RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ZBTB47Q9UFB7 747 aaPredicted RBP25.97■■□□□ 1.75
VPS53-201ENST00000291074 METP08581 1390 aa25.97■■□□□ 1.75
VPS53-201ENST00000291074 FBLN1P23142 703 aa25.97■■□□□ 1.75
VPS53-201ENST00000291074 IGHDP01880 384 aa25.95■■□□□ 1.74
VPS53-201ENST00000291074 RGS3P49796 1198 aa25.95■■□□□ 1.74
VPS53-201ENST00000291074 TSR2Q969E8 191 aaKnown RBP25.94■■□□□ 1.74
VPS53-201ENST00000291074 MYH16Q9H6N6 1097 aa25.93■■□□□ 1.74
VPS53-201ENST00000291074 TMPOP42166 694 aaKnown RBP25.93■■□□□ 1.74
VPS53-201ENST00000291074 TXNDC2Q86VQ3 553 aa25.93■■□□□ 1.74
VPS53-201ENST00000291074 RLBP1P12271 317 aa25.92■■□□□ 1.74
VPS53-201ENST00000291074 CLUAP1Q96AJ1 413 aa25.92■■□□□ 1.74
VPS53-201ENST00000291074 ATP7BP35670 1465 aa25.92■■□□□ 1.74
VPS53-201ENST00000291074 MAPK8IP3Q9UPT6 1336 aa25.92■■□□□ 1.74
VPS53-201ENST00000291074 DIAPH1O60610 1272 aaKnown RBP25.91■■□□□ 1.74
VPS53-201ENST00000291074 TRIM35Q9UPQ4 493 aa25.91■■□□□ 1.74
VPS53-201ENST00000291074 NCBP3Q53F19 620 aaKnown RBP25.91■■□□□ 1.74
VPS53-201ENST00000291074 PPM1GO15355 546 aaPredicted RBP25.9■■□□□ 1.74
VPS53-201ENST00000291074 PNPLA6Q8IY17 1366 aa25.9■■□□□ 1.74
VPS53-201ENST00000291074 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.89■■□□□ 1.73
VPS53-201ENST00000291074 MAP2P11137 1827 aaKnown RBP25.88■■□□□ 1.73
VPS53-201ENST00000291074 NCKAP5LQ9HCH0 1330 aa25.88■■□□□ 1.73
VPS53-201ENST00000291074 WASLO00401 505 aaPredicted RBP25.88■■□□□ 1.73
VPS53-201ENST00000291074 PPIP5K1Q6PFW1 1433 aa25.88■■□□□ 1.73
VPS53-201ENST00000291074 NBR1Q14596 966 aa25.87■■□□□ 1.73
VPS53-201ENST00000291074 TNRQ92752 1358 aa25.86■■□□□ 1.73
VPS53-201ENST00000291074 POLKQ9UBT6 870 aa25.86■■□□□ 1.73
VPS53-201ENST00000291074 C8orf34Q49A92 452 aa25.86■■□□□ 1.73
VPS53-201ENST00000291074 LRRC7Q96NW7 1537 aa25.85■■□□□ 1.73
VPS53-201ENST00000291074 EXOSC9Q06265 439 aaKnown RBP25.85■■□□□ 1.73
VPS53-201ENST00000291074 RIPK4P57078 832 aa25.84■■□□□ 1.73
VPS53-201ENST00000291074 ZRANB1Q9UGI0 708 aa25.84■■□□□ 1.73
VPS53-201ENST00000291074 FAM161AQ3B820 660 aa25.84■■□□□ 1.73
VPS53-201ENST00000291074 NME9Q86XW9 330 aa25.84■■□□□ 1.73
VPS53-201ENST00000291074 KNDC1Q76NI1 1749 aa25.84■■□□□ 1.73
VPS53-201ENST00000291074 UBR1Q8IWV7 1749 aa25.84■■□□□ 1.73
VPS53-201ENST00000291074 CPSF1Q10570 1443 aaKnown RBP25.83■■□□□ 1.73
VPS53-201ENST00000291074 NUDT16Q96DE0 195 aaKnown RBP25.81■■□□□ 1.72
VPS53-201ENST00000291074 CDC42BPGQ6DT37 1551 aa25.81■■□□□ 1.72
VPS53-201ENST00000291074 EMILIN1Q9Y6C2 1016 aa25.81■■□□□ 1.72
VPS53-201ENST00000291074 EDC4Q6P2E9 1401 aaKnown RBP25.81■■□□□ 1.72
VPS53-201ENST00000291074 PCDHB15Q9Y5E8 787 aa25.81■■□□□ 1.72
VPS53-201ENST00000291074 TMEM2Q9UHN6 1383 aa25.79■■□□□ 1.72
VPS53-201ENST00000291074 PRKAR2BP31323 418 aa25.79■■□□□ 1.72
VPS53-201ENST00000291074 CPS1P31327 1500 aa25.79■■□□□ 1.72
VPS53-201ENST00000291074 RSPH6AQ9H0K4 717 aa25.78■■□□□ 1.72
VPS53-201ENST00000291074 TECPR2O15040 1411 aa25.78■■□□□ 1.72
VPS53-201ENST00000291074 HMOX1P09601 288 aa25.78■■□□□ 1.72
VPS53-201ENST00000291074 SMC4Q9NTJ3 1288 aa25.78■■□□□ 1.72
VPS53-201ENST00000291074 FAM135BQ49AJ0 1406 aa25.78■■□□□ 1.72
VPS53-201ENST00000291074 MON2Q7Z3U7 1717 aa25.77■■□□□ 1.72
VPS53-201ENST00000291074 FCHSD2O94868 740 aa25.76■■□□□ 1.71
VPS53-201ENST00000291074 ZKSCAN2Q63HK3 967 aa25.76■■□□□ 1.71
VPS53-201ENST00000291074 HDGFP51858 240 aaKnown RBP25.76■■□□□ 1.71
VPS53-201ENST00000291074 SSH1Q8WYL5 1049 aa25.76■■□□□ 1.71
VPS53-201ENST00000291074 ROBO2Q9HCK4 1378 aa25.75■■□□□ 1.71
VPS53-201ENST00000291074 PRR36Q9H6K5 1346 aa25.75■■□□□ 1.71
VPS53-201ENST00000291074 IL16Q14005 1332 aa25.75■■□□□ 1.71
VPS53-201ENST00000291074 PNNQ9H307 717 aaKnown RBP25.75■■□□□ 1.71
VPS53-201ENST00000291074 CCDC61Q9Y6R9 512 aa25.75■■□□□ 1.71
VPS53-201ENST00000291074 ITSN1Q15811 1721 aa25.75■■□□□ 1.71
VPS53-201ENST00000291074 AKAP12Q02952 1782 aa25.74■■□□□ 1.71
VPS53-201ENST00000291074 CT47B1P0C2W7 299 aaPredicted RBP25.74■■□□□ 1.71
VPS53-201ENST00000291074 ADAMTS13Q76LX8 1427 aa25.74■■□□□ 1.71
VPS53-201ENST00000291074 MVPQ14764 893 aaKnown RBP25.73■■□□□ 1.71
VPS53-201ENST00000291074 FTSJ3Q8IY81 847 aaKnown RBP25.73■■□□□ 1.71
VPS53-201ENST00000291074 PHACTR3Q96KR7 559 aa25.73■■□□□ 1.71
VPS53-201ENST00000291074 VIRMAQ69YN4 1812 aaKnown RBP25.73■■□□□ 1.71
VPS53-201ENST00000291074 CEBPAP49715 358 aaPredicted RBP25.72■■□□□ 1.71
VPS53-201ENST00000291074 DZIP1LQ8IYY4 767 aaKnown RBP25.72■■□□□ 1.71
VPS53-201ENST00000291074 PMFBP1Q8TBY8 1022 aa25.72■■□□□ 1.71
VPS53-201ENST00000291074 LTKP29376 864 aa25.71■■□□□ 1.71
VPS53-201ENST00000291074 RRS1Q15050 365 aaKnown RBP25.71■■□□□ 1.71
VPS53-201ENST00000291074 TRIM27P14373 513 aa25.71■■□□□ 1.71
VPS53-201ENST00000291074 SIRT1Q96EB6 747 aa25.71■■□□□ 1.71
VPS53-201ENST00000291074 C3P01024 1663 aa25.71■■□□□ 1.71
VPS53-201ENST00000291074 LAS1LQ9Y4W2 734 aaKnown RBP25.71■■□□□ 1.71
VPS53-201ENST00000291074 CDK12Q9NYV4 1490 aaPredicted RBP25.7■■□□□ 1.7
VPS53-201ENST00000291074 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.7■■□□□ 1.7
VPS53-201ENST00000291074 IL13P35225 146 aa25.7■■□□□ 1.7
VPS53-201ENST00000291074 COG3Q96JB2 828 aa25.7■■□□□ 1.7
VPS53-201ENST00000291074 THUMPD2Q9BTF0 503 aaKnown RBP25.7■■□□□ 1.7
VPS53-201ENST00000291074 NUTM2FA1L443 756 aa25.69■■□□□ 1.7
VPS53-201ENST00000291074 AAMPQ13685 434 aa25.69■■□□□ 1.7
VPS53-201ENST00000291074 PLPPR3Q6T4P5 718 aa25.69■■□□□ 1.7
VPS53-201ENST00000291074 DDRGK1Q96HY6 314 aa25.69■■□□□ 1.7
VPS53-201ENST00000291074 NEFMP07197 916 aa25.68■■□□□ 1.7
VPS53-201ENST00000291074 NOB1Q9ULX3 412 aaKnown RBP25.68■■□□□ 1.7
VPS53-201ENST00000291074 SLC4A3P48751 1232 aa25.66■■□□□ 1.7
VPS53-201ENST00000291074 AATKQ6ZMQ8 1374 aa25.66■■□□□ 1.7
VPS53-201ENST00000291074 NFE2L2Q16236 605 aa25.66■■□□□ 1.7
VPS53-201ENST00000291074 ATF7IPQ6VMQ6 1270 aa25.65■■□□□ 1.7
VPS53-201ENST00000291074 SLC26A8Q96RN1 970 aa25.65■■□□□ 1.7
VPS53-201ENST00000291074 PDZRN3Q9UPQ7 1066 aa25.65■■□□□ 1.7
VPS53-201ENST00000291074 ITPRIPQ8IWB1 547 aa25.64■■□□□ 1.69
VPS53-201ENST00000291074 DLG5Q8TDM6 1919 aa25.64■■□□□ 1.69
VPS53-201ENST00000291074 PLEKHG1Q9ULL1 1385 aa25.63■■□□□ 1.69
VPS53-201ENST00000291074 RWDD1Q9H446 243 aaPredicted RBP25.63■■□□□ 1.69
VPS53-201ENST00000291074 PTPRUQ92729 1446 aa25.61■■□□□ 1.69
VPS53-201ENST00000291074 TOPAZ1Q8N9V7 1692 aa25.61■■□□□ 1.69
VPS53-201ENST00000291074 TMEM57Q8N5G2 664 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms