RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SPATA6Q9NWH7 488 aaPredicted RBP13.57□□□□□ -0.24
CLK3-224ENST00000568605 ASNSD1Q9NWL6 643 aa13.57□□□□□ -0.24
CLK3-224ENST00000568605 CYTH4Q9UIA0 394 aa13.57□□□□□ -0.24
CLK3-224ENST00000568605 OTOL1A6NHN0 477 aaPredicted RBP13.56□□□□□ -0.24
CLK3-224ENST00000568605 TRDMT1O14717 391 aaKnown RBP13.56□□□□□ -0.24
CLK3-224ENST00000568605 PI15O43692 258 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 LATS1O95835 1130 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 CYBBP04839 570 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 HMBSP08397 361 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 YWHAZP63104 245 aaKnown RBP13.56□□□□□ -0.24
CLK3-224ENST00000568605 RING1Q06587 406 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 ANO4Q32M45 955 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 PTPN20Q4JDL3 420 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 TMEM196Q5HYL7 178 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 OR6B2Q6IFH4 312 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 TXNDC11Q6PKC3 985 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 NUDT18Q6ZVK8 323 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 ERICH1Q86X53 443 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 UNC45BQ8IWX7 931 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 ADGRG2Q8IZP9 1017 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 DDX1Q92499 740 aaKnown RBP13.56□□□□□ -0.24
CLK3-224ENST00000568605 XPO6Q96QU8 1125 aaKnown RBP13.56□□□□□ -0.24
CLK3-224ENST00000568605 NUP58Q9BVL2 599 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 LINC00597Q9H2U6 94 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 LMAN1LQ9HAT1 526 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 SPHK2Q9NRA0 654 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 DLGAP2Q9P1A6 1054 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 WDR35Q9P2L0 1181 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 NOCTQ9UK39 431 aaKnown RBP13.56□□□□□ -0.24
CLK3-224ENST00000568605 PLXND1Q9Y4D7 1925 aa13.56□□□□□ -0.24
CLK3-224ENST00000568605 CEP192Q8TEP8 1941 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 SHISA7A6NL88 538 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 HOXC11O43248 304 aaPredicted RBP13.55□□□□□ -0.24
CLK3-224ENST00000568605 CBFA2T2O43439 604 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 LAMTOR5O43504 91 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 GABBR2O75899 941 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 MMEP08473 750 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 CCR3P51677 355 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 NOMO3P69849 1222 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 ARID5AQ03989 594 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 CCINQ13939 588 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 NR1I3Q14994 352 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 TRIP4Q15650 581 aaPredicted RBP13.55□□□□□ -0.24
CLK3-224ENST00000568605 FIGNQ5HY92 759 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 LY6G5CQ5SRR4 150 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 PPP1R2P3Q6NXS1 205 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 Q6ZNB5 142 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 FAM183BPQ6ZVS7 135 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 SLC26A9Q7LBE3 791 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 DENND1CQ8IV53 801 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 CPXM2Q8N436 756 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 C18orf8Q96DM3 657 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 BBS2Q9BXC9 721 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 EDEM3Q9BZQ6 932 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 NUCKS1Q9H1E3 243 aaKnown RBP13.55□□□□□ -0.24
CLK3-224ENST00000568605 FAM204AQ9H8W3 233 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 SEPT11Q9NVA2 429 aaKnown RBP13.55□□□□□ -0.24
CLK3-224ENST00000568605 MARK1Q9P0L2 795 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 SFMBT1Q9UHJ3 866 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 STAP1Q9ULZ2 295 aa13.55□□□□□ -0.24
CLK3-224ENST00000568605 MTF2Q9Y483 593 aaPredicted RBP13.55□□□□□ -0.24
CLK3-224ENST00000568605 CACNA1HO95180 2353 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 CKAP5Q14008 2032 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 RALGAPA1Q6GYQ0 2036 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 TYW5A2RUC4 315 aaKnown RBP13.54□□□□□ -0.24
CLK3-224ENST00000568605 NEDD8-MDP1E9PL57 170 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 MSI1O43347 362 aaKnown RBP13.54□□□□□ -0.24
CLK3-224ENST00000568605 ATG13O75143 517 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 DAB1O75553 588 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 APOEP02649 317 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 ERBB2P04626 1255 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 APODP05090 189 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 CHRNB1P11230 501 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 GBP1P32455 592 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 SCNN1AP37088 669 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 NSFP46459 744 aaKnown RBP13.54□□□□□ -0.24
CLK3-224ENST00000568605 SLC11A2P49281 568 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 TBX4P57082 545 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 SLC6A3Q01959 620 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 MTA1Q13330 715 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 ANGPT1Q15389 498 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 ASIC2Q16515 512 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 NAA35Q5VZE5 725 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 RHBDF2Q6PJF5 856 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 OLFML1Q6UWY5 402 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 C1orf210Q8IVY1 113 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 ZNF687Q8N1G0 1237 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 WDTC1Q8N5D0 677 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 ZNF397Q8NF99 534 aaPredicted RBP13.54□□□□□ -0.24
CLK3-224ENST00000568605 DQX1Q8TE96 717 aaKnown RBP13.54□□□□□ -0.24
CLK3-224ENST00000568605 SLC20A1Q8WUM9 679 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 WBP2Q969T9 261 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 NAP1L5Q96NT1 182 aaPredicted RBP13.54□□□□□ -0.24
CLK3-224ENST00000568605 PNKPQ96T60 521 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 DDX50Q9BQ39 737 aaKnown RBP13.54□□□□□ -0.24
CLK3-224ENST00000568605 TMEM51Q9NW97 253 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 RRN3Q9NYV6 651 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 TLR6Q9Y2C9 796 aa13.54□□□□□ -0.24
CLK3-224ENST00000568605 LRRC53A6NM62 1247 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 IRAK2O43187 625 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms