOC6Q8TAG9 804 aa18.59■□□□□ 0.57
VRK3-201ENST00000316763 NRKQ7Z2Y5 1582 aa18.59■□□□□ 0.57
VRK3-201ENST00000316763 PSME1Q06323 249 aa18.58■□□□□ 0.56
VRK3-201ENST00000316763 TTC21BQ7Z4L5 1316 aa18.58■□□□□ 0.56
VRK3-201ENST00000316763 XPCQ01831 940 aaPredicted RBP18.57■□□□□ 0.56
VRK3-201ENST00000316763 NME9Q86XW9 330 aa18.57■□□□□ 0.56
VRK3-201ENST00000316763 MTHFSP49914 203 aa18.57■□□□□ 0.56
VRK3-201ENST00000316763 NPHP3Q7Z494 1330 aa18.55■□□□□ 0.56
VRK3-201ENST00000316763 GOLGA2Q08379 1002 aa18.55■□□□□ 0.56
VRK3-201ENST00000316763 KRT28Q7Z3Y7 464 aa18.55■□□□□ 0.56
VRK3-201ENST00000316763 NHSL1Q5SYE7 1610 aa18.55■□□□□ 0.56
VRK3-201ENST00000316763 ERICH6Q7L0X2 663 aa18.55■□□□□ 0.56
VRK3-201ENST00000316763 NGEFQ8N5V2 710 aa18.55■□□□□ 0.56
VRK3-201ENST00000316763 TTC21AQ8NDW8 1320 aa18.54■□□□□ 0.56
VRK3-201ENST00000316763 MSH5O43196 834 aa18.54■□□□□ 0.56
VRK3-201ENST00000316763 ZNF521Q96K83 1311 aa18.53■□□□□ 0.56
VRK3-201ENST00000316763 COG3Q96JB2 828 aa18.53■□□□□ 0.56
VRK3-201ENST00000316763 ZRANB1Q9UGI0 708 aa18.53■□□□□ 0.56
VRK3-201ENST00000316763 AATKQ6ZMQ8 1374 aa18.52■□□□□ 0.55
VRK3-201ENST00000316763 PXDNQ92626 1479 aa18.52■□□□□ 0.55
VRK3-201ENST00000316763 TRPM3Q9HCF6 1732 aaPredicted RBP18.51■□□□□ 0.55
VRK3-201ENST00000316763 OVOS2A0A0J9YW53 1432 aa18.51■□□□□ 0.55
VRK3-201ENST00000316763 OVOS2Q6IE36 1432 aa18.51■□□□□ 0.55
VRK3-201ENST00000316763 PAK3O75914 559 aaPredicted RBP18.51■□□□□ 0.55
VRK3-201ENST00000316763 CFAP53Q96M91 514 aa18.51■□□□□ 0.55
VRK3-201ENST00000316763 SOS2Q07890 1332 aaPredicted RBP18.51■□□□□ 0.55
VRK3-201ENST00000316763 DUSP27Q5VZP5 1158 aa18.51■□□□□ 0.55
VRK3-201ENST00000316763 PNPLA6Q8IY17 1366 aa18.5■□□□□ 0.55
VRK3-201ENST00000316763 AHDC1Q5TGY3 1603 aaPredicted RBP18.5■□□□□ 0.55
VRK3-201ENST00000316763 USP31Q70CQ4 1352 aa18.49■□□□□ 0.55
VRK3-201ENST00000316763 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.49■□□□□ 0.55
VRK3-201ENST00000316763 TCERG1O14776 1098 aaKnown RBP18.49■□□□□ 0.55
VRK3-201ENST00000316763 POLKQ9UBT6 870 aa18.49■□□□□ 0.55
VRK3-201ENST00000316763 COL3A1P02461 1466 aaPredicted RBP18.48■□□□□ 0.55
VRK3-201ENST00000316763 PHLPP1O60346 1717 aa18.48■□□□□ 0.55
VRK3-201ENST00000316763 PLIN1O60240 522 aa18.48■□□□□ 0.55
VRK3-201ENST00000316763 SLFN5Q08AF3 891 aa18.48■□□□□ 0.55
VRK3-201ENST00000316763 SHPRHQ149N8 1683 aa18.48■□□□□ 0.55
VRK3-201ENST00000316763 CCDC146Q8IYE0 955 aa18.47■□□□□ 0.55
VRK3-201ENST00000316763 SBNO1A3KN83 1393 aa18.47■□□□□ 0.55
VRK3-201ENST00000316763 CRBNQ96SW2 442 aa18.47■□□□□ 0.55
VRK3-201ENST00000316763 APAF1O14727 1248 aa18.46■□□□□ 0.55
VRK3-201ENST00000316763 FBLN1P23142 703 aa18.46■□□□□ 0.55
VRK3-201ENST00000316763 ABTB2Q8N961 1025 aa18.46■□□□□ 0.55
VRK3-201ENST00000316763 PIK3C2AO00443 1686 aa18.46■□□□□ 0.55
VRK3-201ENST00000316763 ALS2Q96Q42 1657 aa18.46■□□□□ 0.55
VRK3-201ENST00000316763 SPATA31A3Q5VYP0 1347 aa18.46■□□□□ 0.55
VRK3-201ENST00000316763 LMOD2Q6P5Q4 547 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms