RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	KRT82	Q9NSB4	513 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	FOXD4L1	Q9NU39	408 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	PANK4	Q9NVE7	773 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	THAP10	Q9P2Z0	257 aa	Predicted RBP	13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	EIF2B4	Q9UI10	523 aa	Known RBP	13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	BTBD3	Q9Y2F9	522 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	ZNF510	Q9Y2H8	683 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	PCDHGA1	Q9Y5H4	931 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	APC2	O95996	2303 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079		A0A1B0GVT2	93 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	WASH3P	C4AMC7	463 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	CAPN9	O14815	690 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	EIF3D	O15371	548 aa	Known RBP eCLIP	13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	DFNA5	O60443	496 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	AP1G2	O75843	785 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	CST3	P01034	146 aa	Predicted RBP	13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	PENK	P01210	267 aa	Predicted RBP	13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	DLAT	P10515	647 aa	Known RBP	13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	C7	P10643	843 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	PLA2G2A	P14555	144 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	IL12RB1	P42701	662 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	COPA	P53621	1224 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	TRPC3	Q13507	836 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079		Q6ZNB5	142 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	CCDC73	Q6ZRK6	1079 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	ANKS1B	Q7Z6G8	1248 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	TADA2B	Q86TJ2	420 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	CCDC65	Q8IXS2	484 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	BAP1	Q92560	729 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	ERLEC1	Q96DZ1	483 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	DCBLD2	Q96PD2	775 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	FGFBP2	Q9BYJ0	223 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	XYLT2	Q9H1B5	865 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	PRORY	Q9H606	182 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	PNPLA8	Q9NP80	782 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	FTSJ1	Q9UET6	329 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	SMC3	Q9UQE7	1217 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	ACACA	Q13085	2346 aa		13.1	□□□□□ -0.31
CAPN1-223	ENST00000533079	TEX51	A0A1B0GUA7	166 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	GOLGA8CP	A6NN73	597 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	RRP8	O43159	456 aa	Known RBP	13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	FLNB	O75369	2602 aa	Known RBP	13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	PRB1	P04280	392 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	TRIM21	P19474	475 aa	Known RBP	13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	PDC	P20941	246 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	CHKA	P35790	457 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	EIF2S3	P41091	472 aa	Known RBP	13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	MFAP3	P55082	362 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	SNRPF	P62306	86 aa	Known RBP	13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	PAQR9	Q6ZVX9	377 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	ZNF605	Q86T29	641 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	FUK	Q8N0W3	1084 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	CDK5RAP1	Q96SZ6	601 aa	Known RBP	13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	FBRS	Q9HAH7	460 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	NXF1	Q9UBU9	619 aa	Known RBP	13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	DNMT3L	Q9UJW3	386 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	SCML2	Q9UQR0	700 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	ANKRD6	Q9Y2G4	727 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	ZDHHC9	Q9Y397	364 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	PCDHA5	Q9Y5H7	936 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	RAI2	Q9Y5P3	530 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	UBE4B	O95155	1302 aa		13.09	□□□□□ -0.31
CAPN1-223	ENST00000533079	CKAP5	Q14008	2032 aa		13.08	□□□□□ -0.31
CAPN1-223	ENST00000533079	TENM4	Q6N022	2769 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	FAM149A	A5PLN7	773 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	C1S	P09871	688 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	STAT6	P42226	847 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	PLA2G4A	P47712	749 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	CSNK1E	P49674	416 aa	Known RBP	13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	PSEN1	P49768	467 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	CYP24A1	Q07973	514 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	ZNF234	Q14588	700 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	KIF19	Q2TAC6	998 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	FYB2	Q5VWT5	728 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	DHRS13	Q6UX07	377 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	USP49	Q70CQ1	688 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	ZNF276	Q8N554	614 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	SNIP1	Q8TAD8	396 aa	Known RBP	13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	SNX19	Q92543	992 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	FCRL3	Q96P31	734 aa	Predicted RBP	13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	SLC2A11	Q9BYW1	496 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	TRIM9	Q9C026	710 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	LRRC27	Q9C0I9	530 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	TM9SF3	Q9HD45	589 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	FBXO2	Q9UK22	296 aa	Predicted RBP	13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	SRPRB	Q9Y5M8	271 aa	Known RBP	13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	SNX11	Q9Y5W9	270 aa		13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	MYO18A	Q92614	2054 aa	Known RBP	13.08	□□□□□ -0.32
CAPN1-223	ENST00000533079	PLK4	O00444	970 aa		13.07	□□□□□ -0.32
CAPN1-223	ENST00000533079	CYBB	P04839	570 aa		13.07	□□□□□ -0.32
CAPN1-223	ENST00000533079	P4HA1	P13674	534 aa		13.07	□□□□□ -0.32
CAPN1-223	ENST00000533079	AP3M2	P53677	418 aa		13.07	□□□□□ -0.32
CAPN1-223	ENST00000533079	MYL6	P60660	151 aa		13.07	□□□□□ -0.32
CAPN1-223	ENST00000533079	ZBTB16	Q05516	673 aa		13.07	□□□□□ -0.32
CAPN1-223	ENST00000533079	PDE4C	Q08493	712 aa		13.07	□□□□□ -0.32
CAPN1-223	ENST00000533079	GEN1	Q17RS7	908 aa		13.07	□□□□□ -0.32
CAPN1-223	ENST00000533079	BMT2	Q1RMZ1	405 aa		13.07	□□□□□ -0.32
CAPN1-223	ENST00000533079	ZNF699	Q32M78	642 aa		13.07	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms