RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 AAMPQ13685 434 aa20.95■□□□□ 0.94
UBE3D-201ENST00000237186 CT47B1P0C2W7 299 aaPredicted RBP20.94■□□□□ 0.94
UBE3D-201ENST00000237186 METP08581 1390 aa20.94■□□□□ 0.94
UBE3D-201ENST00000237186 WASLO00401 505 aaPredicted RBP20.94■□□□□ 0.94
UBE3D-201ENST00000237186 PNNQ9H307 717 aaKnown RBP20.93■□□□□ 0.94
UBE3D-201ENST00000237186 CPSF1Q10570 1443 aaKnown RBP20.93■□□□□ 0.94
UBE3D-201ENST00000237186 DIAPH1O60610 1272 aaKnown RBP20.92■□□□□ 0.94
UBE3D-201ENST00000237186 TMPOP42166 694 aaKnown RBP20.92■□□□□ 0.94
UBE3D-201ENST00000237186 IL16Q14005 1332 aa20.91■□□□□ 0.94
UBE3D-201ENST00000237186 U2SURPO15042 1029 aaKnown RBP20.91■□□□□ 0.94
UBE3D-201ENST00000237186 TMEM2Q9UHN6 1383 aa20.9■□□□□ 0.94
UBE3D-201ENST00000237186 CEBPAP49715 358 aaPredicted RBP20.9■□□□□ 0.94
UBE3D-201ENST00000237186 TRIM35Q9UPQ4 493 aa20.89■□□□□ 0.93
UBE3D-201ENST00000237186 EDC4Q6P2E9 1401 aaKnown RBP20.89■□□□□ 0.93
UBE3D-201ENST00000237186 FCHSD2O94868 740 aa20.88■□□□□ 0.93
UBE3D-201ENST00000237186 CLUAP1Q96AJ1 413 aa20.88■□□□□ 0.93
UBE3D-201ENST00000237186 POLKQ9UBT6 870 aa20.88■□□□□ 0.93
UBE3D-201ENST00000237186 CDC42BPGQ6DT37 1551 aa20.87■□□□□ 0.93
UBE3D-201ENST00000237186 MAPK8IP3Q9UPT6 1336 aa20.87■□□□□ 0.93
UBE3D-201ENST00000237186 CANXP27824 592 aaKnown RBP20.87■□□□□ 0.93
UBE3D-201ENST00000237186 FER1L4A9Z1Z3 1794 aa20.87■□□□□ 0.93
UBE3D-201ENST00000237186 TXNDC2Q86VQ3 553 aa20.86■□□□□ 0.93
UBE3D-201ENST00000237186 PANK1Q8TE04 598 aa20.86■□□□□ 0.93
UBE3D-201ENST00000237186 KNDC1Q76NI1 1749 aa20.86■□□□□ 0.93
UBE3D-201ENST00000237186 SKAP1Q86WV1 359 aa20.86■□□□□ 0.93
UBE3D-201ENST00000237186 CCDC61Q9Y6R9 512 aa20.86■□□□□ 0.93
UBE3D-201ENST00000237186 PPIP5K1Q6PFW1 1433 aa20.85■□□□□ 0.93
UBE3D-201ENST00000237186 C3P01024 1663 aa20.85■□□□□ 0.93
UBE3D-201ENST00000237186 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.85■□□□□ 0.93
UBE3D-201ENST00000237186 NUDT16Q96DE0 195 aaKnown RBP20.85■□□□□ 0.93
UBE3D-201ENST00000237186 ZBTB47Q9UFB7 747 aaPredicted RBP20.85■□□□□ 0.93
UBE3D-201ENST00000237186 COG6Q9Y2V7 657 aa20.85■□□□□ 0.93
UBE3D-201ENST00000237186 UBR1Q8IWV7 1749 aa20.85■□□□□ 0.93
UBE3D-201ENST00000237186 CPS1P31327 1500 aa20.85■□□□□ 0.93
UBE3D-201ENST00000237186 KIF20BQ96Q89 1820 aa20.85■□□□□ 0.93
UBE3D-201ENST00000237186 AATKQ6ZMQ8 1374 aa20.85■□□□□ 0.93
UBE3D-201ENST00000237186 PAK3O75914 559 aaPredicted RBP20.84■□□□□ 0.93
UBE3D-201ENST00000237186 IGHDP01880 384 aa20.83■□□□□ 0.92
UBE3D-201ENST00000237186 FRAT1Q92837 279 aaPredicted RBP20.83■□□□□ 0.92
UBE3D-201ENST00000237186 ADAMTS13Q76LX8 1427 aa20.82■□□□□ 0.92
UBE3D-201ENST00000237186 RIPK4P57078 832 aa20.81■□□□□ 0.92
UBE3D-201ENST00000237186 FAM161AQ3B820 660 aa20.81■□□□□ 0.92
UBE3D-201ENST00000237186 PLPPR3Q6T4P5 718 aa20.81■□□□□ 0.92
UBE3D-201ENST00000237186 ZNF692Q9BU19 519 aaPredicted RBP20.81■□□□□ 0.92
UBE3D-201ENST00000237186 RSPH6AQ9H0K4 717 aa20.81■□□□□ 0.92
UBE3D-201ENST00000237186 PLEKHG1Q9ULL1 1385 aa20.8■□□□□ 0.92
UBE3D-201ENST00000237186 RLBP1P12271 317 aa20.79■□□□□ 0.92
UBE3D-201ENST00000237186 PMFBP1Q8TBY8 1022 aa20.79■□□□□ 0.92
UBE3D-201ENST00000237186 EXOSC9Q06265 439 aaKnown RBP20.78■□□□□ 0.92
UBE3D-201ENST00000237186 C8orf34Q49A92 452 aa20.78■□□□□ 0.92
UBE3D-201ENST00000237186 ZKSCAN2Q63HK3 967 aa20.78■□□□□ 0.92
UBE3D-201ENST00000237186 ROBO2Q9HCK4 1378 aa20.78■□□□□ 0.92
UBE3D-201ENST00000237186 TSR2Q969E8 191 aaKnown RBP20.77■□□□□ 0.92
UBE3D-201ENST00000237186 IL13P35225 146 aa20.77■□□□□ 0.92
UBE3D-201ENST00000237186 NME9Q86XW9 330 aa20.77■□□□□ 0.92
UBE3D-201ENST00000237186 CDK12Q9NYV4 1490 aaPredicted RBP20.77■□□□□ 0.91
UBE3D-201ENST00000237186 LTKP29376 864 aa20.76■□□□□ 0.91
UBE3D-201ENST00000237186 NPM2Q86SE8 214 aaKnown RBP20.76■□□□□ 0.91
UBE3D-201ENST00000237186 BCL2L13Q9BXK5 485 aa20.76■□□□□ 0.91
UBE3D-201ENST00000237186 FBLN1P23142 703 aa20.75■□□□□ 0.91
UBE3D-201ENST00000237186 PRR36Q9H6K5 1346 aa20.75■□□□□ 0.91
UBE3D-201ENST00000237186 PRKAR2BP31323 418 aa20.75■□□□□ 0.91
UBE3D-201ENST00000237186 MVPQ14764 893 aaKnown RBP20.75■□□□□ 0.91
UBE3D-201ENST00000237186 COG3Q96JB2 828 aa20.75■□□□□ 0.91
UBE3D-201ENST00000237186 TNNQ9UQP3 1299 aa20.75■□□□□ 0.91
UBE3D-201ENST00000237186 NEFMP07197 916 aa20.74■□□□□ 0.91
UBE3D-201ENST00000237186 PCDHB15Q9Y5E8 787 aa20.74■□□□□ 0.91
UBE3D-201ENST00000237186 EMILIN1Q9Y6C2 1016 aa20.74■□□□□ 0.91
UBE3D-201ENST00000237186 LRRC7Q96NW7 1537 aa20.74■□□□□ 0.91
UBE3D-201ENST00000237186 NFE2L2Q16236 605 aa20.73■□□□□ 0.91
UBE3D-201ENST00000237186 DZIP1LQ8IYY4 767 aaKnown RBP20.73■□□□□ 0.91
UBE3D-201ENST00000237186 SSH1Q8WYL5 1049 aa20.73■□□□□ 0.91
UBE3D-201ENST00000237186 PLEKHG3A1L390 1219 aa20.73■□□□□ 0.91
UBE3D-201ENST00000237186 PPM1GO15355 546 aaPredicted RBP20.73■□□□□ 0.91
UBE3D-201ENST00000237186 RGS3P49796 1198 aa20.73■□□□□ 0.91
UBE3D-201ENST00000237186 ZNF428Q96B54 188 aa20.73■□□□□ 0.91
UBE3D-201ENST00000237186 DDRGK1Q96HY6 314 aa20.73■□□□□ 0.91
UBE3D-201ENST00000237186 NCKAP5LQ9HCH0 1330 aa20.72■□□□□ 0.91
UBE3D-201ENST00000237186 MON2Q7Z3U7 1717 aa20.72■□□□□ 0.91
UBE3D-201ENST00000237186 SMC4Q9NTJ3 1288 aa20.72■□□□□ 0.91
UBE3D-201ENST00000237186 BRPF1P55201 1214 aaPredicted RBP20.71■□□□□ 0.91
UBE3D-201ENST00000237186 ALDH1L2Q3SY69 923 aa20.71■□□□□ 0.91
UBE3D-201ENST00000237186 CALD1Q05682 793 aaKnown RBP20.71■□□□□ 0.91
UBE3D-201ENST00000237186 ZRANB1Q9UGI0 708 aa20.71■□□□□ 0.91
UBE3D-201ENST00000237186 EID1Q9Y6B2 187 aa20.71■□□□□ 0.91
UBE3D-201ENST00000237186 ARHGAP23Q9P227 1491 aa20.7■□□□□ 0.9
UBE3D-201ENST00000237186 SLIT1O75093 1534 aa20.7■□□□□ 0.9
UBE3D-201ENST00000237186 PHACTR3Q96KR7 559 aa20.7■□□□□ 0.9
UBE3D-201ENST00000237186 RWDD1Q9H446 243 aaPredicted RBP20.7■□□□□ 0.9
UBE3D-201ENST00000237186 RIMS1Q86UR5 1692 aaKnown RBP20.69■□□□□ 0.9
UBE3D-201ENST00000237186 ATF7IPQ6VMQ6 1270 aa20.69■□□□□ 0.9
UBE3D-201ENST00000237186 TRIM27P14373 513 aa20.69■□□□□ 0.9
UBE3D-201ENST00000237186 FTSJ3Q8IY81 847 aaKnown RBP20.69■□□□□ 0.9
UBE3D-201ENST00000237186 THEMISQ8N1K5 641 aaPredicted RBP20.69■□□□□ 0.9
UBE3D-201ENST00000237186 TBX22Q9Y458 520 aa20.69■□□□□ 0.9
UBE3D-201ENST00000237186 AKAP12Q02952 1782 aa20.68■□□□□ 0.9
UBE3D-201ENST00000237186 TTC21BQ7Z4L5 1316 aa20.67■□□□□ 0.9
UBE3D-201ENST00000237186 KIF16BQ96L93 1317 aa20.67■□□□□ 0.9
UBE3D-201ENST00000237186 PTPRUQ92729 1446 aa20.67■□□□□ 0.9
UBE3D-201ENST00000237186 MAP2P11137 1827 aaKnown RBP20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms