RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Tmc1Q8R4P5 757 aa14.13□□□□□ -0.15
Trim56-201ENSMUST00000054384 FanciQ8K368 1330 aa14.13□□□□□ -0.15
Trim56-201ENSMUST00000054384 Ccdc102aQ3TMW1 549 aa14.13□□□□□ -0.15
Trim56-201ENSMUST00000054384 Cux2P70298 1426 aa14.13□□□□□ -0.15
Trim56-201ENSMUST00000054384 Zpr1Q62384 459 aa14.13□□□□□ -0.15
Trim56-201ENSMUST00000054384 Bcl2l13P59017 434 aa14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Kcnh8P59111 1102 aa14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Secisbp2lQ6A098 1086 aaKnown RBP14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Tango6Q8C3S2 1079 aa14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Sytl4Q9R0Q1 673 aa14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Washc4Q3UMB9 1173 aa14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Arhgef18Q6P9R4 1021 aa14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Ercc6lQ8BHK9 1240 aa14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Q9D9S1 216 aa14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Larp1Q6ZQ58 1072 aaKnown RBP14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Themis2Q91YX0 663 aa14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Tubb6Q922F4 447 aa14.12□□□□□ -0.15
Trim56-201ENSMUST00000054384 Mipol1Q9D9F8 279 aa14.11□□□□□ -0.15
Trim56-201ENSMUST00000054384 Cc2d2bA0A286YDU8 1405 aa14.11□□□□□ -0.15
Trim56-201ENSMUST00000054384 Phf14Q9D4H9 881 aa14.11□□□□□ -0.15
Trim56-201ENSMUST00000054384 Spag5Q7TME2 1165 aa14.11□□□□□ -0.15
Trim56-201ENSMUST00000054384 Fez1Q8K0X8 392 aa14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 CastP51125 788 aa14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 Med4Q9CQA5 270 aa14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 Jakmip2D3YXK0 820 aa14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 Babam1Q3UI43 333 aa14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 Sirt1Q923E4 737 aa14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 Tnpo1Q8BFY9 898 aaKnown RBP14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 Ssr1Q9CY50 286 aaKnown RBP14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 Lamb3Q61087 1168 aa14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 Olfml1Q8BSH2 233 aa14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 TefQ9JLC6 301 aa14.1□□□□□ -0.15
Trim56-201ENSMUST00000054384 Ttll13A4Q9F6 804 aa14.09□□□□□ -0.15
Trim56-201ENSMUST00000054384 MicalclQ9D5U9 680 aa14.09□□□□□ -0.15
Trim56-201ENSMUST00000054384 Nol7Q9D7Z3 254 aaKnown RBP14.09□□□□□ -0.15
Trim56-201ENSMUST00000054384 CenpqQ9CPQ5 267 aa14.09□□□□□ -0.15
Trim56-201ENSMUST00000054384 Rbm5Q91YE7 815 aaKnown RBP14.09□□□□□ -0.15
Trim56-201ENSMUST00000054384 Gnai2P08752 355 aaKnown RBP14.08□□□□□ -0.15
Trim56-201ENSMUST00000054384 Cnnm3Q32NY4 713 aa14.08□□□□□ -0.15
Trim56-201ENSMUST00000054384 Kif20aP97329 887 aa14.08□□□□□ -0.16
Trim56-201ENSMUST00000054384 TxlnaQ6PAM1 554 aaKnown RBP14.08□□□□□ -0.16
Trim56-201ENSMUST00000054384 Krt85Q9Z2T6 507 aa14.08□□□□□ -0.16
Trim56-201ENSMUST00000054384 Smg7Q5RJH6 1138 aaKnown RBP14.08□□□□□ -0.16
Trim56-201ENSMUST00000054384 Cyp26c1B2RXA7 518 aa14.08□□□□□ -0.16
Trim56-201ENSMUST00000054384 Rpgrip1lQ8CG73 1264 aa14.08□□□□□ -0.16
Trim56-201ENSMUST00000054384 Cdkl5Q3UTQ8 938 aa14.08□□□□□ -0.16
Trim56-201ENSMUST00000054384 Smarca4Q3TKT4 1613 aaKnown RBP14.08□□□□□ -0.16
Trim56-201ENSMUST00000054384 Gcc1Q9D4H2 778 aa14.07□□□□□ -0.16
Trim56-201ENSMUST00000054384 Otud6bQ8K2H2 294 aa14.07□□□□□ -0.16
Trim56-201ENSMUST00000054384 Ccdc83Q9D4V3 305 aa14.07□□□□□ -0.16
Trim56-201ENSMUST00000054384 Nsd2Q8BVE8 1365 aa14.07□□□□□ -0.16
Trim56-201ENSMUST00000054384 Arglu1Q3UL36 271 aaKnown RBP14.07□□□□□ -0.16
Trim56-201ENSMUST00000054384 PrkcshO08795 521 aa14.07□□□□□ -0.16
Trim56-201ENSMUST00000054384 Mex3cQ05A36 652 aaKnown RBP14.07□□□□□ -0.16
Trim56-201ENSMUST00000054384 Eif5P59325 429 aaKnown RBP14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Stk11ipQ3TAA7 1072 aa14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Arhgap5P97393 1501 aa14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Dydc1Q9D9T0 175 aa14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Adck5Q80V03 582 aa14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Rnf187Q8BFX1 236 aa14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Frmd3Q8BHD4 595 aa14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Ift57Q8BXG3 429 aa14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Shroom4Q1W617 1475 aa14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Atf3Q60765 181 aa14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Slu7Q8BHJ9 585 aa14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Gnl2Q99LH1 728 aaKnown RBP14.06□□□□□ -0.16
Trim56-201ENSMUST00000054384 Pmfbp1Q9WVQ0 1022 aa14.05□□□□□ -0.16
Trim56-201ENSMUST00000054384 Lrrfip2Q91WK0 415 aa14.05□□□□□ -0.16
Trim56-201ENSMUST00000054384 Rab3gap2Q8BMG7 1366 aa14.05□□□□□ -0.16
Trim56-201ENSMUST00000054384 Spata24Q6P926 205 aa14.05□□□□□ -0.16
Trim56-201ENSMUST00000054384 IncenpQ9WU62 880 aa14.05□□□□□ -0.16
Trim56-201ENSMUST00000054384 Cfap58B2RW38 873 aa14.05□□□□□ -0.16
Trim56-201ENSMUST00000054384 Fam43aQ8BUP8 424 aa14.05□□□□□ -0.16
Trim56-201ENSMUST00000054384 Mctp1E9PV86 951 aa14.05□□□□□ -0.16
Trim56-201ENSMUST00000054384 Bcl11bQ99PV8 884 aa14.04□□□□□ -0.16
Trim56-201ENSMUST00000054384 Gm10471E9Q1C7 252 aa14.04□□□□□ -0.16
Trim56-201ENSMUST00000054384 Lrrfip1Q3UZ39 729 aaKnown RBP14.04□□□□□ -0.16
Trim56-201ENSMUST00000054384 Fsd1Q7TPM6 496 aa14.04□□□□□ -0.16
Trim56-201ENSMUST00000054384 TatQ8QZR1 454 aa14.03□□□□□ -0.16
Trim56-201ENSMUST00000054384 Cfap45Q9D9U9 551 aa14.03□□□□□ -0.16
Trim56-201ENSMUST00000054384 Nphp1Q9QY53 687 aa14.03□□□□□ -0.16
Trim56-201ENSMUST00000054384 Cdc45Q9Z1X9 566 aa14.03□□□□□ -0.16
Trim56-201ENSMUST00000054384 Gm7361D3Z6R1 267 aa14.03□□□□□ -0.16
Trim56-201ENSMUST00000054384 Lmbr1Q9JIT0 490 aa14.03□□□□□ -0.16
Trim56-201ENSMUST00000054384 Rhot2Q8JZN7 620 aa14.03□□□□□ -0.16
Trim56-201ENSMUST00000054384 Homer1Q9Z2Y3 366 aa14.02□□□□□ -0.16
Trim56-201ENSMUST00000054384 Cep57l1Q8VDS7 400 aa14.02□□□□□ -0.17
Trim56-201ENSMUST00000054384 Stard3nlQ9DCI3 235 aa14.02□□□□□ -0.17
Trim56-201ENSMUST00000054384 Cavin4A2AMM0 362 aa14.02□□□□□ -0.17
Trim56-201ENSMUST00000054384 Washc2Q6PGL7 1334 aa14.02□□□□□ -0.17
Trim56-201ENSMUST00000054384 Gtf2a1Q99PM3 378 aa14.02□□□□□ -0.17
Trim56-201ENSMUST00000054384 Dnaaf4Q8R368 420 aa14.02□□□□□ -0.17
Trim56-201ENSMUST00000054384 Cnnm1Q0GA42 951 aa14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 Nol8Q3UHX0 1147 aaKnown RBP14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 Ncbp1Q3UYV9 790 aaKnown RBP14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 Fam184aE9PW83 1143 aa14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 Krt84Q99M73 603 aa14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 Map2k1P31938 393 aa14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 Pafah1b1P63005 410 aaKnown RBP14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 Jakmip1Q8BVL9 626 aa14.01□□□□□ -0.17
Retrieved 100 of 22,080 RNA–protein pairs in 11 ms